BAC Information

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BAC

Clone NameB6Ng01-214A05
ChromosomeX (Build37)X (Build37)
Map Location 38,446,264 - 38,447,49938,649,568 - 38,650,316
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG245391, LOC100039769
Downstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214A05.bB6Ng01-214A05.g
ACCGA031379GA031380
length1,220984
definitionB6Ng01-214A05.b B6Ng01-214A05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,446,264 - 38,447,499)(38,649,568 - 38,650,316)
sequence
gaattcaaaagatgagctgtcttctagaatatggatttttacattaaaaa
tatttccatatttccaggtgtgtaaatttagttcaactgtgttctaaagc
aaatagataaatttcaagccttcaaaaattgtttctgaagtatacaaaaa
ggaaataagatgaatttatgtcatttgacatcatatatattacagacaca
acactaacaggacaatggaaaaattaaatagaaacataccagtaaaaaaa
taggaaaacttaggatatacttaactattaagagatctagtaacagtgat
agcaaaatgcactcataatagacattttattatttaccatgatttagaaa
catacctaaaaataccaaatttgaattccatgtggaagaatgaaaggaag
agtgattttaaaggtaatttcacatgtagctgctatttcagtgagtgtgg
gaactttataaacatgaagaaataaattttagagtatgaattcttaattt
tatacatgtcaaatggcaccatagataaaattaaaagacaataaggaaga
aaatgtttagaacataccaaaagactttatatattaaacataatatataa
tattcaacatatggaaattggaaataatttcataagtagaagtatataaa
ctgaacaacaaatttaaaatcaagattaatccttaaaaatcataccataa
ttattgatataattatcctgtgaagtactgagagtatagtctaacaagga
ttttcacaactagtggtatgaatagaaactgcacaatatttctgaaggca
acttgttataagtattctccctcacataccttaaataaaagcacaaaata
tctacatatctgagttggcagtccaacaagagttataatataatataaaa
aagaataccttatttctttttcataatttttcattaattaattaattaat
ttgcatccttatcacatctactctgctctccttccagcccctacttctcc
ctgcccttctcatcctccagtcctccctttatctcagaacaggggagacc
tcccatgtataccaacttctctatgaaactagacaggcagaccacttagg
agaaaataggtattcttttaagatatttagtaaatacaaatatctcaatc
tacttataatattacctatactaaccgtttacagtaaccgttttaatacc
taaggtaacgtgtataaagt

gaattctttgtttagctctgagccccaaattttaatggggttatttgatt
tcctggagtccatcttcttgatatatatatatatatatatatgtatacat
atatatgtatatgtatattggatattagtcccctatctgatttaggatgt
gtaaatatccttttccaatctgttggtggcctttttgtcttattgacagt
gtcttttgccttacagaagctttgcaattttttttttttagtgtgcagct
tttttttattacgtattttcctcaattacatttccaatgctatcccaaaa
gtcccccatactctcaccccccacttccctacccacccattcctattttt
ttggccctggcgttcccctgtactggggcatataaagtttgtgtgtccaa
tgggcctctctttccactgatggccgactaggccatcttttgatacatat
gcagctagagtcaagagctcccaggtactggtaagcttgtacaatcactc
tggaaatcagtctggtggttccttagaaaattggacatagtactaccgga
ggatccagcaatacctctcgtgggcatatatccagaaaatgtcccaactg
gtaagaaggacgcatgctccactatgttcatagcagccttatttataata
gccagaagctggaaagaacccagatgcccctcaacagaggaatggataca
gaaaatgtggcacatttacacaatggagtactactcagctattaaaaaga
atgaatttatgaaattcctaggcaaatggatggacctggagggcatcatc
ccgagtgaggtaacacaatcacaaaggaactcacacaatatgtactcact
gataagtggatattagtccaaaacttagatacccaagatatagatacaat
ttgctaaatgcatgaaactcagaagaatgaagaccaaagtgtggacactt
tgccccttcttagaattgggacaaacactcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_38446264_38447499
seq2: B6Ng01-214A05.b_47_1266

