BAC Information

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BAC

Clone NameB6Ng01-210N09
ChromosomeX (Build37)1 (Build37)
Map Location 95,366,543 - 95,367,698177,165,048 - 177,165,586
singlet/doubletsingletsinglet
Overlap geneAr
Upstream geneEda2r, LOC668244
Downstream geneLOC100042324, Ophn1, Yipf6, LOC100042932, Stard8, LOC436219, Efnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210N09.bB6Ng01-210N09.g
ACCGA029067GA029068
length1,128925
definitionB6Ng01-210N09.b B6Ng01-210N09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,366,543 - 95,367,698)(177,165,048 - 177,165,586)
sequence
gaattctgaagaaaatgtacacctaaaattctacatacatattaaacaag
taaatacaacctatcatatccatttatgtcatctttaatgtattcctgtg
ttctgtgtctttaagtcagcctacaagtcccatatcatttaagacatatc
tgtgataactcttcaaaacaaatagccaaaattagagaagtaaccccact
aaccaggtaataagacttcccagtaaaagaagtatgttttagaccatcaa
tattctgaatttctataagacaatataatatcaaaacagaaaccttcaca
cttaattcaacaacaatgaaatcatcatgaaaagatttacaatacataca
ttatttcttggcattacgatcagtatgtacaattttaaatccattatttc
attattttatttgttcatgtatgtgtgcatgttattactatactggtcac
ccctccatgctcctaatcacactgccccaaattgctacatgctaaaagaa
taaaccaagaaaattgggttagatgtctaccagataatgccgagattata
tcctacagatcacagtccaaagcttttagcacacactttcttacaagaag
cacctccagttttttgatgcagggtttctcttgtttctgatgctttgttg
cacactacagtgaagctggtctatgagcctctcctgtctctgttatttaa
cttgttgtagatgtgctgagatgacaaatgcatcctacagcatggggcct
ttttgcatgacttcccggatatgaattcaggtcagcaggctctttgcaaa
gcagtgtccctgaaactcccacttgtgaagctagagtaccataggaaggg
gggtgatgtttcagtgtctgtacaaagtcctttgtaaaaacattctctgg
ctgcttggggacaactttgacttagaaactcttaagagctgcatgctttc
aaacatacagaagagaaaagagagctttgcaattagtacaaatttctccc
tgggcacagtagtgtgacaggcagaggcaggtaagaactcagaatgtgag
agattgaatttctctgatttagagaccaagtacaaccaagttatggggca
caatttcttagtttccagtgatcccact

gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tcaaatgcgttttccacatctaaggagatgatcatgtggtttttgacttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatcactggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcagttaatgagaattttattgagtatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttggat
ctttctgtggtttagctatcagagtaattgtggcttcatagaatgagttg
ggtagagttccctctacttctattttgtggaatagtttgtgcagaactgg
aattagatcttctttgaaggtctggtagaactctgcactaaacccatatg
gtcctgggctttttttgggtggaagactataaatgactgcttctatttct
ttaggggatataggactgtttaaattgttaacttgatcctgatttaactt
tggtacctggtatctgtctagaaacttttacatttcatccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
tagaatgttgtccctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgatatt
tcctgccatctactctctttggtgattttcatccttttttctggagcttt
tagaatgtgttgcaagctgcctagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_95366543_95367698
seq2: B6Ng01-210N09.b_46_1173 (reverse)

seq1  AGTGGGATCACCTGAAAACTAAAGAATTTGTGCCCCATAAACTTTGTTTG  50
      |||||||||| ||| ||||| ||||| ||||||||||| ||||| |||  
seq2  AGTGGGATCA-CTGGAAACT-AAGAAATTGTGCCCCAT-AACTTGGTT--  45

seq1  GTACTGTGGGTCTCTAAATCAGAGAAAATTCAATCTCCTCACATATCTTG  100
      ||||  | |||||||||||||||| ||||||||||| ||||||| || ||
seq2  GTAC--TTGGTCTCTAAATCAGAG-AAATTCAATCT-CTCACAT-TC-TG  89

seq1  AGTTTCTTTACCTGCCTCTTCCCTGTCCACAACTTACTGTGCCCAGGGAG  150
      ||||   ||||||||||| | ||||| ||||   ||||||||||||||||
seq2  AGTT--CTTACCTGCCTC-TGCCTGT-CACA--CTACTGTGCCCAGGGAG  133

seq1  AAATTTTGTTACCTATTTGCAAAGCTCTCTTTTTTCTTCTTCTGTATGTT  200
      ||| |||||   ||| |||||||||||||||||    ||||||||||| |
seq2  AAA-TTTGT--ACTAATTGCAAAGCTCTCTTTT---CTCTTCTGTATG-T  176

seq1  TTGAAAGCATTGCAGCTCTTTAGAGGTTTTCTAAGTCAAAGTTTGTCCCC  250
      ||||||||| |||||||||| ||||  |||||||||||||| ||||||||
seq2  TTGAAAGCA-TGCAGCTCTTAAGAG--TTTCTAAGTCAAAG-TTGTCCCC  222

seq1  AAGCAGCCAGAGAATGTTTTTACAAAGGACTTTGTACAGACACTGAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCAGAGAATGTTTTTACAAAGGACTTTGTACAGACACTGAAACA  272

seq1  TCACCCCCCTTCCTATGGTACTCTAGCTTCACAAGTGGGAGTTTCAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCCCTTCCTATGGTACTCTAGCTTCACAAGTGGGAGTTTCAGGGA  322

