BAC Information

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BAC

Clone NameB6Ng01-209J11
ChromosomeX (Build37)9 (Build37)
Map Location 162,575,762 - 162,576,60695,897,823 - 95,898,388
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGlra2, LOC100040753
Downstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209J11.bB6Ng01-209J11.g
ACCGA028169GA028170
length835847
definitionB6Ng01-209J11.b B6Ng01-209J11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(162,575,762 - 162,576,606)(95,897,823 - 95,898,388)
sequence
gaattccttcacccccaacaaagatgcttgttgtctccttcaattccatt
tctgccctgttctaatttctattgtagctctttctgattcttgaagtttc
taaaagtggaatcaaacagtaacaatcttggaattcacctatgttgttca
tgtcattgtaatttactcatttttatttcagagtcattttccacagcatg
agtgccatggtattcaattgtatgattagttcacatttggttttcgcaaa
tttctgtgtcaatgttgagtagaatctgggataagtagtagagagctaaa
aagtatcctctgggaagacagaataactgaaaaggtgaaggctgcagcac
ttacaagctgctatggtttgtatatgcttggcccagggattaacactatt
agcacgtgtggccttattagagtaagtgtatcactgtgctatggacttta
agaccctcggcctaaaaggaaaagaaaaagaaaaagaaaaagaaaaagaa
aaagaaaaagaaaaagaaaaggaaaaggaaaaggaaaaggaaaaggaaaa
ggaaaaagaaaaagaaaaagaaaaagaaaaagaaaaggaaaaggaaaagg
aaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaa
aaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaagaaaaagaaaag
gaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaagga
aaaagaaaaagaaaagaaaaagaaaagaaaaagaaaagaaaagaaaagaa
aagaaaggaaaggaaaaggaaaggaaaggaaagaa

gaattcaaggccagcctgatctacagagtgagttccaggacagccagggc
tatacagagaaaccctgtctcgaaaaaccaaaataaatagataaataaat
aaaatacggatagtgtttctcttgtgggtgatgaaaatgtcttggaactt
gggtagtacaagactgacaaagtgctacttaacacaacttaactttatat
ttcaacatgatccactttgttatataagctcaatttttctttttcttttt
tatatctttattagttgcagatagccctggggctaatggcatttgatgtt
aattctgttttcctgtgaggggttgagaacaaggaatgagtcagcactca
ggtgatttcctgtaaacctgtttcccaccttaatttataaataaaggcta
gagtcagtgattgggcagagaaagaggggaaggtggagctgaagtttttg
ggagcaaaggagagagagagagaggaggaaaaaggagagtggagtagaag
cacctggcctggagaaaccacaagttctaaggggtctcttatatggggaa
gatggtagtgcagtggtagatctgcccaaactaggtacacagcatggatt
cataataattgagttgtgttttcattgcccgggcttatatgggttggaag
cttaccacaatatttatttatagcatgtgaatgtttatgcatgtatatct
gttcaccacttgtgtgcctggtctctgtggaggtcagaattaggcatcag
atctcctggaacaagtgttacaggtggctgtgagctaccaggtgggtgct
aggaatagaaccctggtcttcctcaagagcagccaagtgctcttaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_162575762_162576606
seq2: B6Ng01-209J11.b_44_877

seq1  GAATTCCTTCACCCCCAACAAAGATGCTTGTTGTCTCCTTCAATTCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCACCCCCAACAAAGATGCTTGTTGTCTCCTTCAATTCCATT  50

seq1  TCTGCCCTGTTCTAATTTCTATTGTAGCTCTTTCTGATTCTTGAAGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTGTTCTAATTTCTATTGTAGCTCTTTCTGATTCTTGAAGTTTC  100

seq1  TAAAAGTGGAATCAAACAGTAACAATCTTGGAATTCACCTATGTTGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGGAATCAAACAGTAACAATCTTGGAATTCACCTATGTTGTTCA  150

seq1  TGTCATTGTAATTTACTCATTTTTATTTCAGAGTCATTTTCCACAGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGTAATTTACTCATTTTTATTTCAGAGTCATTTTCCACAGCATG  200

seq1  AGTGCCATGGTATTCAATTGTATGATTAGTTCACATTTGGTTTTCGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCATGGTATTCAATTGTATGATTAGTTCACATTTGGTTTTCGCAAA  250

