BAC Information

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BAC

Clone NameB6Ng01-214P05
Chromosome6 (Build37)X (Build37)
Map Location 48,759,406 - 48,760,51175,598,902 - 75,598,938
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3
Downstream geneTmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214P05.bB6Ng01-214P05.g
ACCGA032059GA032060
length1,106594
definitionB6Ng01-214P05.b B6Ng01-214P05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,759,406 - 48,760,511)(75,598,902 - 75,598,938)
sequence
gaattctgagaacgtgtgagaaaactccaagaaaacaagccaagagtctt
gtgacctccgttccttcccaacacagatttgtccttgtgtgggttttctg
cctctcccaggtaaattaaatgcatttgcttcagattacccattatctta
cttttgttattcacagatgttaataatcacggcctgtccttgagtttgta
tacagcttgaagacatgtgtactttgctcttgtaaacttgcttaatcctt
agaatataaattaactgttgctctaaataaaattggctggggtgaggctt
tagtctgtctcgtttctagactccattctcccatgctgacactgccagct
agagtggtgacaaggaaatatgtccagatttggagattatatggctggag
actaaaagaactttatataaaataccaaattctagttggtgaattggttc
tcacaagcatacaaaatatcacatactaggggttcaacaaataagctagc
atatttcagaggctggaccttggcttctccttgccagagaacaagttaca
cagaggcaaagggctgacgctagagtaaattctgatattgggctggagta
tatacatcaacactttcccatgggaatttctttcttgtagagaaataaac
atagatatgctttggttgtcagcttgattggatcaagagacacttagaaa
actagttaagctctttctaggcatgtctgtgaaggtgttccagagggtga
ttggctggtagaccagcaagctgaaagcaagcagagccatgcagcaaggt
gagggcaggatggaatgaaaaagcagagacagaaagctggcatggaccca
catggacaggactgtcctctactgccgctgtgacccttgggtgtcagact
ccaggcccctttagcttttggctgtggccttgcaccagcatctccctgga
ggtctcatgctttcactggggcttgggggccgattgcttggcccagttgt
tctggctcatttatatttagtcttgtaggcagatgctgtgggatcattta
tctctgatcaagctgatagttcactccttggatatattatatctggtctc
tgttgt
gaattcttgctggcgagatactagctcgggataagtggtgctgaaaaccc
aggcgctgaaaaggggaccctccccccccccccccccccccccggttcat
ggggcggattcagaactacgggacactaaagctctgtaaggtacgttctg
tcttgaactttctccagcattagaggccttttaaggggggcagaagatcc
tggaggaagtccaagacagtctatcagaaacagatcggggagagagatta
ggagttaagaggaaacaaggtgcacctaagaagaaaataggcctttccac
ggaccttgagtccgaggaaaagagaattacgggaaagcatgcctcgggtg
agtttggagggaaggatagaaaagaagagaggaagaaagatcgagctggg
gaggcccctaggggagggagcctctacccgccgttagatgagttcaaggg
actagctcttagtagctcagaatcagatgaggaccttagcccctctgaga
aaacagacttggaggaggaagtggctcactatgagagagaaaataatttt
tagaaaagcagttatcccctgtttgggatctttcagcacaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48759406_48760511
seq2: B6Ng01-214P05.b_49_1154

seq1  GAATTCTGAGAACGTGTGAGAAAACTCCAAGAAAACAAGCCAAGAGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGAACGTGTGAGAAAACTCCAAGAAAACAAGCCAAGAGTCTT  50

seq1  GTGACCTCCGTTCCTTCCCAACACAGATTTGTCCTTGTGTGGGTTTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTCCGTTCCTTCCCAACACAGATTTGTCCTTGTGTGGGTTTTCTG  100

seq1  CCTCTCCCAGGTAAATTAAATGCATTTGCTTCAGATTACCCATTATCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCAGGTAAATTAAATGCATTTGCTTCAGATTACCCATTATCTTA  150

seq1  CTTTTGTTATTCACAGATGTTAATAATCACGGCCTGTCCTTGAGTTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTATTCACAGATGTTAATAATCACGGCCTGTCCTTGAGTTTGTA  200

seq1  TACAGCTTGAAGACATGTGTACTTTGCTCTTGTAAACTTGCTTAATCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTGAAGACATGTGTACTTTGCTCTTGTAAACTTGCTTAATCCTT  250

seq1  AGAATATAAATTAACTGTTGCTCTAAATAAAATTGGCTGGGGTGAGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAAATTAACTGTTGCTCTAAATAAAATTGGCTGGGGTGAGGCTT  300

