BAC Information

Click to search

BAC

Clone NameB6Ng01-210I11
ChromosomeX (Build37)
Map Location 71,030,913 - 71,177,494
singlet/doubletdoublet
Overlap geneIdh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp
Upstream geneGabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3
Downstream geneHcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210I11.bB6Ng01-210I11.g
ACCGA028845GA028846
length1,1701,026
definitionB6Ng01-210I11.b B6Ng01-210I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,030,913 - 71,032,092)(71,176,477 - 71,177,494)
sequence
gaattccaaggattaaacttggtatccaagcttggaggcaggtgccttta
cccactcagccatctggctgaaccagaagtccctattttaaatagaattt
catgtagcatatgtagctcccttccccaaacaaaacaagacaaaacaaaa
aagcccccaagaccccaacaacaacaacaacaaaaaaccccatggcattc
tggaaggtcagagtcagcaaatgctttgagaacataaagtcctctctcct
cactggaacccagagagaaaagagagctggcctaatgccatattctaggt
cagtggaagagcaaggcctagaggtcatagctcttattccccagagctag
ttgttggttttctggtgctaagcagtgctacccaggagctaaaccagcta
accaagactccaaagaaagaaccaggaaagcaaagccctagaagcttcca
gtcttagaaccctggttcactctcattacaggggtttgggcttgtttgtt
ggccttttggttagaatcaagtatctaggtgcttggtaggcggaagatct
ggagggatcaaggattatggatagccagatggcggcggtgcatgccttta
attaatcccagcacttgggagacagaggcaggaggatttctgaattcaag
gccagcctggtctacagtgtgagttccaggctacagagagaaaccgcgtg
ttcgacgagacagagagaaaccgggagagggaacgcggggacacagcgag
agacacacagcgagagagatactgataaagtctgattttccacctccact
agggcaaagcagtctaagagagggaaaccaaggaggaactgagtccagaa
acaggcttagatggtacatgcaagtgggccaggacacgtggcctcttcaa
agggcttccacaaggacactacggaggggacacctagctactgcgtctac
cttcccaacctttccggaggaaggcacagaggagccagatcagagtcaat
ttcggccaacgctcacggacagcagaagcaaccagtgaccccagagtgca
gccctctccccgccccttctatgctcgcacaggcaatcgaattccgtgtt
tgcctcaaagagccggtaaccgacttcgggtctcaattgggtgtagtcct
cctgtagcctgcaattgtcc
gaattctttttactgaccaactcccaaagcagcattgatgagtcaggaag
tctagttactttacactcctgggttgcagtccatcattaagaacatgttc
aaggaactggagtgatgactcagcagttaagtgcactgtctgttcttcca
gaggccccaggttccatttccagaacccacgtggagactcacaaccagct
gtaagtccaggtccagaggatccaataccctcttttggcctctaaggata
ctgcatgcatgtggtgcacagacatacatagaggcaaaagcaaaagcaaa
caaaaaataaaccaccaccaccaacaacaacaacaaaacactgaaacata
aaataaaatgacaaaagaaaatgcaggcagtggtggctcacgcctttaat
cccagcacttgggaggcagaggcaggcagatttctgagttcgaggccagc
ctggtccccagagtgagttccaggacagccagggctacacagagaaaccc
tgtctcgaaaaaacaaacaaacaaataaaaaaagacaaaagaagggctgg
tgagatggctcagtgggtaagagcaccagactgctcttctgaaggtccga
agttcaaatcccagcaaccacatggtggctcacaaccatccgtaatgaga
tctgacgccctcttctggagtgtctgaagacagctacagtgtacttacat
ataataaataataaataaatcttaaaaaatgttttaaaaaaaagacaaaa
gaaaatcagaacaagtacctctggcatttctggtttgaaattctcactcc
acagaattctgctgagcaatgagggtgcccagtgggtagcaagaatgggg
gaacagattaaaccagcctgtcacagagccaacctatactgtgtacctag
gaaggaagggcccagagagctggaggatgcccactctactcctgcatggt
tatcactgtttttcagtattcatcctttggggggtgagtatccagcaact
ggcaacaggggcctatgggttgtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71030913_71032092
seq2: B6Ng01-210I11.b_44_1213

seq1  GAATTCCAAGGATTAAACTTGGTATCCAAGCTTGGAGGCAGGTGCCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGATTAAACTTGGTATCCAAGCTTGGAGGCAGGTGCCTTTA  50

seq1  CCCACTCAGCCATCTGGCTGAACCAGAAGTCCCTATTTTAAATAGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCAGCCATCTGGCTGAACCAGAAGTCCCTATTTTAAATAGAATTT  100

seq1  CATGTAGCATATGTAGCTCCCTTCCCCAAACAAAACAAGACAAAACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCATATGTAGCTCCCTTCCCCAAACAAAACAAGACAAAACAAAA  150

