BAC Information

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BAC

Clone NameB6Ng01-218A10
ChromosomeX (Build37)
Map Location 35,628,903 - 35,774,754
singlet/doubletdoublet
Overlap geneEG665331, Atp1b4, Gm40, EG227112, Lamp2
Upstream geneUpf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik
Downstream geneLOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218A10.bB6Ng01-218A10.g
ACCGA034265GA034266
length1,102563
definitionB6Ng01-218A10.b B6Ng01-218A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,773,664 - 35,774,754)(35,628,903 - 35,629,447)
sequence
gaattccaaatactatcaactacaaatgaatcatatgattttggttttcc
tgactaaggagtttaaaattactatggcaaaaggcatgtacaaaattatc
tggttctgtttcactggtctggaatttctgaatgagaacgtccagtgtag
gaaaaagccggtttcttctgcctgcatgaaattgagtttggccatcctga
tttccagtggatttgtacttgctccttttgcattgcttgtgacttttgtt
tgcaggttgacttagctacttcggccttgttccatatttgacctatgaaa
aaggtatcagtagatttgaacagagcccagaggtaccatgctcttgccag
taaaattcttttcccatgtttttgaatacatttgtatttaatgtggctga
aatgacaaaaacaaaggtcctaaattttagaatagatgttatctttttat
ttaatctttaaaaaaaaaaactggatgtttcaatcttttaaattgcaaga
cacaaggcaattccaactgggcatttcaatctggttttaggtgctttaga
gataattgctaggcagtgccaaatgaaggcattagtgctttgtacccaga
aattggcctctacatgcagcactaagattaatgcagatttctcttgaacc
ttccagtcttccttgttggtggtaatgtgctttgttctttcctttttttc
ctcaagaagaaatgttagtatgtcttagaacctaggtaacgaagtgcact
tatgctcataaaattgcttgcacctaatccaaaagtcatggtcttgcctt
agtccattaacatggtcttcatttccagtttgcattgactgctacagcac
ttactaatttggcttttatgtttaaatggttctgtgataatcaaaactta
aatagtttactgttcgtttcattgtggtacttttgtattcagttctgtac
tcagagatggcaccaattgttcatttactatgcacccacctacctgctta
tattagagaactaattactctttcagcccgatacttaaacacattcatgt
aattccttgcaacttcttagacatctttccatacatgtttatggaatgtg
ga
gaattcatgattattgatatttgtgactgctacaactaataaggaccaat
agcaagaaaggaagaaaggaagaaaggaagaaaagaagaaagaaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag
aaagagaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg
aaggagcccttatagtaacaagcacatctcatgcctgcaatttggtatct
agataatcatccttgaataaaggaacagaaaacttagagaaatgtctgga
tccaggatagaacaaaagcaaatgccttgaactgctggaaaataatgaaa
tatggaaaacatgatagataaatgtcaaagggacacagaaactgacctga
aataataccaactggccaaatatgtgacaaattcatgacagcatagagaa
tagtaataaattataatacatatgtacaaatgttacaatgcatactgaat
aacactttcatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_35773664_35774754
seq2: B6Ng01-218A10.b_48_1149 (reverse)

seq1  TACACA-TCCAT--ACATGTATGG-AAGATGTCCTAGAAGCTGCAAGGAA  46
      | |||| |||||  |||||||||| ||||||||  ||||| |||||||||
seq2  TCCACATTCCATAAACATGTATGGAAAGATGTCTAAGAAGTTGCAAGGAA  50

seq1  -TACATG-ATGTG-TTAAGTATCGGGCTGAAAGAGTTATTAGTTCTCTTA  93
       |||||| ||||| |||||||||||||||||||||| ||||||||||| |
seq2  TTACATGAATGTGTTTAAGTATCGGGCTGAAAGAGTAATTAGTTCTCTAA  100

seq1  TATAAGCA-GTAGGT-GGTGCATAGTAAATGAACAATTGGTGCCATCTCT  141
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  TATAAGCAGGTAGGTGGGTGCATAGTAAATGAACAATTGGTGCCATCTCT  150

seq1  GAGTACAGAACTGAATACAAAAGTACCACAATG-AACGAACAGT-AACTA  189
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  GAGTACAGAACTGAATACAAAAGTACCACAATGAAACGAACAGTAAACTA  200

seq1  TTTAAGTTTTGATTATCACAGAACCATTTAAACATAAAAGCCAAATTAGT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTTTGATTATCACAGAACCATTTAAACATAAAAGCCAAATTAGT  250

seq1  AAGTGCTGTAGCAGTCAATGCAAACTGGAAATGAAGACCATGTTAATGGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGTAGCAGTCAATGCAAACTGGAAATGAAGACCATGTTAATGGA  300

seq1  CTAAGGCAAGACCATGACTTTTGGATTAGGTGCAAGCAATTTTATGAGCA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCAAGACCATGACTTTTGGATTAGGTGCAAGCAATTTTATGAGCA  350

seq1  TAAGTGCACTTCGTTACCTAGGTTCTAAGACATACTAACATTTCTTCTTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCACTTCGTTACCTAGGTTCTAAGACATACTAACATTTCTTCTTG  400

