BAC Information

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BAC

Clone NameB6Ng01-205J17
ChromosomeX (Build37)
Map Location 52,580,099 - 52,581,256
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625476, LOC625508, LOC666096, LOC100040867, LOC100040894, LOC666122, LOC666135, LOC100038960, EG666151, EG666161, EG666199, 4930527E24Rik, LOC626274
Downstream geneLOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205J17.bB6Ng01-205J17.g
ACCGA025244GA025245
length1,1461,216
definitionB6Ng01-205J17.b B6Ng01-205J17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttaaaatttattctttaatctttttttataagttcagacttta
tcccctcccttgtccaccctctgactgttccacatcccatacctcccccc
ccacacacacccatctccaagaggatgtccccaccatcctaccccactcc
accagacatcccttctccctgtagacttaagtctcttgagggttaaattc
accttctccgactgagtccagacccggcagacctctgctgtatatgtggt
ggggggcttcatatcatctggtatatgcttcctggttggtggttcagtgt
ctgagagatcctggaaggtccaggttagtcgagactgctggtctttctac
aggttctccctcttcctctgcttcttccagcttttccctaattcaaccac
aggagttcccagattctgtccattggttgcatgtaaatttctgcatctga
ctctttcacctgctggttaggtctttcagagggcagtcatgattgtctca
tttttgtgagcacagcatagcatcagtaatagtatcaggccttgatgcct
ctctttgagctggatcccagtttgggcctgtcactggatctccttttcct
caggcttctctccatttttgtccctgctgttctttcagacagtaacaatt
atgagtcagagcttttgactgtgggatgaccaccccaactttacacttga
tgtcttgtctctccactagaggaggactctataaagttccctctcctcac
tgcaggatatttcatctaaggtccctccctttgaatcctgaaattctctc
acctcccaggtctctggtacattctagaaggttttctcacctcctaccta
acaaagtttcctgtttccattctttttgctggtcctcagtgcttcagtcc
tgctccccacccccacaatacctgatcatgttcctttcttcctgtccttg
tcccttttccatccaagtgcctccttccccctccctgtagtgattttttg
aaccctatatttctaattatttttatcataagatagttgaaacatttttt
gatccattatcttatagttccgaaggtacagaaacaaatatcgaagcaca
tgctggatttacttcatatattgattttgaaaatgcacatagtatg
gaattcctaggacttgctggctgcttgtctagctgcatgttcagtgacag
atcatgtcataaaggaataaggtagaaagtaatagagcaacagccaacaa
tctcctctgccctccacatatgtatacatgtaccacagacacaaacatgc
aaaaaaataaaataaaaatgaaatttcattaatttcacacctcttgaaaa
agcaccattttcacctctgtgccataggaaaaaataagtccatggggcta
aatcaaaaatatttgcaagagtctgtgtcatgggtagaccttgtgtgctg
actctgcacctagtctcacaataccaacaggaaactcaactcccaggtgc
tctagcactcccaagatcacaagaatggctttaacatcaggagtaactga
gtccccaaggatccagggacacaggaactcctgccttgccagatgcatcc
ccaacatctggagtaactcagtcccaaaggatccaggaacacaggcattc
ttgccttggcagtggcatggttcccttctggtctgaaactatacctggat
cagacctggggtactgcctttgtacccactcttaaaacacccagaaggag
ctcaactctcgggtatctgaaatgcccaagatcacaggatcacagaggaa
gcttgactccacagagatcagacaaaccaagggaaactcgagttctaaca
gaagatcacagctgagggcacgacatctttcccaacatcctgtgtatctg
acaccccccacataaacctgggatacaaaaacaccctcccagacagaggc
atgggttccttgcagcttgcatctgtgtccagagaaaaactagtgacctg
gcaccccaccaaatcttgcaacaccaagaaaaatcttaactccccggagc
tatgacacaggatctcaggagattggttataccaggttttaaggatccaa
gaggcagtttgacttccaggagctcagacataaccagaatatcaggatcc
caggatcctggatcccagagacagctggactctgatgagttccgtcacaa
ccagggttactgaacagagaagcttccagtcagagactgcaggtaaagtt
gtatctaagaaatgagatgggtgaaaggtagcacaagattaaggcaattg
gacgagactagtgcatggatcagcaacacagcgttgctctacacatcagg
ccaagagctcctgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_52580099_52581256
seq2: B6Ng01-205J17.b_48_1193

seq1  GAATTCTTTAAAATTTATTCTTTAATCTTTTTTTATAAGTTCAGACTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAATTTATTCTTTAATCTTTTTTTATAAGTTCAGACTTTA  50

seq1  TCCCCTCCCTTGTCCACCCTCTGACTGTTCCACATCCCATACCTCCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCTTGTCCACCCTCTGACTGTTCCACATCCCATACCTCCCCCC  100

seq1  CCACACACACCCATCTCCAAGAGGATGTCCCCACCATCCTACCCCACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACACCCATCTCCAAGAGGATGTCCCCACCATCCTACCCCACTCC  150

