BAC Information

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BAC

Clone NameB6Ng01-220M13
ChromosomeX (Build37)
Map Location 164,425,158 - 164,538,862
singlet/doubletdoublet
Overlap geneFrmpd4
Upstream geneLOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566, Msl31, Arhgap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220M13.bB6Ng01-220M13.g
ACCGA036256GA036257
length683999
definitionB6Ng01-220M13.b B6Ng01-220M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,538,180 - 164,538,862)(164,425,158 - 164,426,154)
sequence
gaattctgataagcatcttatataaagtagctgagctgtttgactttcca
aaaagtccaatcaggtagtgtctatcattatttctcttaggacactgagg
gtgagagagaatcaatcacttgaaagaagtggagcctttccttgtgacct
ctgtggatgtgcaggaaataatgctactcaggggtgctgtcaatcatttg
cctctctgaattacatggtctgctgtttataatattgttatgtctcttag
aagaaagtgccaagcatagtatccagaaccttatgtattcttgtaaagtc
ctgtacccctgagccacacccctagccatctgtctctttttgtacaacga
agcaaagatcctaggcctggtacatgctaagtctatagtctaaccccgag
atacattcttaactcttctcttttttgtttcaaaatagcattttttaaaa
ccactacagcaactgcaattccaaaagccccctagataaaagtcttatta
attattcccatctcttgtttgaacccatactgaatttgtgtacattttgt
cttagaatgaaatgaattatgatttgcttgtaacagtggttatcactgga
tatcacagattgtaaaaaaacaataaagaagattagggggaagaggagga
gcaggaggaggagaagaaggaggatgaggagga

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggcaggtggatttctagagagcatgttc
cagacagcctggcctcatcagtgagcttcaggctcagtaagctagtgtat
cttacaaagtaagaggaagcctttctttctgcctgttgctctagctgaag
aagcattactgaaggcttccaactctccgtcttctttcaagggagtgggt
ggagctataaatgcaaggccacataagttagatggaagagttgtggatcc
caaaaaagctgtgtcaagagaaaactctcaaacatcacatgcctacttaa
ctatgacaaagatctttgttgatggttctaaaacactaacattccaggtc
acttgcaaggttattttgaacagcatggggaaactgaagtcaatgaagtc
atgactgacagaggcagtggacaaggggggggttctttgttttgttacca
ttgaagatccatgattacaaggataaggctgacattcagcaagacctttc
tatgaatggctacaactgtggagtgagaaaagccctgtcaaagcaagaga
tagctagtgcttcatccagtccaggaggccaaagcatttctataaattct
ggaggtggttgtggggacaatgataatttgggtggaggaagaaacttctg
tggttgtggtggctttggttgcagccagggaatagctaaaatggatttgt
taatgactgaagcaatttcagatgtaggagaagctacaatgcttttggca
atgaaaagaaccaatctttcaacttttggagcaatgaagggagaaaaact
tgagagggaagcttctagccattacagagtgtagaccaatgccttttcta
accagtgaagctaggtagcctgtgggtggatccagcagcagcagaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_164538180_164538862
seq2: B6Ng01-220M13.b_44_726 (reverse)

seq1  TCCTCCTCATCCTCCTTCTTCTCCTCCTCCTGCTCCTCCTCTTCCCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCATCCTCCTTCTTCTCCTCCTCCTGCTCCTCCTCTTCCCCCTA  50

seq1  ATCTTCTTTATTGTTTTTTTACAATCTGTGATATCCAGTGATAACCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTTATTGTTTTTTTACAATCTGTGATATCCAGTGATAACCACTG  100

seq1  TTACAAGCAAATCATAATTCATTTCATTCTAAGACAAAATGTACACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGCAAATCATAATTCATTTCATTCTAAGACAAAATGTACACAAAT  150

seq1  TCAGTATGGGTTCAAACAAGAGATGGGAATAATTAATAAGACTTTTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGGGTTCAAACAAGAGATGGGAATAATTAATAAGACTTTTATCT  200

seq1  AGGGGGCTTTTGGAATTGCAGTTGCTGTAGTGGTTTTAAAAAATGCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCTTTTGGAATTGCAGTTGCTGTAGTGGTTTTAAAAAATGCTATT  250

seq1  TTGAAACAAAAAAGAGAAGAGTTAAGAATGTATCTCGGGGTTAGACTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACAAAAAAGAGAAGAGTTAAGAATGTATCTCGGGGTTAGACTATA  300

seq1  GACTTAGCATGTACCAGGCCTAGGATCTTTGCTTCGTTGTACAAAAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGCATGTACCAGGCCTAGGATCTTTGCTTCGTTGTACAAAAAGAG  350

seq1  ACAGATGGCTAGGGGTGTGGCTCAGGGGTACAGGACTTTACAAGAATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGCTAGGGGTGTGGCTCAGGGGTACAGGACTTTACAAGAATACA  400

seq1  TAAGGTTCTGGATACTATGCTTGGCACTTTCTTCTAAGAGACATAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTCTGGATACTATGCTTGGCACTTTCTTCTAAGAGACATAACAAT  450

seq1  ATTATAAACAGCAGACCATGTAATTCAGAGAGGCAAATGATTGACAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAACAGCAGACCATGTAATTCAGAGAGGCAAATGATTGACAGCAC  500