seq1  GAATTCAAAAGATGAGCTGTCTTCTAGAATATGGATTTTTACATTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGATGAGCTGTCTTCTAGAATATGGATTTTTACATTAAAAA  50

seq1  TATTTCCATATTTCCAGGTGTGTAAATTTAGTTCAACTGTGTTCTAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCATATTTCCAGGTGTGTAAATTTAGTTCAACTGTGTTCTAAAGC  100

seq1  AAATAGATAAATTTCAAGCCTTCAAAAATTGTTTCTGAAGTATACAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATAAATTTCAAGCCTTCAAAAATTGTTTCTGAAGTATACAAAAA  150

seq1  GGAAATAAGATGAATTTATGTCATTTGACATCATATATATTACAGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAGATGAATTTATGTCATTTGACATCATATATATTACAGACACA  200

seq1  ACACTAACAGGACAATGGAAAAATTAAATAGAAACATACCAGTAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACAGGACAATGGAAAAATTAAATAGAAACATACCAGTAAAAAAA  250

seq1  TAGGAAAACTTAGGATATACTTAACTATTAAGAGATCTAGTAACAGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAACTTAGGATATACTTAACTATTAAGAGATCTAGTAACAGTGAT  300

seq1  AGCAAAATGCACTCATAATAGACATTTTATTATTTACCATGATTTAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATGCACTCATAATAGACATTTTATTATTTACCATGATTTAGAAA  350

seq1  CATACCTAAAAATACCAAATTTGAATTCCATGTGGAAGAATGAAAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTAAAAATACCAAATTTGAATTCCATGTGGAAGAATGAAAGGAAG  400

seq1  AGTGATTTTAAAGGTAATTTCACATGTAGCTGCTATTTCAGTGAGTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTTAAAGGTAATTTCACATGTAGCTGCTATTTCAGTGAGTGTGG  450

seq1  GAACTTTATAAACATGAAGAAATAAATTTTAGAGTATGAATTCTTAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTATAAACATGAAGAAATAAATTTTAGAGTATGAATTCTTAATTT  500

seq1  TATACATGTCAAATGGCACCATAGATAAAATTAAAAGACAATAAGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGTCAAATGGCACCATAGATAAAATTAAAAGACAATAAGGAAGA  550

seq1  AAATGTTTAGAACATACCAAAAGACTTTATATATTAAACATAATATATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTAGAACATACCAAAAGACTTTATATATTAAACATAATATATAA  600

seq1  TATTCAACATATGGAAATTGGAAATAATTTCATAAGTAGAAGTATATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAACATATGGAAATTGGAAATAATTTCATAAGTAGAAGTATATAAA  650

seq1  CTGAACAACAAATTTAAAATCAAGATTAATCCTTAAAAATCATACCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAACAAATTTAAAATCAAGATTAATCCTTAAAAATCATACCATAA  700

seq1  TTATTGATATAATTATCCTGTGAAGTACTGAGAGTATAGTCTAACAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATATAATTATCCTGTGAAGTACTGAGAGTATAGTCTAACAAGGA  750

seq1  TTTTCACAACTAGTGGTATGAATAGAAACTGCACAATATTTCTGAAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAACTAGTGGTATGAATAGAAACTGCACAATATTTCTGAAGGCA  800

seq1  ACTTGTTATAAGTATTCTCCCTCACATACCTTAAATAAAAGCACAAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTATAAGTATTCTCCCTCACATACCTTAAATAAAAGCACAAAATA  850

seq1  TCTACATATCTGAGTTGGCAGTCCAACAAGAGTTATAATATAATATAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATATCTGAGTTGGCAGTCCAACAAGAGTTATAATATAATATAAAA  900

seq1  AAGAATACCTTATTTCTTTTTCATAATTTTTCATTAATTAATTAATTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACCTTATTTCTTTTTCATAATTTTTCATTAATTAATTAATTAAT  950