seq1  TTTCTGTGTCAATGTTGAGTAGAATCTGGGATAAGTAGTAGAGAGCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTCAATGTTGAGTAGAATCTGGGATAAGTAGTAGAGAGCTAAA  300

seq1  AAGTATCCTCTGGGAAGACAGAATAACTGAAAAGGTGAAGGCTGCAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCCTCTGGGAAGACAGAATAACTGAAAAGGTGAAGGCTGCAGCAC  350

seq1  TTACAAGCTGCTATGGTTTGTATATGCTTGGCCCAGGGATTAACACTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGCTGCTATGGTTTGTATATGCTTGGCCCAGGGATTAACACTATT  400

seq1  AGCACGTGTGGCCTTATTAGAGTAAGTGTATCACTGTGCTATGGACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTGTGGCCTTATTAGAGTAAGTGTATCACTGTGCTATGGACTTTA  450

seq1  AGACCCTCGGCCTAAAAGGAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTCGGCCTAAAAGGAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAA  500

seq1  AAAGAAAAAGAAAAAGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGAAAAAGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAA  550

seq1  GGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAGGAAAAGGAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAGGAAAAGGAAAAGG  600

seq1  AAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAA  650

seq1  AAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAA  700
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAG-AAAAGAAAAAGAAAA  699

seq1  GGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGG  749

seq1  AAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAA  800
      |||||||||||| ||||||||||| |||||||||||||||   |||||||
seq2  AAAAAGAAAAAG-AAAAGAAAAAG-AAAAGAAAAAGAAAA--GAAAAGAA  795

seq1  AAAGAAAAAGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAA  845
      ||   ||||||||  | ||||||||||||||  | |||||||| |
seq2  AA--GAAAAGAAA--GGAAAGGAAAAGGAAA--GGAAAGGAAAGA  834


seq1: chr9_95897823_95898388
seq2: B6Ng01-209J11.g_71_314 (reverse)

seq1  AAAATAAGAAAAAGAAAAAATTTTATACCTATAAATGAGTTTGGGGAAGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTTAATCCATGAATGCAATATGCTTCTCCATTATTTACATCTTTGATT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTAATTAGTGTTTTATCTTTTCATTATGCAGGCAACATTTGCATCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTCTGTTTATTTCTAAATATTTCATGTTATGTTCATTAAATATTTATG  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTAAATATTTCATCTTTTCTTGGGGTGAGACAGGATCTTGCTGTGTTA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGTAGGCTGGTCTCAAATTCATGGAATCAAGATATCTTCTTCCCCCTAAT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTCAAATTGCTGGGCATCCAGGGACATACCAACATGCAAAACATAGGA  350
                                      || | | |||| |    |
seq2  -------------------------------AAAAAAGAAAAAGA---AA  16

seq1  AATTCCCACACATCTT-TATTCTCTAGT-----TTTTTG--TTTTTTGGT  392
      ||||       | ||| |||     |||      | |||   | |   ||
seq2  AATT------GAGCTTATATAACAAAGTGGATCATGTTGAAATATAAAGT  60

seq1  TTGGTTTGGTTTGGTTTGGTTTTG---GTTTTTTGAGACAGGGTTTCTCT  439
      |  |||  |||  ||     ||||   || || |   ||     |||   
seq2  TAAGTTGTGTTAAGTAGCACTTTGTCAGTCTTGTACTACCCAAGTTCCAA  110

seq1  GTTATTCTCTT--------AGGGGTTTTTTGTTTGTTTGTTTGTTTGTTT  481
      |  ||| || |        || |      | |  || | ||| ||| |||
seq2  GACATTTTCATCACCCACAAGAGAAACACTATCCGTAT-TTTATTTATTT  159

seq1  GTTTTGTTTTGTTTTG--TTTTTGAGACAGGGTTTCTCTGTATAGCTCTG  529
       | |   ||| |||||  |||| ||||||||||||||||||||||| |||
seq2  ATCT--ATTTATTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTG  207

seq1  GCTGTCCTGGAACTCACTTTGTAGACCAGGCTAGCCT  566
      |||||||||||||||||| |||||| |||||| ||||
seq2  GCTGTCCTGGAACTCACTCTGTAGATCAGGCTGGCCT  244


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