BAC Information

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BAC

Clone NameB6Ng01-208K22
ChromosomeX (Build37)16 (Build37)
Map Location 159,491,921 - 159,492,07115,810,750 - 15,811,885
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208K22.bB6Ng01-208K22.g
ACCGA027496GA027497
length9811,128
definitionB6Ng01-208K22.b B6Ng01-208K22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(159,491,921 - 159,492,071)(15,810,750 - 15,811,885)
sequence
gaattctcgcactattattgtgcgtggtaggatgtgtgctttgagcttta
ataaaggttcaaatgctctttcatttggagcatagaggttcagaattgag
agttcatcttggtagatttttcctttgaccagtatgaagtgtcctttctt
atctttttttgataacttttggttgagagttgattttatttgatattaga
atggctagtccagaggcagaggcaattggatttctgagttcgaggccagc
ctggtctacaaagtgagttccaggacagccagtagggctatacagagaaa
ccctgtctcgaaaaaaccaaaaccaaaacaaacaaacaaacaaaaaaaga
atggctactccagtttagaaagttgttttacaacctttttttttttaatc
aatcccatttttttattagatattttctttatttacatttgaaatgttgt
cccctttccaatttcccccgaaaaatctcctatcctctcaactctccccg
tgctccctaacccacccgctccctattcctggcccaggcattcccctaca
ctggggcatagaaccttcacaggaccaagggcctctcctcccactgatga
ccaactaggccatcttcagctacatatgcagctaaattcacgagtccctc
catgtgttttctttgattggtagtttaatcccagggagctctgggggtac
tggttagttcatatggttgttactcctagggggctgcaaacccgttcagc
tccttgggtactttctctagctccttcattggggaccctgtgctctgtct
aatggatgactgtgagcatccacttctgtatttgtcaggcactggcagaa
ccctctcaggagacagctatatatcagctcctgtcagcaagctcttgttg
gcatctgcaatagtatctgggtttggtggttgtttatgggatggatcccc
aggtggggcagtttctggatggtcatttctt
gaattctgttcccaatacctattgttgaagaccatgaccctgtaatcccc
agggagctggggaggcagggacaggaggaaatgggacagggtagggcttg
ctgcccagtcagtctagctgaattgggaagctctaggttcagggtgacaa
tctgtctcaaaagacaatgtggagagcaggagaggaagatacagggtaca
gggcactgtacacacacaaacacaacaacaaagatcttgctacataaagc
aggtgagtagcagttagtcctttctgaactcttattttcaagtcaaagct
tgggtctatgttttagttataaatctgtaaaaacaggaaggaacctttca
gatggccctgttcttttatagatggggccttccctatacagataggtccc
agaggacaggggcacagtcagcatgtgtatacccaagtgctccatggaac
aagcatacgaaggttgcagggtgttgtatgtgcatacatgaacctctcca
ttcccacctagtcctcaccctaggctaaaataaaaactaagcttaagata
ccaacagatgttatagactgcagcttcatctgtgtagagggtaaacttcc
atataaagtccttatcttggctccttgattgatttggttcttgtttagat
ccagtgtttccactacacccacaaaggagagtaggtaaaagtagcagcac
acatctgtcatcctcagatgcacgagaaagcaagagaatcacatcaagtt
gcaaacagggcagaagtcgaggagtgatgcctgagattgtcctctgactt
ctgcacgcatgatgtgcaaaaacacaaaagtagggaaaaaaccaaaaagc
cataacgtgcattacacacactgagtatacatataagtaaaatgtatctt
taattcctggaaagttctcttccactctcaaggataccaacctcttttgt
cattatgttaaaggtctcctctgaatactgctctataatctgaagtatct
agaaaatttcagcctggctttcagaagagtttaccttaatgctctcagca
attttttccaccacagtgctgataatgcttccattttctaaggatcagac
agcagatgcaacgaaggtagcaaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159491921_159492071
seq2: B6Ng01-208K22.b_256_399

seq1  GAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA  50
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAATTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA  50

seq1  GTGAGTTCTAGGACAGCC---AGAGCTATACAGAGAAACCCTGTCTCGAA  97
      |||||||| |||||||||   || ||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCCAGTAGGGCTATACAGAGAAACCCTGTCTCGAA  100

seq1  AAGACCAAAA-CAAAACAAACAAACAAACAAAAACCCAAAACAAAAAGAA  146
      || ||||||| ||||||||||||||||||||           ||||||||
seq2  AAAACCAAAACCAAAACAAACAAACAAACAA-----------AAAAAGAA  139

seq1  TGGCT  151
      |||||
seq2  TGGCT  144

seq1: chr16_15810750_15811885
seq2: B6Ng01-208K22.g_65_1192 (reverse)

seq1  TTTATGTGCTAACCTTCGTTTCCTTCTTTGCTGTCTTTGATTCTATAG-A  49
      ||||| |||| ||||||||| |    | |||||||  |||| || ||| |
seq2  TTTATTTGCT-ACCTTCGTTGC---ATCTGCTGTC--TGATCCT-TAGAA  43