seq1  TTGCATCCTTATCACATCTACTCCTGCCTCTCCTTCCAGCCCCTACTTCT  1000
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  TTGCATCCTTATCACATCTACT-CTG-CTCTCCTTCCAGCCCCTACTTCT  998

seq1  CCCCTGCCCTTTCCTCATCCTCCAGTCCTCCCTTTATTCTCAGACAAGGG  1050
       ||||||||||  ||||||||||||||||||||||| |||||||  ||||
seq2  -CCCTGCCCTT--CTCATCCTCCAGTCCTCCCTTTA-TCTCAGAACAGGG  1044

seq1  GAGACCTCCCATGTATACCAACTTCTCCTATTGAAACTAGACAAGGCAGA  1100
      |||||||||||||||||||||||||| ||| ||||||||||| |||||||
seq2  GAGACCTCCCATGTATACCAACTTCT-CTA-TGAAACTAGAC-AGGCAGA  1091

seq1  CCACTTAGGAGAAAATAAGTTATTCTTTTAAAGATATTTAGT-AATACAA  1149
      |||||||||||||||| || ||||||||| |||||||||||| |||||||
seq2  CCACTTAGGAGAAAAT-AGGTATTCTTTT-AAGATATTTAGTAAATACAA  1139

seq1  ATAATCTTCAATACTAACTTATAATATATACTATACATTACCTTTTTACA  1199
      || ||| ||||| || |||||||||||   ||||||  || |  ||||||
seq2  AT-ATC-TCAAT-CT-ACTTATAATATTACCTATAC--TAACCGTTTACA  1183

seq1  CATTACCTTTTTAATACCCAAGGTAAC-TGTATAAAGT  1236
        | ||| |||||||||| |||||||| ||||||||||
seq2  -GTAACCGTTTTAATACCTAAGGTAACGTGTATAAAGT  1220


seq1: chrX_38649568_38650316
seq2: B6Ng01-214A05.g_67_815

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCAAATTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCAAATTTTAATGGGGTTATTTGATT  50

seq1  TCCTGGAGTCCATCTTCTTGATATATATATATATATATATATGTATACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGTCCATCTTCTTGATATATATATATATATATATATGTATACAT  100

seq1  ATATATGTATATGTATATTGGATATTAGTCCCCTATCTGATTTAGGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTATATGTATATTGGATATTAGTCCCCTATCTGATTTAGGATGT  150

seq1  GTAAATATCCTTTTCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATCCTTTTCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGT  200

seq1  GTCTTTTGCCTTACAGAAGCTTTGCAATTTTTTTTTTTTAGTGTGCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGCCTTACAGAAGCTTTGCAATTTTTTTTTTTTAGTGTGCAGCT  250

seq1  TTTTTTTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAA  300

seq1  GTCCCCCATACTCTCACCCCCCACTTCCCTACCCACCCATTCCTATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCATACTCTCACCCCCCACTTCCCTACCCACCCATTCCTATTTTT  350

seq1  TTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGTGTGTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGTGTGTCCAA  400

seq1  TGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTTTGATACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTTTGATACATAT  450

seq1  GCAGCTAGAGTCAAGAGCTCCCAGGTACTGGTAAGCTTGTACAATCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAGAGTCAAGAGCTCCCAGGTACTGGTAAGCTTGTACAATCACTC  500

seq1  TGGAAATCAGTCTGGTGGTTCCTTAGAAAATTGGACATAGTACTACCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCAGTCTGGTGGTTCCTTAGAAAATTGGACATAGTACTACCGGA  550

seq1  GGATCCAGCAATACCTCTCGTGGGCATATATCCAGAAAATGTCCCAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAGCAATACCTCTCGTGGGCATATATCCAGAAAATGTCCCAACTG  600

seq1  GTAAGAAGGACGCATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGGACGCATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA  650

seq1  GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA  700

seq1  GAAAATGTGGCACATTTACACAATGGAGTACTACTCAGCTATTAAAAAG  749
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGGCACATTTACACAATGGAGTACTACTCAGCTATTAAAAAG  749


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