seq1  ACCAGACATCCCTTCTCCCTGTAGACTTAAGTCTCTTGAGGGTTAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACATCCCTTCTCCCTGTAGACTTAAGTCTCTTGAGGGTTAAATTC  200

seq1  ACCTTCTCCGACTGAGTCCAGACCCGGCAGACCTCTGCTGTATATGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCCGACTGAGTCCAGACCCGGCAGACCTCTGCTGTATATGTGGT  250

seq1  GGGGGGCTTCATATCATCTGGTATATGCTTCCTGGTTGGTGGTTCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGCTTCATATCATCTGGTATATGCTTCCTGGTTGGTGGTTCAGTGT  300

seq1  CTGAGAGATCCTGGAAGGTCCAGGTTAGTCGAGACTGCTGGTCTTTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGATCCTGGAAGGTCCAGGTTAGTCGAGACTGCTGGTCTTTCTAC  350

seq1  AGGTTCTCCCTCTTCCTCTGCTTCTTCCAGCTTTTCCCTAATTCAACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTCCCTCTTCCTCTGCTTCTTCCAGCTTTTCCCTAATTCAACCAC  400

seq1  AGGAGTTCCCAGATTCTGTCCATTGGTTGCATGTAAATTTCTGCATCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTCCCAGATTCTGTCCATTGGTTGCATGTAAATTTCTGCATCTGA  450

seq1  CTCTTTCACCTGCTGGTTAGGTCTTTCAGAGGGCAGTCATGATTGTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCACCTGCTGGTTAGGTCTTTCAGAGGGCAGTCATGATTGTCTCA  500

seq1  TTTTTGTGAGCACAGCATAGCATCAGTAATAGTATCAGGCCTTGATGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGAGCACAGCATAGCATCAGTAATAGTATCAGGCCTTGATGCCT  550

seq1  CTCTTTGAGCTGGATCCCAGTTTGGGCCTGTCACTGGATCTCCTTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAGCTGGATCCCAGTTTGGGCCTGTCACTGGATCTCCTTTTCCT  600

seq1  CAGGCTTCTCTCCATTTTTGTCCCTGCTGTTCTTTCAGACAGTAACAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCTCTCCATTTTTGTCCCTGCTGTTCTTTCAGACAGTAACAATT  650

seq1  ATGAGTCAGAGCTTTTGACTGTGGGATGACCACCCCAACTTTACACTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCAGAGCTTTTGACTGTGGGATGACCACCCCAACTTTACACTTGA  700

seq1  TGTCTTGTCTCTCCACTAGAGGAGGACTCTAT-AAGTTCCCTCTCCTCAC  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTCTTGTCTCTCCACTAGAGGAGGACTCTATAAAGTTCCCTCTCCTCAC  750

seq1  TGCAGGATATTTCATCTAAGGTCCCTCCCTTTGAATCCTGAAATTCTCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATATTTCATCTAAGGTCCCTCCCTTTGAATCCTGAAATTCTCTC  800

seq1  ACCTCCCAGGTCTCTGGTACATTCTAGAAGGTTTTCTCACCTCCTACCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCAGGTCTCTGGTACATTCTAGAAGGTTTTCTCACCTCCTACCTA  850

seq1  ACAAAGTTTCCTGTTTCCATTCTTTTTGCTGGTCCTCAGTGCTTCAGTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTTCCTGTTTCCATTCTTTTTGCTGGTCCTCAGTGCTTCAGTCC  900

seq1  TGCTCCCCACCCCCACAATACCTGATCATGTTCCTTTCTTCCTGTCCTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCACCCCCACAATACCTGATCATGTTCCTTTCTTCCTGTCCTTG  950

seq1  TCCCCTTTTCCATCCAAGTGCCTCCTTCCCCCTCCCTGTAGTGA-TTTTT  998
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  T-CCCTTTTCCATCCAAGTGCCTCCTTCCCCCTCCCTGTAGTGATTTTTT  999

seq1  GAACCTTAATATTTCTAATTATTTTTATTCATAAAGATAGTTGAAACATT  1048
      ||||| | ||||||||||||||||||| |||| |||||||||||||||||
seq2  GAACCCT-ATATTTCTAATTATTTTTA-TCAT-AAGATAGTTGAAACATT  1046

seq1  TTTTGATTCATTATCTTATTAGTTCCCGAAGGTACAAGATACAAATATCG  1098
      ||||||| |||||||||| ||||| |||||||||| ||| ||||||||||
seq2  TTTTGATCCATTATCTTA-TAGTT-CCGAAGGTAC-AGAAACAAATATCG  1093

seq1  AAGGCACATTGGTTTGGTTTTACTTCATTTATTTGATTTTTGAGATAGGC  1148
      || ||||||     ||| |||||||||| || ||||||||  | ||  ||
seq2  AA-GCACAT---GCTGGATTTACTTCATATA-TTGATTTTGAAAAT--GC  1136

seq1  ACATAGTATG  1158
      ||||||||||
seq2  ACATAGTATG  1146