BAC Information

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BAC

Clone NameB6Ng01-222J20
ChromosomeX (Build37)
Map Location 107,554,271 - 107,555,332
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC213474, LOC245573
Downstream geneEG634340, LOC668530, LOC100043316, Pou3f4, Cylc1, LOC100042872, Rps6ka6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222J20.bB6Ng01-222J20.g
ACCGA037586GA037587
length1,0671,070
definitionB6Ng01-222J20.b B6Ng01-222J20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttctacatgataaccaccaattgtgccagcaccttttgttgaaa
atgctgtctttttttcactggatggttttgctcccttgtcaaagatcaag
tggccataggtgtgtgggttcatttttaggtctttaattctattccattg
gtctacttgtctgtcgctatactagtaccatgcagtttttaacacaattg
ctctgtagtacagcttgaggtcaggcatggtgattccaccagagggtttt
tttgtttttgtttttttttttttatccttgagaagatttttttgctatcc
taggtttttttgttattccagatgaatttgcagattgctccttctaattc
attgaagaattgagttggaattttgatggggattgcattgaatctgtata
ttgcttatggcaagacagccatttttagtatattgatcctgccaatctat
gagcatgggaagtcttttcatcttctgagatcttctttaatttctctctt
cagagacttgaacttttatcatatagatctttcacttccttagttagagt
cacaccaaggtattttacattatttataaatattgagaagggtgttgttt
ccctaatttctttctcagcctgtttatcctttttgtacagaagggccatt
gacttgtttgagttaattttataaccaactactttgctgaagctgtttct
caggtttaggagttctctggtggaatttttagggtcacttatatatacta
tcatatcatctgcaaaaagtgatattttttgacttcttcctttcccaatt
tgtaccccctttgatctcctattgttgtcaaatttgctcttgctaggact
tcaagtacaatgttgaataggtaggggagaaagggccttgtatagtccct
gtttttagtgggattgcttccagcttctcacaattactttgatgttggct
actgggttgctacagattgcttttatcatgtttaaggcatgggccttgaa
ttccttgatctttccagacttttatcatgaatgggtgttggattttggtc
aaatgcttttttctgca
gaattcatctgggcctgagaggtttttaatcagaaggctttaaatagcca
tttaattatctggtattctctgtaggggtggtttgatggatatgaattat
tctagctggtttgtatcatgagatattttttctttcttcttcaactgtgg
aaaatagtttggtcaagttggctttatccctaaaatgcagtgatagttca
acatttgaaagccagaaaaaaaaaagacaaaattcaaaattcacatgaac
atttcaatagatgctttctggcatttcccacagccatctgtcctgcccca
ccccatgttctctcttacatgcatgctctctctgttgctgtctgtctgtc
tgtctgtctgtctatctttctgctcaggactctgttctgcccctgcccct
gtgttgagtagccctgtgccagccagtcctttgtgctcacatgctgtctg
gcctgttgtggctcctccgggtttgtgtcctttggaaataagctattttt
caaatcactgtaaaaatctttagcacagcagtatcattcttgaggtggat
tgctatattctcgacagataggaaagttgaataacttgtctctggatgac
tttctgggatgaggaaggcaaaacaatgacagggactgcttcagcagaaa
ggaagaggctggtactcagtcccacccaacaagtattttgtgttcttgtt
tttgtatgggttgatctttccttcaggaattcttcactcaaggtaaagtc
ttgatgtctttggagaaattgaatgcataacccatcaagttactcacaca
tttactatcaaacaaagtattctgactcaaaaagataaatgttttccttt
catttttgaacttgtatagtttataaatcatgcatgttctatatgacatg
aaaatagagataaaagtattctgggagatatatctaaaccatttgacaat
ataaccctatgacatagaggccatcttcaaatttatgttcagaatcagca
attggaacttagatattcagctgacgaaggtgcttgcctccaagttaaaa
atgctggaatttgatcaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_107554271_107555332
seq2: B6Ng01-222J20.g_68_1137

seq1  GAATTCATCTGGGCCTGAGAGGTTTTTAATCAGAAGGCTTTAAATAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGGGCCTGAGAGGTTTTTAATCAGAAGGCTTTAAATAGCCA  50

seq1  TTTAATTATCTGGTATTCTCTGTAGGGGTGGTTTGATGGATATGAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTATCTGGTATTCTCTGTAGGGGTGGTTTGATGGATATGAATTAT  100

seq1  TCTAGCTGGTTTGTATCATGAGATATTTTTTCTTTCTTCTTCAACTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGGTTTGTATCATGAGATATTTTTTCTTTCTTCTTCAACTGTGG  150