seq1  AGGAAAAAAAGGAAAGAACAAAGCACATTACCACCAACAAGGAAGACTGG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAGGAAAGAACAAAGCACATTACCACCAACAAGGAAGACTGG  450

seq1  AAGGTTCAAGAGAAATCTGCATTAATCTTAGTGCTGCATGTAGAGGCCAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCAAGAGAAATCTGCATTAATCTTAGTGCTGCATGTAGAGGCCAA  500

seq1  TTTCTGGGTACAAAGCACTAATGCCTTCATTTGGCACTGCCTAGCAATTA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGTACAAAGCACTAATGCCTTCATTTGGCACTGCCTAGCAATTA  550

seq1  TCTCTAAAGCACCTAAAACCAGATTGAAATGCCCAGTTGGAATTGCCTTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAAGCACCTAAAACCAGATTGAAATGCCCAGTTGGAATTGCCTTG  600

seq1  TGTCTTGCAATTTAAAAGATTGAAACATCCAGTTTTTTTTTTTAAAGATT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCAATTTAAAAGATTGAAACATCCAGTTTTTTTTTTTAAAGATT  650

seq1  AAATAAAAAGATAACATCTATTCTAAAATTTAGGACCTTTGTTTTTGTCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAGATAACATCTATTCTAAAATTTAGGACCTTTGTTTTTGTCA  700

seq1  TTTCAGCCACATTAAATACAAATGTATTCAAAAACATGGGAAAAGAATTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCCACATTAAATACAAATGTATTCAAAAACATGGGAAAAGAATTT  750

seq1  TACTGGCAAGAGCATGGTACCTCTGGGCTCTGTTCAAATCTACTGATACC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCAAGAGCATGGTACCTCTGGGCTCTGTTCAAATCTACTGATACC  800

seq1  TTTTTCATAGGTCAAATATGGAACAAGGCCGAAGTAGCTAAGTCAACCTG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATAGGTCAAATATGGAACAAGGCCGAAGTAGCTAAGTCAACCTG  850

seq1  CAAACAAAAGTCACAAGCAATGCAAAAGGAGCAAGTACAAATCCACTGGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAGTCACAAGCAATGCAAAAGGAGCAAGTACAAATCCACTGGA  900

seq1  AATCAGGATGGCCAAACTCAATTTCATGCAGGCAGAAGAAACCGGCTTTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGATGGCCAAACTCAATTTCATGCAGGCAGAAGAAACCGGCTTTT  950

seq1  TCCTACACTGGACGTTCTCATTCAGAAATTCCAGACCAGTGAAACAGAAC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACACTGGACGTTCTCATTCAGAAATTCCAGACCAGTGAAACAGAAC  1000

seq1  CAGATAATTTTGTACATGCCTTTTGCCATAGTAATTTTAAACTCCTTAGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAATTTTGTACATGCCTTTTGCCATAGTAATTTTAAACTCCTTAGT  1050

seq1  CAGGAAAACCAAAATCATATGATTCATTTGTAGTTGATAGTATTTGGAAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAACCAAAATCATATGATTCATTTGTAGTTGATAGTATTTGGAAT  1100

seq1  TC  1091
      ||
seq2  TC  1102

seq1: chrX_35628903_35629447
seq2: B6Ng01-218A10.g_64_612

seq1  GAATTCATGATTATTGATATTTGTGACTGCTACAACTAATAAGGACCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATTATTGATATTTGTGACTGCTACAACTAATAAGGACCAAT  50

seq1  AGCAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAAG--------AAGAAAG  92
      |||||||||||||||||||||||||||||||||||        |||||||
seq2  AGCAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAAGAAGAAAGAAAGAAAG  100

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGA  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGA  150

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG  200

seq1  AAAGAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  250

seq1  AAGGAGCCCTTATAGTAACAAGCACATCTCATGCCTGCAATTTGGTATCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCCTTATAGTAACAAGCACATCTCATGCCTGCAATTTGGTATCT  300

seq1  AGATAATCATCCTTGAATAAAGGAACAGAAAACTTAGAGAAATGTCTGGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATCATCCTTGAATAAAGGAACAGAAAACTTAGAGAAATGTCTGGA  350

seq1  TCCAGGATAGAACAAAAGCAAATGCCTTGAACTGCTGGAAAATAATGAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATAGAACAAAAGCAAATGCCTTGAACTGCTGGAAAATAATGAAA  400

seq1  TATGGAAAACATGATAGATAAATGTCAAAGGGACACAGAAACTGACCTGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAAACATGATAGATAAATGTCAAAGGGACACAGAAACTGACCTGA  450

seq1  AATAATACCAACTGGCCAAATATGTGACAAATTCATGAACAGCATAGAGA  492
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATAATACCAACTGGCCAAATATGTGACAAATTCATG-ACAGCATAGAGA  499

seq1  ATAGTAATAAATTATAATACATATGTAACAAATGTTTACAAATGCATACT  542
      |||||||||||||||||||||||||| ||||||| |||| ||||||||||
seq2  ATAGTAATAAATTATAATACATATGT-ACAAATG-TTAC-AATGCATACT  546

seq1  GAA  545
      |||
seq2  GAA  549