seq1  CCCTGAGTAGCATTATTTCCTGCACATCCACAGAGGTCACAAGGAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTAGCATTATTTCCTGCACATCCACAGAGGTCACAAGGAAAGGC  550

seq1  TCCACTTCTTTCAAGTGATTGATTCTCTCTCACCCTCAGTGTCCTAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCTTTCAAGTGATTGATTCTCTCTCACCCTCAGTGTCCTAAGAG  600

seq1  AAATAATGATAGACACTACCTGATTGGACTTTTTGGAAAGTCAAACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGATAGACACTACCTGATTGGACTTTTTGGAAAGTCAAACAGCT  650

seq1  CAGCTACTTTATATAAGATGCTTATCAGAATTC  683
      |||||||||||||||||||||||||||||||||
seq2  CAGCTACTTTATATAAGATGCTTATCAGAATTC  683


seq1: chrX_164425158_164426154
seq2: B6Ng01-220M13.g_65_1063

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCAGGTGGATTTCTAGAGAGCATGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCAGGTGGATTTCTAGAGAGCATGTTC  150

seq1  CAGACAGCCTGGCCTCATCAGTGAGCTTCAGGCTCAGTAAGCTAGTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCCTGGCCTCATCAGTGAGCTTCAGGCTCAGTAAGCTAGTGTAT  200

seq1  CTTACAAAGTAAGAGGAAGCCTTTCTTTCTGCCTGTTGCTCTAGCTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAAGTAAGAGGAAGCCTTTCTTTCTGCCTGTTGCTCTAGCTGAAG  250

seq1  AAGCATTACTGAAGGCTTCCAACTCTCCGTCTTCTTTCAAGGGAGTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTACTGAAGGCTTCCAACTCTCCGTCTTCTTTCAAGGGAGTGGGT  300

seq1  GGAGCTATAAATGCAAGGCCACATAAGTTAGATGGAAGAGTTGTGGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATAAATGCAAGGCCACATAAGTTAGATGGAAGAGTTGTGGATCC  350

seq1  CAAAAAAGCTGTGTCAAGAGAAAACTCTCAAACATCACATGCCTACTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGCTGTGTCAAGAGAAAACTCTCAAACATCACATGCCTACTTAA  400

seq1  CTATGACAAAGATCTTTGTTGATGGTTCTAAAACACTAACATTCCAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACAAAGATCTTTGTTGATGGTTCTAAAACACTAACATTCCAGGTC  450

seq1  ACTTGCAAGGTTATTTTGAACAGCATGGGGAAACTGAAGTCAATGAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAAGGTTATTTTGAACAGCATGGGGAAACTGAAGTCAATGAAGTC  500

seq1  ATGACTGACAGAGGCAGTGGACAAGGGGGGGGTTCTTTGTTTTGTTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGACAGAGGCAGTGGACAAGGGGGGGGTTCTTTGTTTTGTTACCA  550

seq1  TTGAAGATCCATGATTACAAGGATAAGGCTGACATTCAGCAAGACCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATCCATGATTACAAGGATAAGGCTGACATTCAGCAAGACCTTTC  600

seq1  TATGAATGGCTACAACTGTGGAGTGAGAAAAGCCCTGTCAAAGCAAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGGCTACAACTGTGGAGTGAGAAAAGCCCTGTCAAAGCAAGAGA  650

seq1  TAGCTAGTGCTTCATCCAGTCCAGGAGGCCAAAGCATTTCTATAAATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGTGCTTCATCCAGTCCAGGAGGCCAAAGCATTTCTATAAATTCT  700

seq1  GGAGGTGGTTGTGGGGACAATGATAATTTGGGTGGAGGAAGAAACTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGTTGTGGGGACAATGATAATTTGGGTGGAGGAAGAAACTTCTG  750

seq1  TGGTTGTGGTGGCTTTGGTTGCAGCCAGGGAATAGCTAAAATGGATTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGGTGGCTTTGGTTGCAGCCAGGGAATAGCTAAAATGGATTTGT  800

seq1  TAATGACTGAAGCAATTTCAGATGTAGGAGAAGCTACAATGCTTTTGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTGAAGCAATTTCAGATGTAGGAGAAGCTACAATGCTTTTGGCA  850

seq1  ATGAAAAGAACCAATC-TTCAAACTTTGGAGCAATGAAGGGAGAAAACTT  899
      |||||||||||||||| |||||  |||||||||||||||||||||||  |
seq2  ATGAAAAGAACCAATCTTTCAACTTTTGGAGCAATGAAGGGAGAAAAACT  900

seq1  TGGAGAGGGAAGC-TCTAGCCATTACAGAGGTGTAGACCAATG-CTTTTC  947
      | ||||||||||| ||||||||||||||| ||||||||||||| ||||||
seq2  T-GAGAGGGAAGCTTCTAGCCATTACAGA-GTGTAGACCAATGCCTTTTC  948

seq1  TAAACAGTGAAGCCAAGGTAG-CTGT-GGTGGTTCCAGCAGCAGCAGAAG  995
      ||| |||||||| | |||||| |||| ||||| |||||||||||||||||
seq2  TAACCAGTGAAG-CTAGGTAGCCTGTGGGTGGATCCAGCAGCAGCAGAAG  997

seq1  CT  997
      ||
seq2  CT  999


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