seq1  AAAATAGTTTGGTCAAGTTGGCTTTATCCCTAAAATGCAGTGATAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTTGGTCAAGTTGGCTTTATCCCTAAAATGCAGTGATAGTTCA  200

seq1  ACATTTGAAAGCCAGAAAAAAAAAAGACAAAATTCAAAATTCACATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAAAGCCAGAAAAAAAAAAGACAAAATTCAAAATTCACATGAAC  250

seq1  ATTTCAATAGATGCTTTCTGGCATTTCCCACAGCCATCTGTCCTGCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATAGATGCTTTCTGGCATTTCCCACAGCCATCTGTCCTGCCCCA  300

seq1  CCCCATGTTCTCTCTTACATGCATGCTCTCTCTGTTGCTGTCTGTCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTTCTCTCTTACATGCATGCTCTCTCTGTTGCTGTCTGTCTGTC  350

seq1  TGTCTGTCTGTCTATCTTTCTGCTCAGGACTCTGTTCTGCCCCTGCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTGTCTATCTTTCTGCTCAGGACTCTGTTCTGCCCCTGCCCCT  400

seq1  GTGTTGAGTAGCCCTGTGCCAGCCAGTCCTTTGTGCTCACATGCTGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAGTAGCCCTGTGCCAGCCAGTCCTTTGTGCTCACATGCTGTCTG  450

seq1  GCCTGTTGTGGCTCCTCCGGGTTTGTGTCCTTTGGAAATAAGCTATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTGTGGCTCCTCCGGGTTTGTGTCCTTTGGAAATAAGCTATTTTT  500

seq1  CAAATCACTGTAAAAATCTTTAGCACAGCAGTATCATTCTTGAGGTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCACTGTAAAAATCTTTAGCACAGCAGTATCATTCTTGAGGTGGAT  550

seq1  TGCTATATTCTCGACAGATAGGAAAGTTGAATAACTTGTCTCTGGATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATTCTCGACAGATAGGAAAGTTGAATAACTTGTCTCTGGATGAC  600

seq1  TTTCTGGGATGAGGAAGGCAAAACAATGACAGGGACTGCTTCAGCAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGATGAGGAAGGCAAAACAATGACAGGGACTGCTTCAGCAGAAA  650

seq1  GGAAGAGGCTGGTACTCAGTCCCACCCAACAAGTATTTTGTGTTCTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGCTGGTACTCAGTCCCACCCAACAAGTATTTTGTGTTCTTGTT  700

seq1  TTTGTATGGGTTGATCTTTCCTTCAGGAATTCTTCACTCAAGGTAAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGGGTTGATCTTTCCTTCAGGAATTCTTCACTCAAGGTAAAGTC  750

seq1  TTGATGTCTTTGGAGAAATTGAATGCATAA-CCATCAAGTTACTCACACA  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGATGTCTTTGGAGAAATTGAATGCATAACCCATCAAGTTACTCACACA  800

seq1  TTTACTATC-AACAAAGTATTCTGACTCAAAAAGATAAATGTTTT-CTTT  847
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  TTTACTATCAAACAAAGTATTCTGACTCAAAAAGATAAATGTTTTCCTTT  850

seq1  CATTTTTGAAC-TGTATAGTTTATAAATCATGCATG-TCTATATGACATG  895
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  CATTTTTGAACTTGTATAGTTTATAAATCATGCATGTTCTATATGACATG  900

seq1  AAAATAGAGATAAAAGTA-TCT-GGAGATATATCTAAA-CATTTGACAAT  942
      |||||||||||||||||| ||| ||||||||||||||| |||||||||||
seq2  AAAATAGAGATAAAAGTATTCTGGGAGATATATCTAAACCATTTGACAAT  950

seq1  ATAA-CCTATGACATAGA-GCCATCTTCAAAATTTATGTTCAAGAATCAA  990
      |||| ||||||||||||| ||||||||| |||||||||||| |||||| |
seq2  ATAACCCTATGACATAGAGGCCATCTTC-AAATTTATGTTC-AGAATC-A  997

seq1  GCAATTGG-ACTTAGATAATTCAGCTGACGGAGGTGCTTGCCTCCCAAGT  1039
      |||||||| |||||||| |||||||||||| |||||||||||| ||||||
seq2  GCAATTGGAACTTAGAT-ATTCAGCTGACGAAGGTGCTTGCCT-CCAAGT  1045

seq1  T-AAAATGCT-GAATTTGATCACCC  1062
      | |||||||| ||||||||||||||
seq2  TAAAAATGCTGGAATTTGATCACCC  1070