seq1  AATGGAAGCATATCCAGCACTTGTGGTGGAAAAAA-TGCTGAGAGCATTA  98
      |||||||||||   |||||| |||||||||||||| ||||||||||||| 
seq2  AATGGAAGCATTATCAGCAC-TGTGGTGGAAAAAATTGCTGAGAGCATT-  91

seq1  AAGTTAAACTCTTCTG-AAGCCAGGCTGAAATTTCCTAGATTACTTCAGA  147
      ||| |||||||||||| ||||||||||||||||| ||||| |||||||||
seq2  AAGGTAAACTCTTCTGAAAGCCAGGCTGAAATTTTCTAGA-TACTTCAGA  140

seq1  TTATAGAGCAGTATTCAGAGGAGACCTTAAACATAATGACAAAAGAGGTT  197
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTATAGAGCAGTATTCAGAGGAGACCTTTAACATAATGACAAAAGAGGTT  190

seq1  GGTATCCTTGAGAGTGGAAGAGAACTTTCCAGGAATTAAAGATACATTTT  247
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTATCCTTGAGAGTGGAAGAGAACTTTCCAGGAATTAAAGATACA-TTT  239

seq1  TACTTATATGTATACTCAGTGTGTGTAATGCACGTTATGGCTTTTTGGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATATGTATACTCAGTGTGTGTAATGCACGTTATGGCTTTTTGGTT  289

seq1  TTTTCCCTACTTTTGTGTTTTTGCACATCATGCGTGCAGAAGTCAGAGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTACTTTTGTGTTTTTGCACATCATGCGTGCAGAAGTCAGAGGA  339

seq1  CAATCTCAGGCATCACTCCTCGACTTCTGCCCTGTTTGCAACTTGATGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCAGGCATCACTCCTCGACTTCTGCCCTGTTTGCAACTTGATGTG  389

seq1  ATTCTCTTGCTTTCTCGTGCATCTGAGGATGACAGATGTGTGCTGCTACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTGCTTTCTCGTGCATCTGAGGATGACAGATGTGTGCTGCTACT  439

seq1  TTTACCTACTCTCCTTTGTGGGTGTAGTGGAAACACTGGATCTAAACAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTACTCTCCTTTGTGGGTGTAGTGGAAACACTGGATCTAAACAAG  489

seq1  AACCAAATCAATCAAGGAGCCAAGATAAGGACTTTATATGGAAGTTTACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATCAATCAAGGAGCCAAGATAAGGACTTTATATGGAAGTTTACC  539

seq1  CTCTACACAGATGAAGCTGCAGTCTATAACATCTGTTGGTATCTTAAGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACACAGATGAAGCTGCAGTCTATAACATCTGTTGGTATCTTAAGCT  589

seq1  TAGTTTTTATTTTAGCCTAGGGTGAGGACTAGGTGGGAATGGAGAGGTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTATTTTAGCCTAGGGTGAGGACTAGGTGGGAATGGAGAGGTTC  639

seq1  ATGTATGCACATACAACACCCTGCAACCTTCGTATGCTTGTTCCATGGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCACATACAACACCCTGCAACCTTCGTATGCTTGTTCCATGGAG  689

seq1  CACTTGGGTATACACATGCTGACTGTGCCCCTGTCCTCTGGGACCTATCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGTATACACATGCTGACTGTGCCCCTGTCCTCTGGGACCTATCT  739

seq1  GTATAGGGAAGGCCCCATCTATAAAAGAACAGGGCCATCTGAAAGGTTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGGAAGGCCCCATCTATAAAAGAACAGGGCCATCTGAAAGGTTCC  789

seq1  TTCCTGTTTTTACAGATTTATAACTAAAACATAGACCCAAGCTTTGACTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTTTACAGATTTATAACTAAAACATAGACCCAAGCTTTGACTT  839

seq1  GAAAATAAGAGTTCAGAAAGGACTAACTGCTACTCACCTGCTTTATGTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGAGTTCAGAAAGGACTAACTGCTACTCACCTGCTTTATGTAG  889

seq1  CAAGATCTTTGTTGTTGTGTTTGTGTGTGTACAGTGCCCTGTACCCTGTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTTTGTTGTTGTGTTTGTGTGTGTACAGTGCCCTGTACCCTGTA  939

seq1  TCTTCCTCTCCTGCTCTCCACATTGTCTTTTGAGACAGATTGTCACCCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTCCTGCTCTCCACATTGTCTTTTGAGACAGATTGTCACCCTG  989

seq1  AACCTAGAGCTTCCCAATTCAGCTAGACTGACTGGGCAGCAAGCCCTACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGAGCTTCCCAATTCAGCTAGACTGACTGGGCAGCAAGCCCTACC  1039

seq1  CTGTCCCATTTCCTCCTGTCCCTGCCTCCCCAGCTCCCTGGGGATTACAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCATTTCCTCCTGTCCCTGCCTCCCCAGCTCCCTGGGGATTACAG  1089

seq1  GGTCATGGTCTTCAACAATAGGTATTGGGAACAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGGTCTTCAACAATAGGTATTGGGAACAGAATTC  1128