seq1  AAGCCCCCAAGACCCCAACAACAACAACAACAAAAAACCCCATGGCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCCAAGACCCCAACAACAACAACAACAAAAAACCCCATGGCATTC  200

seq1  TGGAAGGTCAGAGTCAGCAAATGCTTTGAGAACATAAAGTCCTCTCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTCAGAGTCAGCAAATGCTTTGAGAACATAAAGTCCTCTCTCCT  250

seq1  CACTGGAACCCAGAGAGAAAAGAGAGCTGGCCTAATGCCATATTCTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAACCCAGAGAGAAAAGAGAGCTGGCCTAATGCCATATTCTAGGT  300

seq1  CAGTGGAAGAGCAAGGCCTAGAGGTCATAGCTCTTATTCCCCAGAGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAGCAAGGCCTAGAGGTCATAGCTCTTATTCCCCAGAGCTAG  350

seq1  TTGTTGGTTTTCTGGTGCTAAGCAGTGCTACCCAGGAGCTAAACCAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTTTTCTGGTGCTAAGCAGTGCTACCCAGGAGCTAAACCAGCTA  400

seq1  ACCAAGACTCCAAAGAAAGAACCAGGAAAGCAAAGCCCTAGAAGCTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGACTCCAAAGAAAGAACCAGGAAAGCAAAGCCCTAGAAGCTTCCA  450

seq1  GTCTTAGAACCCTGGTTCACTCTCATTACAGGGGTTTGGGCTTGTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGAACCCTGGTTCACTCTCATTACAGGGGTTTGGGCTTGTTTGTT  500

seq1  GGCCTTTTGGTTAGAATCAAGTATCTAGGTGCTTGGTAGGCGGAAGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTTGGTTAGAATCAAGTATCTAGGTGCTTGGTAGGCGGAAGATCT  550

seq1  GGAGGGATCAAGGATTATGGATAGCCAGATGGCGGCGGTGCATGCCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGATCAAGGATTATGGATAGCCAGATGGCGGCGGTGCATGCCTTTA  600

seq1  ATTAATCCCAGCACTTGGGAGACAGAGGCAGGAGGATTTCTGAATTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCCCAGCACTTGGGAGACAGAGGCAGGAGGATTTCTGAATTCAAG  650

seq1  GCCAGCCTGGTCTACAGTGTGAGTTCCAGGCTACAGAGAGAAACCGCGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACAGTGTGAGTTCCAGGCTACAGAGAGAAACCGCGTG  700

seq1  TTCGACGAGACAGAGAGAAACCGGGAGAGGGAACGCGGGGACACAGCGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGACGAGACAGAGAGAAACCGGGAGAGGGAACGCGGGGACACAGCGAG  750

seq1  AGACACACAGCGAGAGAGATACTGATAAAGTCTGATTTTCCACCTCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACAGCGAGAGAGATACTGATAAAGTCTGATTTTCCACCTCCACT  800

seq1  AGGGCAAAGCAGTCTAAGAGAGGGAAAACCAAGGAGGAACTGAGTCCAGA  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGGCAAAGCAGTCTAAGAGAGGG-AAACCAAGGAGGAACTGAGTCCAGA  849

seq1  AACAGGCTTAGATGGTACATGCAAGGTGGGCCAGGACACGTGGCCTCTTC  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AACAGGCTTAGATGGTACATGCAA-GTGGGCCAGGACACGTGGCCTCTTC  898

seq1  AAAAGGGCTTCCACAAGGACACTACGGAGGGGACACCTAGCTACTGCGGT  950
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  -AAAGGGCTTCCACAAGGACACTACGGAGGGGACACCTAGCTACTGC-GT  946

seq1  CTACCTTCCCAACCCTTCCGGAGGAAGGCACAGAGGAGCCAGATCAGAGT  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTACCTTCCCAACCTTTCCGGAGGAAGGCACAGAGGAGCCAGATCAGAGT  996

seq1  CAATTTCGGCCAACCGCCTCACGGACAGCAGAAGCAACCAGTGAACCCCA  1050
      ||||||||||||||   |||||||||||||||||||||||||| ||||||
seq2  CAATTTCGGCCAAC--GCTCACGGACAGCAGAAGCAACCAGTG-ACCCCA  1043

seq1  GAGTGCAGCCCTCTCCCCGCCCCTCCTATGGCTCGCACAGCCAATCGAAT  1100
      |||||||||||||||||||||||| |||| |||||||||| |||||||||
seq2  GAGTGCAGCCCTCTCCCCGCCCCTTCTAT-GCTCGCACAGGCAATCGAAT  1092

seq1  TCCGTGTTTG-CTCAAAGAGCCGTTACCCGACTCCGGGTCTCAATTGGGT  1149
      |||||||||| |||||||||||| || |||||| ||||||||||||||||
seq2  TCCGTGTTTGCCTCAAAGAGCCGGTAACCGACTTCGGGTCTCAATTGGGT  1142

