BAC Information

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BAC

Clone NameB6Ng01-223P11
ChromosomeX (Build37)
Map Location 27,405,106 - 27,406,270
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664844, LOC100042154, EG664861, LOC664866, LOC100042175, LOC100039194, LOC100039208, EG664877, LOC664881, LOC100039240, LOC100039248
Downstream geneLOC100039073, EG664890, LOC664898, LOC22526, EG664906, LOC664917, LOC100039324, LOC100039334, LOC100039096, EG664923, LOC100039364, LOC100039377, LOC100039386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223P11.bB6Ng01-223P11.g
ACCGA038563GA038564
length1,1721,139
definitionB6Ng01-223P11.b B6Ng01-223P11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttggtttctccatctattgtaattgagatttttgctggtgtat
attagcctgggctggcatttgtgttctcttatgtataacatccgtccagg
atcttctggctttcatagactctgcagataagtctggtgtaattctaata
ggtctgactttatatgttacttgagtattttcccttactgattttaatat
tctatctttatttagtgcatttgttgttctgaatattacatgtcaggaga
aatttcttttctggtccagcctatttggaattctctgggcttcttatatg
ttcatgggaatttctttctttaggtgttggaagttttcttctataacttt
gttgaagatatttgctggccttttaagttgagaatcttcattctcatcta
ctattatccataggtttggtcttctcattgtgtcctggatttcctgaata
ttttgagttgggatctttttgcattttccattttctttgattgttgtgtt
catgttacctatggaatcttctgcatctgagattctctcttctatctctt
gtattctcttgatgatgctcacatctatgtttcctgatatctttcctagg
atttttatctccagagttgtttccctttaggttttcttcattgtttctac
ttctatttttacatcttggatttttttttattcaattccatcatctgttt
ggttgtgttttcctgtaattctttacgggatttttgtgtttcttctacca
gcttagcagtgtttacctgtagttctttaaagacttgtacttgtttagca
gtgttctcctgtaattccttgagggatttctgtgcttcctctttaaaggg
ctttctactggtttagcagtgttctccctgtaattccttgagggattgct
gtgcttcctctttaagggcttctacctgtttagccgtgttctcctgtatt
tctttaagtaagttattaatgtacatccctaaatcttctaccaccatcag
agatattgatttttaaatccgagtcttgcttgtcgggtgtgtttggggta
tccaggactttctgtggtgggcttactgaattctgatgatgccccattgt
tctttggttatgtagttaggaacttttatccattggcccttctccgcaat
tagttaatctctctgggtgtgt
gaattccatggtccatactgatacacaagatcattatgaggtaagtattc
tgagctggcactggataacagatcagtggctgagattctacatatcataa
ggaatcctgttgatgttcttgatttatcaatttcaccctaaatttcaagc
aaacaatgtattttgatgttgtggtcctacctgtgagaagcagctatact
gatgtcagtgatgcattttgtgaacagaaattgggcaggagtccattata
tctattgctgatggagatgctgatgatggctatgatctgtgttgctgctt
gagaatctgataaattccaaagtccttactgatgcttgaattcatattga
ggtaaattttcctagatggcactgaagatcagactgatgtctgagataat
acctgatacaggaaattctctttatgtttactgatgaatggatatagccc
cagatgttaaaaatgaaatgtactgtgatgtctatgttactacctgaaac
atgaagctatattaatgtcagagtggcatgataggaatggcaataatgat
ggaatctattcctattgatgatggagacctaatttatggtggtgatctgt
gttggtgcgatctggtgaatttgacagtccatcctgattctcaagttgat
attgaggtaagtaactctgagctagcacttgcaatccaattgatgtttga
gatcaagcattccacaggaaattctgttgaagactctactacattcatgt
tggcccatagttaaccatgtaatttataagatctatactactaccaaaag
agacagagatgtcaaaaagaataaacaaacaaaataaaacaaaacaaaca
aacaaacaaacaaacaaaaacaaaaacaacaaaaaaaaaactatcctgcc
actggatgtgcatggccataatatcttctgcactcttaatcgaatattaa
acatagtgttgtatacctgggcacagataccatgacacgatgtcattggc
aaccacctttgtcagtgatcactggtgctactgagagccattttaataac
agttatcccaagtgccttacggaaacctatggtggatgtcatcattcatc
cagaactcgattcatctagtacctgatgatctggggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_27405106_27406270
seq2: B6Ng01-223P11.g_69_1207 (reverse)

seq1  TCTCCCCAGAATCATCATGTACTATGGGTTTAAACGGGGTTTCTGGATG-  49
      ||||||||| ||||||| ||||||   | | || || |  ||||||||| 
seq2  TCTCCCCAG-ATCATCAGGTACTA---GATGAATCGAG--TTCTGGATGA  44

seq1  ATGATTGACAT-CAACATA-GTTTCTGT-AGGCACTTTGGATTACTGTTA  96
      |||| |||||| || |||| ||||| || |||||||| |||| |||||||
seq2  ATGA-TGACATCCACCATAGGTTTCCGTAAGGCACTTGGGATAACTGTTA  93

