BAC Information

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BAC

Clone NameB6Ng01-225O03
ChromosomeX (Build37)
Map Location 105,531,891 - 105,681,971
singlet/doubletdoublet
Overlap geneGm378, LOC668516
Upstream geneLOC385404, Itm2a, 4933401B06Rik, Tbx22, 2610002M06Rik, Gm732
Downstream geneGm379, Brwd3, 5730416F02Rik, Nsbp1, Sh3bgrl, EG622976, LOC100042831, LOC213474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225O03.bB6Ng01-225O03.g
ACCGA039965GA039966
length1,0671,142
definitionB6Ng01-225O03.b B6Ng01-225O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,680,906 - 105,681,971)(105,531,891 - 105,533,028)
sequence
gaattcatgaagtattcataaggcttgaattatcttcatttttttgaaat
ctctatttgagctttcaatatgcaatgctcttcagtttttcgcagcaaaa
ctcctttcgttattgagtccaagaaggtacctctttctttgttgaaaact
gatggttgttttggatcagggctcattggatctgctgaatactggaatac
agatagtgtctgtgggtttggaatggtaggtgatgtagactttggaaaag
aaaataatgactgcagggtaaaagattttgatttcaaacttgaagatttt
ggtgatggtggaaccagtttttttgctgatcgatcaatgtaaatcttccc
cgatgaaggaattggaaatcttgatgactgtggatcaaaacgtcttggag
aaactgaatgttttggtgagtaagcagactgacatcttgctgaatgaact
gatgcttgtaaaaatgaatcagataatggaaatgaactttggtaagtttc
tagggttgaatgacttggcaatgctgaatttgatgtctttgaatacgttg
gaaaaatgcattttgtttgtgattggtgtgaaaatcttggtgatgatata
gctgaaggtcttggtgaatttgaagctgaaagtcttggtgagtgtggaaa
caatgtttttgaagatagatggtctaaagatgatggtgactgtacaaagg
aagtatgaacaagtagatctgaatctttactttttgtttcagttcttctt
aggcttactggagaaaaagacatcagtggcattttttcaattatgttatc
ttcttctggtgaatcatcctctatttccaaacattcagaaggtagagtta
gaaattgaaactcattgtcttcttcagtagttttaacacccatatcagga
ctagtctggaagtagttgtaaagatgtttggtttctgaagttctcaaaca
ggtgatggaaactgtgtttgggaatgaacatttgagacagggcactctgt
atttgaatttttttacacagttaaccaatcatgacgtaattggaaggtgg
tgtaactgatgattttc

gaattcagaaagtgcgcttggaggtcaattttaaagaagaaataaaaaga
aatgttttgatggatttaaaaagtagattctaaaactcataggaaaggtt
aaaaataataatgcagtaaatactgtgggagatttaaaagggaatacatt
cccaagagaaatagaaaacatagaatacaaaagacaaggaaaatcaacaa
gtaatttttatattttttatataatatagtaggcttaaaagcattagttt
ctcttgggatgaagatcatcatgtatattttttaaacttcataaagttat
aataaatataatacctataactcttggtggctagaaagagtttttaaatt
atcacaaggtctgctcccaaagaaacagtttgactcttgacaattagaca
tttgtatgtgactctaataacgaatgaaatatagtaggtcagaataaata
tataatgtagagagctactcataaatccatcaagagatatttatatgacc
tactgtctctgaacaagaatttatgaatgttatggctatacaactttatt
ttttgaaataaacatcaagagatatttattataaaaaggttatagaaaat
aatacttgtgtgactttttctggggatacataaagaaatatccactactc
tagctatggggcccaacacacattacaatatcaattttttcaaagtgtta
acttggtgatccaggagtttattgggcttagtttcaggaacatggatgac
acaaacgtctgcaaaaccaaaatacccagcccagtctgcatgacaactca
caaaacttgcacttttatccctgtagaacttgtattaacagggaagagtt
tccacacctcatatgaataaatttcaagattattcaagctgtgcagcctg
aaaatcttggtttactctatgcatcatcctttctattcaaaatatactat
atcttatggacaaagaaatgattttttacttctattgatgctaacagaag
gtaaatacagtagccataagaatatagaatacactagttgtttgaatttc
atttttcattcattaattagccctccatacagtagcagctgtagatgaac
acaaatctaatgtttaagaatacagtgatggtcgttgtcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_105680906_105681971
seq2: B6Ng01-225O03.b_48_1114 (reverse)