seq1  GTTAAGTCCCTCTGTAAGCCTGCAAATGTCC  1180
      ||  |||||  |||| ||||||||| |||||
seq2  GT--AGTCCTCCTGT-AGCCTGCAATTGTCC  1170

seq1: chrX_71176477_71177494
seq2: B6Ng01-210I11.g_64_1089 (reverse)

seq1  TTTACAA-CCATTAGCCCTGGTTGCCAGTTGCTGGATACTTCACCCCC--  47
      ||||||| ||||  ||||  ||||||||||||||||||| ||||||||  
seq2  TTTACAACCCATAGGCCCCTGTTGCCAGTTGCTGGATAC-TCACCCCCCA  49

seq1  AAGGATGATTCTGGAAAAACAGGTGATAACCATGCA-GAGTAGAGTGGGC  96
      |||||||| |   |||||||| |||||||||||||| |||||||||||||
seq2  AAGGATGAATACTGAAAAACA-GTGATAACCATGCAGGAGTAGAGTGGGC  98

seq1  ATCCTCCAGCTCTCT-GGCCCTTCC-TCCTAGGTACACAGTATAGGTTGG  144
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  ATCCTCCAGCTCTCTGGGCCCTTCCTTCCTAGGTACACAGTATAGGTTGG  148

seq1  CTCTGTGACAGGCTGG-TTAATCTGTT-CCCCATTCTTGCTACCCACTGG  192
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CTCTGTGACAGGCTGGTTTAATCTGTTCCCCCATTCTTGCTACCCACTGG  198

seq1  GCACCCTCATTGCTCAGCAGAATTCTGTGGAGTGAGAATTTC-AACCAG-  240
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  GCACCCTCATTGCTCAGCAGAATTCTGTGGAGTGAGAATTTCAAACCAGA  248

seq1  AATGCCAGAGGTACTTGTTCTGATTTTCTTTTGTCTTTTTTTTAAAACAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGAGGTACTTGTTCTGATTTTCTTTTGTCTTTTTTTTAAAACAT  298

seq1  TTTTTAAGATTTATTTATTATTTATTATATGTAAGTACACTGTAGCTGTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGATTTATTTATTATTTATTATATGTAAGTACACTGTAGCTGTC  348

seq1  TTCAGACACTCCAGAAGAGGGCGTCAGATCTCATTACGGATGGTTGTGAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACTCCAGAAGAGGGCGTCAGATCTCATTACGGATGGTTGTGAG  398

seq1  CCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCAGAAGAGCAGTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCAGAAGAGCAGTC  448

seq1  TGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTTCTTTTGTCTTTTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTTCTTTTGTCTTTTT  498

seq1  TTATTTGTTTGTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTGTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGG  548

seq1  CTGTCCTGGAACTCACTCTGGGGACCAGGCTGGCCTCGAACTCAGAAATC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACTCACTCTGGGGACCAGGCTGGCCTCGAACTCAGAAATC  598

seq1  TGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGAGCCACCACT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGAGCCACCACT  648

seq1  GCCTGCATTTTCTTTTGTCATTTTATTTTATGTTTCAGTGTTTTGTTGTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATTTTCTTTTGTCATTTTATTTTATGTTTCAGTGTTTTGTTGTT  698

seq1  GTTGTTGGTGGTGGTGGTTTATTTTTTGTTTGCTTTTGCTTTTGCCTCTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGGTGGTGGTGGTTTATTTTTTGTTTGCTTTTGCTTTTGCCTCTA  748

seq1  TGTATGTCTGTGCACCACATGCATGCAGTATCCTTAGAGGCCAAAAGAGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCTGTGCACCACATGCATGCAGTATCCTTAGAGGCCAAAAGAGG  798

seq1  GTATTGGATCCTCTGGACCTGGACTTACAGCTGGTTGTGAGTCTCCACGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGATCCTCTGGACCTGGACTTACAGCTGGTTGTGAGTCTCCACGT  848

seq1  GGGTTCTGGAAATGGAACCTGGGGCCTCTGGAAGAACAGACAGTGCACTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGGAAATGGAACCTGGGGCCTCTGGAAGAACAGACAGTGCACTT  898

seq1  AACTGCTGAGTCATCACTCCAGTTCCTTGAACATGTTCTTAATGATGGAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGAGTCATCACTCCAGTTCCTTGAACATGTTCTTAATGATGGAC  948

seq1  TGCAACCCAGGAGTGTAAAGTAACTAGACTTCCTGACTCATCAATGCTGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCCAGGAGTGTAAAGTAACTAGACTTCCTGACTCATCAATGCTGC  998

seq1  TTTGGGAGTTGGTCAGTAAAAAGAATTC  1018
      ||||||||||||||||||||||||||||
seq2  TTTGGGAGTTGGTCAGTAAAAAGAATTC  1026