BAC Information

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BAC

Clone NameB6Ng01-222I10
ChromosomeX (Build37)
Map Location 134,634,006 - 134,741,631
singlet/doubletdoublet
Overlap geneIl1rapl2
Upstream geneLOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
Downstream gene1700025D03Rik, Nrk, Serpina7, 4930513O06Rik, 4933428M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222I10.bB6Ng01-222I10.g
ACCGA037518GA037519
length1,135655
definitionB6Ng01-222I10.b B6Ng01-222I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,634,006 - 134,635,150)(134,740,978 - 134,741,631)
sequence
gaattccaagcccaaggtcttactcaaggacgatctaggactgttggaac
actgaggctttagctatgtcagaattcaatcttaaaatgcacttataata
gaatgatattgaaagagagcacgtgggtccatacactagactaacaccgg
aatggagaattaagggaatgccagactccaggagtagagtttccttgaaa
ctcttttcctcatgagtgacttttaaacctctcggcttccgctgacttga
ccggagtgcgtggcagctaagtgtgcatctgtgatgactgacatagggca
gacatctataattatatgaggatgataagaaacagaaactaaacagagac
acagtgaaagcaaatctttacttatatatcacaactctattatcaatata
ttctccagggtctcactatcaagaaatagtaaacaagccaacctgtgtag
aataaacatacctatcccctctcactagagagtttctttagggacaatga
tggtgctgttgtacattactattgggaattatattagttcacgctaattg
aaaacaactttcttctaccctcgtttttcaacttctgaccacatataacc
atattattaggctttaggtatcattttttttctgaggtgggactaagcat
tactctgtatttccagagtggttagtgaaagaagacataagagagtatag
tcttgaccttgttattcatgagtatgttaactaattgttcatgtatagga
aaatgtaattgaataaattgccagctttccagaaatgtattcctattttt
ttctgcctcagagtaagacatcgaacttccactaaatggcaccttgattt
aaacatttctatatttttgtatttctacttgtcttagttatttttcataa
atactatgacaagacagcaagatcaccatagaagaaagaatttaccaggg
gtttaactgtagagagtgagctcatttccataatggcaggaacgcagcat
ccagaaggcaggtttgatactgggagaggtagctaggagctacctgcaga
attacaagcacgatcagaggatgggaagagagagagaagagatgaagaga
gagagagaagaagcagctggaagctgatagctttg

gaattctattacccctaacaggtcaagcctagtgaggttgttcccaggag
tgaagtggataagaggctcatgttctggcagagtaatatcaaaagaaatt
aaaccatcaaatgggacctggaatgggttactctaaagtttatgattgat
tcaattaacatggcagagattttccacctgaatgagagttctgcaagact
acagaggatgccagcaccaggtacaagcaaggatttctaagattatacag
cctcttaatagaaatcgtccctagtccccagagggcagaaccagagacag
atctgaacaggaaacttctgccaactgctccaaggtgagtcagctactga
gagtgcacagagggtttgccagtccacatggaccaaagcatagtgttagc
tgatggccttcttccaacttggcatcatgctaaatggaggagaacatgga
tttcaaaggctcttggtatattcagaaagtggaacagaactctgtctcag
tgggagggcagtgggatggaaaggtatgagttggaggagggggtaaaagc
tgggctggaggttggtcttttcctctctctcttgtggttctaagatatgt
caaaattaactatggtgttaattttatccacaggtcgaaggtaggaagag
ggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_134634006_134635150
seq2: B6Ng01-222I10.b_43_1177

seq1  GAATTCCAAGCCCAAGGTCTTACTCAAGGACGATCTAGGACTGTTGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAAGGTCTTACTCAAGGACGATCTAGGACTGTTGGAAC  50

seq1  ACTGAGGCTTTAGCTATGTCAGAATTCAATCTTAAAATGCACTTATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTTTAGCTATGTCAGAATTCAATCTTAAAATGCACTTATAATA  100