seq1  GAAAATCATCAGTTACACCACCT--CCATTACGTCATGATTGGTTAACTG  48
      |||||||||||||||||||||||  | |||||||||||||||||||||||
seq2  GAAAATCATCAGTTACACCACCTTCCAATTACGTCATGATTGGTTAACTG  50

seq1  TGTTAAAAAATTCAAATACAGAGTGCCCTGTCTCAAATGTTCATTCCCAA  98
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAAATTCAAATACAGAGTGCCCTGTCTCAAATGTTCATTCCCAA  100

seq1  ACACAGTTTCCATCACCTGTTTTGAGAACTTCAGAAACCAAACATCTTTA  148
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACACAGTTTCCATCACCTG-TTTGAGAACTTCAGAAACCAAACATCTTTA  149

seq1  CAACTACTTCCAGACTAGTCCTGATATGGGTGTTAAAACTACTGAAGAAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACTTCCAGACTAGTCCTGATATGGGTGTTAAAACTACTGAAGAAG  199

seq1  ACAATGAGTTTCAATTTCTAACTCTACCTTCTGAATGTTTGGAAATAGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGTTTCAATTTCTAACTCTACCTTCTGAATGTTTGGAAATAGAG  249

seq1  GATGATTCACCAGAAGAAGATAACATAATTGAAAAAATGCCACTGATGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTCACCAGAAGAAGATAACATAATTGAAAAAATGCCACTGATGTC  299

seq1  TTTTTCTCCAGTAAGCCTAAGAAGAACTGAAACAAAAAGTAAAGATTCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCCAGTAAGCCTAAGAAGAACTGAAACAAAAAGTAAAGATTCAG  349

seq1  ATCTACTTGTTCATACTTCCTTTGTACAGTCACCATCATCTTTAGACCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTGTTCATACTTCCTTTGTACAGTCACCATCATCTTTAGACCAT  399

seq1  CTATCTTCAAAAACATTGTTTCCACACTCACCAAGACTTTCAGCTTCAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTCAAAAACATTGTTTCCACACTCACCAAGACTTTCAGCTTCAAA  449

seq1  TTCACCAAGACCTTCAGCTATATCATCACCAAGATTTTCACACCAATCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAAGACCTTCAGCTATATCATCACCAAGATTTTCACACCAATCAC  499

seq1  AAACAAAATGCATTTTTCCAACGTATTCAAAGACATCAAATTCAGCATTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATGCATTTTTCCAACGTATTCAAAGACATCAAATTCAGCATTG  549

seq1  CCAAGTCATTCAACCCTAGAAACTTACCAAAGTTCATTTCCATTATCTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCATTCAACCCTAGAAACTTACCAAAGTTCATTTCCATTATCTGA  599

seq1  TTCATTTTTACAAGCATCAGTTCATTCAGCAAGATGTCAGTCTGCTTACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTACAAGCATCAGTTCATTCAGCAAGATGTCAGTCTGCTTACT  649

seq1  CACCAAAACATTCAGTTTCTCCAAGACGTTTTGATCCACAGTCATCAAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAACATTCAGTTTCTCCAAGACGTTTTGATCCACAGTCATCAAGA  699

seq1  TTTCCAATTCCTTCATCGGGGAAGATTTACATTGATCGATCAGCAAAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATTCCTTCATCGGGGAAGATTTACATTGATCGATCAGCAAAAAA  749

seq1  ACTGGTTCCACCATCACCAAAATCTTCAAGTTTGAAATCAAAATCTTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTCCACCATCACCAAAATCTTCAAGTTTGAAATCAAAATCTTTTA  799

seq1  CCCTGCAGTCATTATTTTCTTTTCCAAAGTCTACATCACCTACCATTCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGTCATTATTTTCTTTTCCAAAGTCTACATCACCTACCATTCCA  849

seq1  AACCCACAGACACTATCTGTATTCCAGTATTCAGCAGATCCAATGAGCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACAGACACTATCTGTATTCCAGTATTCAGCAGATCCAATGAGCCC  899