seq1  CACTGCTTTGCAAAGAGCCTGCTGACCTGAATTCATATCCGGGAAGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTTGCAAAGAGCCTGCTGACCTGAATTCATATCCGGGAAGTCAT  372

seq1  GCAAAAAGGCCCCATGCTGTAGGATGCATTTGTCATCTCAGCACATCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAGGCCCCATGCTGTAGGATGCATTTGTCATCTCAGCACATCTAC  422

seq1  AACAAGTTAAATAACAGAGACAGGAGAGGCTCATAGACCAGCTTCACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTTAAATAACAGAGACAGGAGAGGCTCATAGACCAGCTTCACTGT  472

seq1  AGTGTGCAACAAAGCATCAGAAACAAGAGAAACCCTGCATCAAAAAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCAACAAAGCATCAGAAACAAGAGAAACCCTGCATCAAAAAACTG  522

seq1  GAGGTGCTTCTTGTAAGAAAGTGTGTGCTAAAAGCTTTGGACTGTGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTTCTTGTAAGAAAGTGTGTGCTAAAAGCTTTGGACTGTGATCT  572

seq1  GTAGGATATAATCTCGGCATTATCTGGTAGACATCTAACCCAATTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATATAATCTCGGCATTATCTGGTAGACATCTAACCCAATTTTCTT  622

seq1  GGTTTATTCTTTTAGCATGTAGCAATTTGGGGCAGTGTGATTAGGAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATTCTTTTAGCATGTAGCAATTTGGGGCAGTGTGATTAGGAGCAT  672

seq1  GGAGGGGTGACCAGTATAGTAATAACATGCACACATACATGAACAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGTGACCAGTATAGTAATAACATGCACACATACATGAACAAATAA  722

seq1  AATAATGAAATAATGGATTTAAAATTGTACATACTGATCGTAATGCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGAAATAATGGATTTAAAATTGTACATACTGATCGTAATGCCAAG  772

seq1  AAATAATGTATGTATTGTAAATCTTTTCATGATGATTTCATTGTTGTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGTATGTATTGTAAATCTTTTCATGATGATTTCATTGTTGTTGA  822

seq1  ATTAAGTGTGAAGGTTTCTGTTTTGATATTATATTGTCTTATAGAAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGTGAAGGTTTCTGTTTTGATATTATATTGTCTTATAGAAATTC  872

seq1  AGAATATTGATGGTCTAAAACATACTTCTTTTACTGGGAAGTCTTATTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTGATGGTCTAAAACATACTTCTTTTACTGGGAAGTCTTATTAC  922

seq1  CTGGTTAGTGGGGTTACTTCTCTAATTTTGGCTATTTGTTTTGAAGAGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAGTGGGGTTACTTCTCTAATTTTGGCTATTTGTTTTGAAGAGTT  972

seq1  ATCACAGATATGTCTTAAATGATATGGGACTTGTAGGCTGACTTAAAGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGATATGTCTTAAATGATATGGGACTTGTAGGCTGACTTAAAGAC  1022

seq1  ACAGAACACAGGAATACATTAAAGATGACATAAATGGATATGATAGGTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACACAGGAATACATTAAAGATGACATAAATGGATATGATAGGTTG  1072

seq1  TATTTACTTGTTTAATATGTATGTAGAATTTTAGGTGTACATTTTCTTCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTTGTTTAATATGTATGTAGAATTTTAGGTGTACATTTTCTTCA  1122

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1128


seq1: chr1_177165048_177165586
seq2: B6Ng01-210N09.g_452_987 (reverse)

seq1  ACTA-GCAGCTTGACAACACA-TCTAAAAGCTCCAGAAAAAAAGGAAGCA  48
      |||| |||||||| ||||||| |||||||||||||| ||||||||| | |
seq2  ACTAGGCAGCTTG-CAACACATTCTAAAAGCTCCAG-AAAAAAGGATG-A  47

seq1  AATTCACCCAAGAGGAGTAGTCGGCAGGAAATAATCAAACTCAGGGGTGA  98
      || ||||| |||| ||||||  |||||||||| |||||||||||||||||
seq2  AAATCACCAAAGA-GAGTAGATGGCAGGAAAT-ATCAAACTCAGGGGTGA  95

seq1  AATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGA  145

seq1  GGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGA  195

seq1  CTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAACTGA  248
      ||||||| ||||||||||||||| || ||||||||||||||||||| |||
seq2  CTCACTAGAGGGCACAGGGACAACATTCTAATTAACAAAATCAGAAATGA  245

seq1  AAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGAT  295

seq1  CCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACCAAATG  348
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  CCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATG  345

seq1  GACAAACTTCTGGACAGATACCAGGTACCAAAGTTGTGTCTGGATCAAGT  398
       | ||  |||| |||||||||||||||||||||||   || |||||||||
seq2  TAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAAGT  395

seq1  TGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTA  448
      | || || |||||||||| ||||| |||||||||||||||||||| ||| 
seq2  TAACAATTTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTT  445

seq1  ATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAG  498
      ||||||| ||| |||||||||||||||||||| | |||||||||||||||
seq2  ATAGTCTTCCACCCAAAAAAAGCCCAGGACCATATGGGTTTAGTGCAGAG  495

seq1  TTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCA  539
      ||||| |||||||||||||||||||||||||||||||||||
seq2  TTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCA  536


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