BAC Information

Click to search

BAC

Clone NameB6Ng01-222E23
ChromosomeX (Build37)
Map Location 22,767,244 - 22,900,443
singlet/doubletdoublet
Overlap geneKlhl13
Upstream geneLOC100043182, LOC100043956, EG436197, Ppia-psx_207.1, 1700023I07Rik
Downstream geneEG635719, Wdr44, EG236749, EG214450, EG245376, LOC546271, LOC100043957, LOC100043206, LOC669000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222E23.bB6Ng01-222E23.g
ACCGA037364GA037365
length1,0391,136
definitionB6Ng01-222E23.b B6Ng01-222E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,767,244 - 22,768,196)(22,899,301 - 22,900,443)
sequence
gaattcatatgttctgagtgcctcgggaagaaatgggtcgtgaatggtat
aatgagatcatgttcgcatcacttttgggtcttatctaggctcagagctc
tccagaggaggccagaccattgtgtctttggagaaagcaaaagtctgtgg
gagtgatttagaaggctaacctaaagaaaatgtaagggtaggctcagaat
aaggtagttgagtaggagcatcttctctgagaattttcaaaaaaagcaaa
agtgaggagacagaacattctagaagaagcaaaaaagtagaagacagggc
caaaatatgattcattaaaggagaattaagttaaactttctctcctgggt
atttctctgaaggtggatgaatgaaaagcagaagtttctggaaatggtcc
attttagagaaggtagattccaggaggtgttattgctgcataaagaaaga
atgatcacccttccagtcagcgccagctctgggccaccttgggtgcaaac
tcggcagacagtcccctggtacccagaggtctctctatgacgcaggcgcc
ctagtgtgcccaggatcttagaatcactggtaagtggaatgcaacatctg
ttccaaaccaattgtgatgggcctgtgacagcaggagcaaggacacagga
gggctgcctgaccagtggctcaggttccttctggttggtgctggtatacc
ttggtttcaaacacagcagacagccccacggtcatcagaggagacaccaa
ttccaggtgctgtaaaatggccaggatcttaggattccaggataccagga
taccaggagcttggtcacaccaagatctcaggtctcagaggaagcttgac
tgccaagaattctgacacacccagaatcacaggttcacagagaaaggtgg
actctgaggagtcctgaatcaaatgggattgcgggaaggacaggctccaa
tcaattatattgagggcagcaagcacttgagataatcagatggcaggggc
aaacatataacagaagcactcaggttacttggcatcatc

gaattctcacacagtagatagagcctggggactcttatggaagaacagga
ggaaggattgtggcctataagggaataggaactccacaggaagaccagca
gagtcaagtatcctggacccttggcaagcaccttcatccattgagtcatc
tctctggttctaaaccattttctttattgcatctctgttttgtgtcagac
cttagaaagacattgtatccactaaattgtattcttgattttctactttt
ataattctacttacttgtactcacatacttaatctgtatttaatatacat
gtgtgatgtcagtaggatttgcactgactatagccatttttccaaccact
ggttttgtttttgtttgtttttgtttttgtttctgtttctgtttttgttt
tttaggaggatggccttggatggggtttagacaaagtcttgaactcacaa
tttggattaggcagatttccaactaatgatttccttgccttcctttacct
ttaccaagtgttggataatcttatcctcacaaactttttggaaatattca
tatttattcttgagttcaactgtcacaatctcaatatagctaatagataa
ttatctatctgtctgtctgtctgtctgtctgtctgtctgtctgcctgcct
gcctgcctgcctattacattttatcaagatacttctctgatctcatacta
gtactatgtattagagttaatgttatttttcaatgcattttaatggcaaa
tgggaaagctttcccctgtttatttttcctaatatatagattctataaat
agaacctaattatagattcaacctttaaaatatcaatgctctctttattt
attatttttctattgttgtgatgaaataccatgactaaagcaacttagag
aagagtttatttgggcttacggatccagaaggttagggtctgtgatggta
tagtggaggcaggagtcaacagagctggatgtttagagcaatagctaagg
cttacatctttgtactgcaaacacaagtagagaaagggattaaaattggt
atgctaggttaagttcttcaagtctttcttcaggcaaggaagatgctcag
cagttaagagccttgactgctctttcagagtcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_22767244_22768196
seq2: B6Ng01-222E23.b_47_998

seq1  GAATTCATATGTTCTGAGTGCCTCGGGAAGAAATGGGTCGTGAATGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGTTCTGAGTGCCTCGGGAAGAAATGGGTCGTGAATGGTAT  50

seq1  AATGAGATCATGTTCGCATCACTTTTGGGTCTTATCTAGGCTCAGAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATCATGTTCGCATCACTTTTGGGTCTTATCTAGGCTCAGAGCTC  100

