BAC Information

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BAC

Clone NameB6Ng01-216H20
ChromosomeX (Build37)
Map Location 8,121,870 - 8,122,789
singlet/doubletsinglet
Overlap geneSsxb6
Upstream genePpp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2, LOC546263
Downstream geneSsxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216H20.bB6Ng01-216H20.g
ACCGA033166GA033167
length1,1391,003
definitionB6Ng01-216H20.b B6Ng01-216H20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaaat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcaatctggtggttcctca
gaaaattggacatagtactaccggaggatccagtaatacctctcctgggc
atatatccagatgatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggtatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaaacacatgaaactcaa
gaagaatgaagactgaagtgtggacactatgcccctccttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagattttatctta
aggacccagatgtagctgtctcttgtgagactttgccgggcctagcaaac
acagaagtggatgcttaccagtcagcttaatgggatggatcacaaggtct
ccctattggagggagctagagaaatttacctcaaaggagctaaagggaat
ctgcaacccctataggtgggaacaacatttatgaactaaccattaccccg
tagcctcttgaactctatgctgcatatgaatcaaagaatgggctagatca
gccatcctcgtgaaaagagatggctcctattttgtaact
gaattctctctacactacactggaccctgcagctgtcgaaatccccattc
catatcaggtgcctcctgggggtcctctgtcttggggctgtggggcagac
agttctcaggtatagatatgtcctgaactcgatcatagtggaaggggtgt
accatgaaagccctgtcagttgtagccataacagagcatgggcccttcac
agagcataggccagctggagatccctatgtggaaagtgagtgtcaggatg
aaagaatgtgcaagctctgcgagagaatactgacaggagcttcacctggg
cttcaaaaactaaggaagactgtactacacttcagtgggttgggctttag
gttagctagcaagctagtggaactgctctttgggtcaataatctagtgca
gttgaggcaatcctcattatcagtactctaagtaacaaaatgctctaatt
ggagaaactcaggtcctgtactgtaagtatgaccaagaacctgtagttat
acaggacccctttgaaacccggtcctatgattttgctaaatgcgtgtatt
ataaactgttttataaactcatatgtctctacccatagttgaaaggagct
ctgagacagcatcagagaagttgttttgtacagttattggtggctactgc
agaaactcccatctggttagactgcacaaagtaagtgtctatggattgcc
cacaaaacatcaaacatgtcacacacactctccccccaagctcaagttca
ataacagaagagggggatcgagagatttgaagaggcagaagacattcgca
ccagagcaatgtagtgtttgagggacatgacatggttattagaactcatg
aacacacacagtaaatgtcttttgcccctttatgagacctgcacaagatc
aagcttgccaatacttctggcatgggacttgatttggggaacttcattgt
ggcttcttaacagaagtggcctttttgtgggagaaatgtcatttttaatt
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_8121870_8122789
seq2: B6Ng01-216H20.g_65_989

seq1  GAATTCTCTCTACACTACACTGGACCCTGCAGCTGTCGAAATCCCCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTACACTACACTGGACCCTGCAGCTGTCGAAATCCCCATTC  50

seq1  CATATCAGGTGCCTCCTGGGGGTCCTCTGTCTTGGGGCTGTGGGGCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGGTGCCTCCTGGGGGTCCTCTGTCTTGGGGCTGTGGGGCAGAC  100

seq1  AGTTCTCAGGTATAGATATGTCCTGAACTCGATCATAGTGGAAGGGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGGTATAGATATGTCCTGAACTCGATCATAGTGGAAGGGGTGT  150

seq1  ACCATGAAAGCCCTGTCAGTTGTAGCCATAACAGAGCATGGGCCCTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAAAGCCCTGTCAGTTGTAGCCATAACAGAGCATGGGCCCTTCAC  200

seq1  AGAGCATAGGCCAGCTGGAGATCCCTATGTGGAAAGTGAGTGTCAGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAGGCCAGCTGGAGATCCCTATGTGGAAAGTGAGTGTCAGGATG  250

seq1  AAAGAATGTGCAAGCTCTGCGAGAGAATACTGACAGGAGCTTCACCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGTGCAAGCTCTGCGAGAGAATACTGACAGGAGCTTCACCTGGG  300

seq1  CTTCAAAAACTAAGGAAGACTGTACTACACTTCAGTGGGTTGGGCTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAAACTAAGGAAGACTGTACTACACTTCAGTGGGTTGGGCTTTAG  350

seq1  GTTAGCTAGCAAGCTAGTGGAACTGCTCTTTGGGTCAATAATCTAGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTAGCAAGCTAGTGGAACTGCTCTTTGGGTCAATAATCTAGTGCA  400

seq1  GTTGAGGCAATCCTCATTATCAGTACTCTAAGTAACAAAATGCTCTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGCAATCCTCATTATCAGTACTCTAAGTAACAAAATGCTCTAATT  450

seq1  GGAGAAACTCAGGTCCTGTACTGTAAGTATGACCAAGAACCTGTAGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACTCAGGTCCTGTACTGTAAGTATGACCAAGAACCTGTAGTTAT  500

seq1  ACAGGACCCCTTTGAAACCCGGTCCTATGATTTTGCTAAATGCGTGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCCCTTTGAAACCCGGTCCTATGATTTTGCTAAATGCGTGTATT  550

seq1  ATAAACTGTTTTATAAACTCATATGTCTCTACCCATAGTTGAAAGGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTGTTTTATAAACTCATATGTCTCTACCCATAGTTGAAAGGAGCT  600

seq1  CTGAGACAGCATCAGAGAAGTTGTTTTGTACAGTTATTGGTGGCTACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAGCATCAGAGAAGTTGTTTTGTACAGTTATTGGTGGCTACTGC  650

seq1  AGAAACTCCCATCTGGTTAGACTGCACAAAGTAAGTGTCTATGGATTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCCCATCTGGTTAGACTGCACAAAGTAAGTGTCTATGGATTGCC  700

seq1  CACAAAACATCAAACATGTCACACACACTCTCCCCCCAAGCTCAAGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACATCAAACATGTCACACACACTCTCCCCCCAAGCTCAAGTTCA  750

seq1  ATAACAGAAGAGGGGGATCGAGAGATTTGAAGAGGCAGAAGACATTCGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAAGAGGGGGATCGAGAGATTTGAAGAGGCAGAAGACATTCGCA  800

seq1  CCAGAGCAATGTAGTGTTTGAGGGACATGACATGGTTATTAG-ACTCATG  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCAGAGCAATGTAGTGTTTGAGGGACATGACATGGTTATTAGAACTCATG  850

seq1  AACACACACAGTAAATGTC-TTTGCCCC--TATGAGACCTGCACAAGATC  896
      ||||||||||||||||||| ||||||||  ||||||||||||||||||||
seq2  AACACACACAGTAAATGTCTTTTGCCCCTTTATGAGACCTGCACAAGATC  900

seq1  AAGCCTGCCAATAC-TCTGGCATGG  920
      |||| ||||||||| ||||||||||
seq2  AAGCTTGCCAATACTTCTGGCATGG  925