seq1  TAGTCTGTCTCGTTTCTAGACTCCATTCTCCCATGCTGACACTGCCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGTCTCGTTTCTAGACTCCATTCTCCCATGCTGACACTGCCAGCT  350

seq1  AGAGTGGTGACAAGGAAATATGTCCAGATTTGGAGATTATATGGCTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGTGACAAGGAAATATGTCCAGATTTGGAGATTATATGGCTGGAG  400

seq1  ACTAAAAGAACTTTATATAAAATACCAAATTCTAGTTGGTGAATTGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGAACTTTATATAAAATACCAAATTCTAGTTGGTGAATTGGTTC  450

seq1  TCACAAGCATACAAAATATCACATACTAGGGGTTCAACAAATAAGCTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGCATACAAAATATCACATACTAGGGGTTCAACAAATAAGCTAGC  500

seq1  ATATTTCAGAGGCTGGACCTTGGCTTCTCCTTGCCAGAGAACAAGTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAGAGGCTGGACCTTGGCTTCTCCTTGCCAGAGAACAAGTTACA  550

seq1  CAGAGGCAAAGGGCTGACGCTAGAGTAAATTCTGATATTGGGCTGGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAAAGGGCTGACGCTAGAGTAAATTCTGATATTGGGCTGGAGTA  600

seq1  TATACATCAACACTTTCCCATGGGAATTTCTTTCTTGTAGAGAAATAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATCAACACTTTCCCATGGGAATTTCTTTCTTGTAGAGAAATAAAC  650

seq1  ATAGATATGCTTTGGTTGTCAGCTTGATTGGATCAAGAGACACTTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATGCTTTGGTTGTCAGCTTGATTGGATCAAGAGACACTTAGAAA  700

seq1  ACTAGTTAAGCTCTTTCTAGGCATGTCTGTGAAGGTGTTCCAGAGGGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTAAGCTCTTTCTAGGCATGTCTGTGAAGGTGTTCCAGAGGGTGA  750

seq1  TTGGCTGGTAGACCAGCAAGCTGAAAGCAAGCAGAGCCATGCAGCAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGTAGACCAGCAAGCTGAAAGCAAGCAGAGCCATGCAGCAAGGT  800

seq1  GAGGGCAGGATGGAATGAAAAAGCAGAGACAGAAAGCTGGCATGGACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGGATGGAATGAAAAAGCAGAGACAGAAAGCTGGCATGGACCCA  850

seq1  CATGGACAGGACTGTCCTCTACTGCCGCTGTGACCCTTGGGTGTCAGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACAGGACTGTCCTCTACTGCCGCTGTGACCCTTGGGTGTCAGACT  900

seq1  CCAGGCCCC-TTAGCTTTTGGCTGTGGCCTTGCACCAGCATCTCCCTGGA  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCCCTTTAGCTTTTGGCTGTGGCCTTGCACCAGCATCTCCCTGGA  950

seq1  GGTCTCATGCTTTCACCTGGGGCT--GGGGCCGAATGCTTGGCCCCAGTT  997
      ||||||||||||||| ||||||||  |||||||| ||||||| |||||||
seq2  GGTCTCATGCTTTCA-CTGGGGCTTGGGGGCCGATTGCTTGG-CCCAGTT  998

seq1  GTTCTGGCTTCATTTATATTTAG-CCTGTAGGCAGATGCTGTGGGATCAT  1046
      |||||||| |||||||||||||| | ||||||||||||||||||||||||
seq2  GTTCTGGC-TCATTTATATTTAGTCTTGTAGGCAGATGCTGTGGGATCAT  1047

seq1  TTATCTTCTGATCAAGCTGATAAGTTCACTCTTTTGAT-TATATTATCTG  1095
      ||||| ||||||||||||||| ||||||||| || ||| |||  ||||||
seq2  TTATC-TCTGATCAAGCTGAT-AGTTCACTCCTTGGATATATTATATCTG  1095

seq1  GGTTCTGTTGT  1106
      |  ||||||||
seq2  GTCTCTGTTGT  1106

seq1: chrX_75598902_75598938
seq2: B6Ng01-214P05.g_626_662 (reverse)

seq1  TTTTTTTGCTAAAAGATCCCAAACAGGGGATAACTGC  37
      ||||| |||| ||||||||||||||||||||||||||
seq2  TTTTTGTGCTGAAAGATCCCAAACAGGGGATAACTGC  37