seq1  TCCAGAGGAGGCCAGACCATTGTGTCTTTGGAGAAAGCAAAAGTCTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGAGGCCAGACCATTGTGTCTTTGGAGAAAGCAAAAGTCTGTGG  150

seq1  GAGTGATTTAGAAGGCTAACCTAAAGAAAATGTAAGGGTAGGCTCAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATTTAGAAGGCTAACCTAAAGAAAATGTAAGGGTAGGCTCAGAAT  200

seq1  AAGGTAGTTGAGTAGGAGCATCTTCTCTGAGAATTTTCAAAAAAAGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGTTGAGTAGGAGCATCTTCTCTGAGAATTTTCAAAAAAAGCAAA  250

seq1  AGTGAGGAGACAGAACATTCTAGAAGAAGCAAAAAAGTAGAAGACAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGAGACAGAACATTCTAGAAGAAGCAAAAAAGTAGAAGACAGGGC  300

seq1  CAAAATATGATTCATTAAAGGAGAATTAAGTTAAACTTTCTCTCCTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATGATTCATTAAAGGAGAATTAAGTTAAACTTTCTCTCCTGGGT  350

seq1  ATTTCTCTGAAGGTGGATGAATGAAAAGCAGAAGTTTCTGGAAATGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTGAAGGTGGATGAATGAAAAGCAGAAGTTTCTGGAAATGGTCC  400

seq1  ATTTTAGAGAAGGTAGATTCCAGGAGGTGTTATTGCTGCATAAAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAGAAGGTAGATTCCAGGAGGTGTTATTGCTGCATAAAGAAAGA  450

seq1  ATGATCACCCTTCCAGTCAGCGCCAGCTCTGGGCCACCTTGGGTGCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCACCCTTCCAGTCAGCGCCAGCTCTGGGCCACCTTGGGTGCAAAC  500

seq1  TCGGCAGACAGTCCCCTGGTACCCAGAGGTCTCTCTATGACGCAGGCGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAGACAGTCCCCTGGTACCCAGAGGTCTCTCTATGACGCAGGCGCC  550

seq1  CTAGTGTGCCCAGGATCTTAGAATCACTGGTAAGTGGAATGCAACATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTGCCCAGGATCTTAGAATCACTGGTAAGTGGAATGCAACATCTG  600

seq1  TTCCAAACCAATTGTGATGGGCCTGTGACAGCAGGAGCAAGGACACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACCAATTGTGATGGGCCTGTGACAGCAGGAGCAAGGACACAGGA  650

seq1  GGGCTGCCTGACCAGTGGCTCAGGTTCCTTCTGGTTGGTGCTGGTATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCCTGACCAGTGGCTCAGGTTCCTTCTGGTTGGTGCTGGTATACC  700

seq1  TTGGTTTCAAACACAGCAGACAGCCCCACGGTCATCAGAGGAGACACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCAAACACAGCAGACAGCCCCACGGTCATCAGAGGAGACACCAA  750

seq1  TTCCAGGTGCTGTAAAATGGCCAGGATCTTAGGATTCCAGGATACCAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTGCTGTAAAATGGCCAGGATCTTAGGATTCCAGGATACCAGGA  800

seq1  TACCAGGAGCTTGGTCACACCAAGATCTCAGGGTCTCAGAGGAAGCTTGA  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TACCAGGAGCTTGGTCACACCAAGATCTCA-GGTCTCAGAGGAAGCTTGA  849

seq1  CTGCCAAGAATTCTGACACACCCAGAATCACAGGTTCACAGAGAAAGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGAATTCTGACACACCCAGAATCACAGGTTCACAGAGAAAGGTG  899

seq1  GACTCTGAGGAGTCCTGAATCAAATGGGATTGCGGGAAGGACAGGCTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGAGGAGTCCTGAATCAAATGGGATTGCGGGAAGGACAGGCTCCA  949

seq1  ATC  953
      |||
seq2  ATC  952


seq1: chrX_22899301_22900443
seq2: B6Ng01-222E23.g_65_1200 (reverse)

seq1  TCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCT  50
      |||||| ||||| |||||||||||  |||||||||||||||| |||||  
seq2  TCAGGA-CTCTGAAAGAGCAGTCAAGGCTCTTAACTGCTGAG-CATCTTC  48

seq1  CCTGCCCCTGGAGAAAGGCTTTGAGAACTTAAACTTGCATACCATTTTTT  100
      | ||  |||| |||||| |||  ||||||||| || ||||||||  ||||
seq2  CTTG--CCTGAAGAAAGACTTGAAGAACTTAACCTAGCATACCA-ATTTT  95