seq1  GAATGATATTGAAAGAGAGCACGTGGGTCCATACACTAGACTAACACCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATATTGAAAGAGAGCACGTGGGTCCATACACTAGACTAACACCGG  150

seq1  AATGGAGAATTAAGGGAATGCCAGACTCCAGGAGTAGAGTTTCCTTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAATTAAGGGAATGCCAGACTCCAGGAGTAGAGTTTCCTTGAAA  200

seq1  CTCTTTTCCTCATGAGTGACTTTTAAACCTCTCGGCTTCCGCTGACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCCTCATGAGTGACTTTTAAACCTCTCGGCTTCCGCTGACTTGA  250

seq1  CCGGAGTGCGTGGCAGCTAAGTGTGCATCTGTGATGACTGACATAGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGTGCGTGGCAGCTAAGTGTGCATCTGTGATGACTGACATAGGGCA  300

seq1  GACATCTATAATTATATGAGGATGATAAGAAACAGAAACTAAACAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTATAATTATATGAGGATGATAAGAAACAGAAACTAAACAGAGAC  350

seq1  ACAGTGAAAGCAAATCTTTACTTATATATCACAACTCTATTATCAATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAAGCAAATCTTTACTTATATATCACAACTCTATTATCAATATA  400

seq1  TTCTCCAGGGTCTCACTATCAAGAAATAGTAAACAAGCCAACCTGTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGGGTCTCACTATCAAGAAATAGTAAACAAGCCAACCTGTGTAG  450

seq1  AATAAACATACCTATCCCCTCTCACTAGAGAGTTTCTTTAGGGACAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACATACCTATCCCCTCTCACTAGAGAGTTTCTTTAGGGACAATGA  500

seq1  TGGTGCTGTTGTACATTACTATTGGGAATTATATTAGTTCACGCTAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGTTGTACATTACTATTGGGAATTATATTAGTTCACGCTAATTG  550

seq1  AAAACAACTTTCTTCTACCCTCGTTTTTCAACTTCTGACCACATATAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACTTTCTTCTACCCTCGTTTTTCAACTTCTGACCACATATAACC  600

seq1  ATATTATTAGGCTTTAGGTATCATTTTTTTTCTGAGGTGGGACTAAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTAGGCTTTAGGTATCATTTTTTTTCTGAGGTGGGACTAAGCAT  650

seq1  TACTCTGTATTTCCAGAGTGGTTAGTGAAAGAAGACATAAGAGAGTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTATTTCCAGAGTGGTTAGTGAAAGAAGACATAAGAGAGTATAG  700

seq1  TCTTGACCTTGTTATTCATGAGTATGTTAACTAATTGTTCATGTATAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACCTTGTTATTCATGAGTATGTTAACTAATTGTTCATGTATAGGA  750

seq1  AAATGTAATTGAATAAATTGCCAGCTTTCCAGAAATGTATTCCTATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAATTGAATAAATTGCCAGCTTTCCAGAAATGTATTCCTATTTTT  800

seq1  TTCTGCCTCAGAGTAAGACATCGAACTTCCACTAAATGGCACCTTGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTCAGAGTAAGACATCGAACTTCCACTAAATGGCACCTTGATTT  850

seq1  AAACATTTCTATATTTTTGTATTTCTACTTGTCTTAGTTATTTTTCATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTCTATATTTTTGTATTTCTACTTGTCTTAGTTATTTTTCATAA  900

seq1  ATACTATGACAAGACAGCAAGATCACCATAGAAGAAAGAATTTACCAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATGACAAGACAGCAAGATCACCATAGAAGAAAGAATTTACCAGGG  950

seq1  GTTTAACTGTAGAGAGTGAGCTCATTTCCATAATGGCAGGGAACGCAGCA  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTTTAACTGTAGAGAGTGAGCTCATTTCCATAATGGCA-GGAACGCAGCA  999

seq1  TCCAGAAGGCAGGTTTGATACT-GGAGAAGTAGCTAAGAGCTACCTGCAG  1049
      |||||||||||||||||||||| ||||| ||||||| |||||||||||||
seq2  TCCAGAAGGCAGGTTTGATACTGGGAGAGGTAGCTAGGAGCTACCTGCAG  1049