seq1  TTAAAATGGCTCTCAGTAGCA-CAGTGATCACTGACAAA-GTGGTTGCCA  144
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  TTAAAATGGCTCTCAGTAGCACCAGTGATCACTGACAAAGGTGGTTGCCA  143

seq1  ATGACATCGTGTCATGGTATCTGTTGCCAGGTATACAACACTATGTTTAA  194
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  ATGACATCGTGTCATGGTATCTGTGCCCAGGTATACAACACTATGTTTAA  193

seq1  TA-TCGATTAAGAGTGCAGAAGATATTATGGCCATGCACATCCAGTGGCA  243
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGATTAAGAGTGCAGAAGATATTATGGCCATGCACATCCAGTGGCA  243

seq1  GGATAGTTTTTTTTTTGTTTGTTTTTTGTTTTTTGTTTTTTGTTTTGTTT  293
      ||||||||||||||||| ||||||||   ||||||||| ||  |||||||
seq2  GGATAGTTTTTTTTTTG-TTGTTTTT--GTTTTTGTTTGTTTGTTTGTTT  290

seq1  TGTTTTGTTTTGTTTTGTTTTGTTTTTGTTTTTATTTTGTTTTGTTTTAT  343
         ||||||||||||| ||||||||                    |||||
seq2  --GTTTGTTTTGTTTTATTTTGTTT-------------------GTTTAT  319

seq1  TTCTTTTTTGACATCTCTGTCTCTTTTGGTAGTAGTATAGATCTTATAAA  393
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  T--CTTTTTGACATCTCTGTCTCTTTTGGTAGTAGTATAGATCTTATAAA  367

seq1  TTACATGGTTAACTATGGGCCAACATGAATGTAGTAGAGTCTTCAACAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGGTTAACTATGGGCCAACATGAATGTAGTAGAGTCTTCAACAGA  417

seq1  ATTTCCTGTGGAATGCTTGATCTCAAACATCAATTGGATTGCAAGTGCTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGTGGAATGCTTGATCTCAAACATCAATTGGATTGCAAGTGCTA  467

seq1  GCTCAGAGTTACTTACCTCAATATCAACTTGAGAATCAGGATGGACTGTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGTTACTTACCTCAATATCAACTTGAGAATCAGGATGGACTGTC  517

seq1  AAATTCACCAGATCGCACCAACACAGATCACCACCATAAATTAGGTCTCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACCAGATCGCACCAACACAGATCACCACCATAAATTAGGTCTCC  567

seq1  ATCATCAATAGGAATAGATTCCATCATTATTGCCATTCCTATCATGCCAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAATAGGAATAGATTCCATCATTATTGCCATTCCTATCATGCCAC  617

seq1  TCTGACATTAATATAGCTTCATGTTTCAGGTAGTAACATAGACATCACAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATTAATATAGCTTCATGTTTCAGGTAGTAACATAGACATCACAG  667

seq1  TACATTTCATTTTTAACATCTGGGGCTATATCCATTCATCAGTAAACATA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCATTTTTAACATCTGGGGCTATATCCATTCATCAGTAAACATA  717

seq1  AAGAGAATTTCCTGTATCAGGTATTATCTCAGACATCAGTCTGATCTTCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATTTCCTGTATCAGGTATTATCTCAGACATCAGTCTGATCTTCA  767

seq1  GTGCCATCTAGGAAAATTTACCTCAATATGAATTCAAGCATCAGTAAGGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATCTAGGAAAATTTACCTCAATATGAATTCAAGCATCAGTAAGGA  817

seq1  CTTTGGAATTTATCAGATTCTCAAGCAGCAACACAGATCATAGCCATCAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAATTTATCAGATTCTCAAGCAGCAACACAGATCATAGCCATCAT  867

seq1  CAGCATCTCCATCAGCAATAGATATAATGGACTCCTGCCCAATTTCTGTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTCCATCAGCAATAGATATAATGGACTCCTGCCCAATTTCTGTT  917

seq1  CACAAAATGCATCACTGACATCAGTATAGCTGCTTCTCACAGGTAGGACC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATGCATCACTGACATCAGTATAGCTGCTTCTCACAGGTAGGACC  967

seq1  ACAACATCAAAATACATTGTTTGCTTGAAATTTAGGGTGAAATTGATAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATCAAAATACATTGTTTGCTTGAAATTTAGGGTGAAATTGATAAA  1017

seq1  TCAAGAACATCAACAGGATTCCTTATGATATGTAGAATCTCAGCCACTGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAACATCAACAGGATTCCTTATGATATGTAGAATCTCAGCCACTGA  1067

seq1  TCTGTTATCCAGTGCCAGCTCAGAATACTTACCTCATAATGATCTTGTGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATCCAGTGCCAGCTCAGAATACTTACCTCATAATGATCTTGTGT  1117

seq1  ATCAGTATGGACCATGGAATTC  1165
      ||||||||||||||||||||||
seq2  ATCAGTATGGACCATGGAATTC  1139