seq1  ATTCCCTTTCTCTACTTTGTGTTTGCAGTAC-AAGATGTAAGCCCTTAGC  149
      | ||||||||||||| ||||||||||||||| |||||||||| |||||||
seq2  AATCCCTTTCTCTAC-TTGTGTTTGCAGTACAAAGATGTAAG-CCTTAGC  143

seq1  TATTGCTCTAAACATCCAGCTCTTGTTGACTCCTGCCTCCACTATACCAT  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATTGCTCTAAACATCCAGCTC-TGTTGACTCCTGCCTCCACTATACCAT  192

seq1  CACAGACCCTAACCTTCTGGATCCGTAAGCCCAAATAAACTCTTCTCTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACCCTAACCTTCTGGATCCGTAAGCCCAAATAAACTCTTCTCTAA  242

seq1  GTTGCTTTAGTCATGGTATTTCATCACAACAATAGAAAAATAATAAATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTAGTCATGGTATTTCATCACAACAATAGAAAAATAATAAATAA  292

seq1  AGAGAGCATTGATATTTTAAAGGTTGAATCTATAATTAGGTTCTATTTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCATTGATATTTTAAAGGTTGAATCTATAATTAGGTTCTATTTAT  342

seq1  AGAATCTATATATTAGGAAAAATAAACAGGGGAAAGCTTTCCCATTTGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTATATATTAGGAAAAATAAACAGGGGAAAGCTTTCCCATTTGCC  392

seq1  ATTAAAATGCATTGAAAAATAACATTAACTCTAATACATAGTACTAGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGCATTGAAAAATAACATTAACTCTAATACATAGTACTAGTAT  442

seq1  GAGATCAGAGAAGTATCTTGATAAAATGTAATAGGCAGGCAGGCAGGCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGAGAAGTATCTTGATAAAATGTAATAGGCAGGCAGGCAGGCAG  492

seq1  GCAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAATTATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAATTATCT  542

seq1  ATTAGCTATATTGAGATTGTGACAGTTGAACTCAAGAATAAATATGAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTATATTGAGATTGTGACAGTTGAACTCAAGAATAAATATGAATA  592

seq1  TTTCCAAAAAGTTTGTGAGGATAAGATTATCCAACACTTGGTAAAGGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAAAGTTTGTGAGGATAAGATTATCCAACACTTGGTAAAGGTAA  642

seq1  AGGAAGGCAAGGAAATCATTAGTTGGAAATCTGCCTAATCCAAATTGTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCAAGGAAATCATTAGTTGGAAATCTGCCTAATCCAAATTGTGA  692

seq1  GTTCAAGACTTTGTCTAAACCCCATCCAAGGCCATCCTCCTAAAAAACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGACTTTGTCTAAACCCCATCCAAGGCCATCCTCCTAAAAAACAA  742

seq1  AAACAGAAACAGAAACAAAAACAAAAACAAACAAAAACAAAACCAGTGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAACAGAAACAAAAACAAAAACAAACAAAAACAAAACCAGTGGT  792

seq1  TGGAAAAATGGCTATAGTCAGTGCAAATCCTACTGACATCACACATGTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAATGGCTATAGTCAGTGCAAATCCTACTGACATCACACATGTAT  842

seq1  ATTAAATACAGATTAAGTATGTGAGTACAAGTAAGTAGAATTATAAAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATACAGATTAAGTATGTGAGTACAAGTAAGTAGAATTATAAAAGT  892

seq1  AGAAAATCAAGAATACAATTTAGTGGATACAATGTCTTTCTAAGGTCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCAAGAATACAATTTAGTGGATACAATGTCTTTCTAAGGTCTGA  942

seq1  CACAAAACAGAGATGCAATAAAGAAAATGGTTTAGAACCAGAGAGATGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACAGAGATGCAATAAAGAAAATGGTTTAGAACCAGAGAGATGAC  992

seq1  TCAATGGATGAAGGTGCTTGCCAAGGGTCCAGGATACTTGACTCTGCTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGATGAAGGTGCTTGCCAAGGGTCCAGGATACTTGACTCTGCTGG  1042

seq1  TCTTCCTGTGGAGTTCCTATTCCCTTATAGGCCACAATCCTTCCTCCTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTGGAGTTCCTATTCCCTTATAGGCCACAATCCTTCCTCCTGT  1092

seq1  TCTTCCATAAGAGTCCCCAGGCTCTATCTACTGTGTGAGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATAAGAGTCCCCAGGCTCTATCTACTGTGTGAGAATTC  1136


| Home | SequenceCutter | Blast | Download |