seq1  ATATAACAAGCACGAACCAGAAGGAGTGGGAGAGAGAGAGAGAGAGAGAG  1099
      | || ||||||||| | ||| |||| ||||| ||||||||||| ||||| 
seq2  A-ATTACAAGCACG-ATCAG-AGGA-TGGGA-AGAGAGAGAGA-AGAGAT  1093

seq1  AGAGAGAGAGAGAGAGAGAGCAAGCTGGAAAGCTGGAATAGCTTTG  1145
        ||||||||||||| |||   |||||| ||||||  |||||||||
seq2  GAAGAGAGAGAGAGA-AGAAGCAGCTGG-AAGCTG--ATAGCTTTG  1135


seq1: chrX_134740978_134741631
seq2: B6Ng01-222I10.g_65_719 (reverse)

seq1  AGTCCCTCTTCCT-CCTTCGACCTGTGGATTAAAATTTACA-CATAGTTA  48
      ||||||||||||| ||||||||||||||| ||||||| ||| ||||||||
seq2  AGTCCCTCTTCCTACCTTCGACCTGTGGA-TAAAATTAACACCATAGTTA  49

seq1  ATTTTGACATATCTTAGAACCACAAGAGAGAGAGGAAAAGACCAACCTCC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACATATCTTAGAACCACAAGAGAGAGAGGAAAAGACCAACCTCC  99

seq1  AGCCCAGCTTTTACCCCCTCCTCCAACTCATACCTTTCCATCCCACTGCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCTTTTACCCCCTCCTCCAACTCATACCTTTCCATCCCACTGCC  149

seq1  CTCCCACTGAGACAGAGTTCTGTTCCACTTTCTGAATATACCAAGAGCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTGAGACAGAGTTCTGTTCCACTTTCTGAATATACCAAGAGCCT  199

seq1  TTGAAATCCATGTTCTCCTCCATTTAGCATGATGCCAAGTTGGAAGAAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCCATGTTCTCCTCCATTTAGCATGATGCCAAGTTGGAAGAAGG  249

seq1  CCATCAGCTAACACTATGCTTTGGTCCATGTGGACTGGCAAACCCTCTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCTAACACTATGCTTTGGTCCATGTGGACTGGCAAACCCTCTGT  299

seq1  GCACTCTCAGTAGCTGACTCACCTTGGAGCAGTTGGCAGAAGTTTCCTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTCAGTAGCTGACTCACCTTGGAGCAGTTGGCAGAAGTTTCCTGT  349

seq1  TCAGATCTGTCTCTGGTTCTGCCCTCTGGGGACTAGGGACGATTTCTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTGTCTCTGGTTCTGCCCTCTGGGGACTAGGGACGATTTCTATT  399

seq1  AAGAGGCTGTATAATCTTAGAAATCCTTGCTTGTACCTGGTGCTGGCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTGTATAATCTTAGAAATCCTTGCTTGTACCTGGTGCTGGCATC  449

seq1  CTCTGTAGTCTTGCAGAACTCTCATTCAGGTGGAAAATCTCTGCCATGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGTCTTGCAGAACTCTCATTCAGGTGGAAAATCTCTGCCATGTT  499

seq1  AATTGAATCAATCATAAACTTTAGAGTAACCCATTCCAGGTCCCATTTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATCAATCATAAACTTTAGAGTAACCCATTCCAGGTCCCATTTGA  549

seq1  TGGTTTAATTTCTTTTGATATTACTCTGCCAGAACATGAGCCTCTTATCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAATTTCTTTTGATATTACTCTGCCAGAACATGAGCCTCTTATCC  599

seq1  ACTTCACTCCTGGGAACAACCTCACTAGGCTTGACCTGTTAGGGGTAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTCCTGGGAACAACCTCACTAGGCTTGACCTGTTAGGGGTAATA  649

seq1  GAATTC  654
      ||||||
seq2  GAATTC  655


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