seq1  TGATCCAAAACAACCATCAGTTTTCAACAAAGAAAGAGGTACCTTCTTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAAAACAACCATCAGTTTTCAACAAAGAAAGAGGTACCTTCTTGG  949

seq1  ACTCAATAACGAAAGGAGTTTTGCTGCGAAAAACTGAAGAGCATTGCATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATAACGAAAGGAGTTTTGCTGCGAAAAACTGAAGAGCATTGCATA  999

seq1  TTGAAAGCTCAAATAGAGATTTCAAAAAAATGAAGATAATTCAAGCCTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCTCAAATAGAGATTTCAAAAAAATGAAGATAATTCAAGCCTTA  1049

seq1  TGAATACTTCATGAATTC  1066
      ||||||||||||||||||
seq2  TGAATACTTCATGAATTC  1067


seq1: chrX_105531891_105533028
seq2: B6Ng01-225O03.g_72_1213

seq1  GAATTCAGAAAGTGAGCTTGGAGGTCAATTTTAAAGAAGAAATAAAAAGA  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGTGCGCTTGGAGGTCAATTTTAAAGAAGAAATAAAAAGA  50

seq1  AATGTTTTGATGGATTTAAAAAGTAGATTCTAAAACTCATAGGAAAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTGATGGATTTAAAAAGTAGATTCTAAAACTCATAGGAAAGGTT  100

seq1  AAAAATAATAATGCAGTAAATACTGTGGGAGATTTAAAAGGGAATACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATAATGCAGTAAATACTGTGGGAGATTTAAAAGGGAATACATT  150

seq1  CCCAAGAGAAATAGAAAACATAGAATACAAAAGACAAGGAAAATCAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGAAATAGAAAACATAGAATACAAAAGACAAGGAAAATCAACAA  200

seq1  GTAATTTTTATATTTTTTATATAATATAGTAGGCTTAAAAGCATTAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTTATATTTTTTATATAATATAGTAGGCTTAAAAGCATTAGTTT  250

seq1  CTCTTGGGATGAAGATCATCATGTATATTTTTTAAACTTCATAAAGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGATGAAGATCATCATGTATATTTTTTAAACTTCATAAAGTTAT  300

seq1  AATAAATATAATACCTATAACTCTTGGTGGCTAGAAAGAGTTTTTAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATAATACCTATAACTCTTGGTGGCTAGAAAGAGTTTTTAAATT  350

seq1  ATCACAAGGTCTGCTCCCAAAGAAACAGTTTGACTCTTGACAATTAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGGTCTGCTCCCAAAGAAACAGTTTGACTCTTGACAATTAGACA  400

seq1  TTTGTATGTGACTCTAATAACGAATGAAATATAGTAGGTCAGAATAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGTGACTCTAATAACGAATGAAATATAGTAGGTCAGAATAAATA  450

seq1  TATAATGTAGAGAGCTACTCATAAATCCATCAAGAGATATTTATATGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTAGAGAGCTACTCATAAATCCATCAAGAGATATTTATATGACC  500

seq1  TACTGTCTCTGAACAAGAATTTATGAATGTTATGGCTATACAACTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCTCTGAACAAGAATTTATGAATGTTATGGCTATACAACTTTATT  550

seq1  TTTTGAAATAAACATCAAGAGATATTTATTATAAAAAGGTTATAGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATAAACATCAAGAGATATTTATTATAAAAAGGTTATAGAAAAT  600

seq1  AATACTTGTGTGACTTTTTCTGGGGATACATAAAGAAATATCCACTACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGTGTGACTTTTTCTGGGGATACATAAAGAAATATCCACTACTC  650

seq1  TAGCTATGGGGCCCAACACACATTACAATATCAATTTTTTCAAAGTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGGGGCCCAACACACATTACAATATCAATTTTTTCAAAGTGTTA  700

seq1  ACTTGGTGATCCAGGAGTTTATTGGGCTTAGTTTCAGGAACATGGATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGATCCAGGAGTTTATTGGGCTTAGTTTCAGGAACATGGATGAC  750

seq1  ACAAACGTCTGCAAAACCAAAATACCCAGCCCAGTCTGCATGACAACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACGTCTGCAAAACCAAAATACCCAGCCCAGTCTGCATGACAACTCA  800

seq1  CAAAACTTGCACTTTTATCCCTGTAGAACTTGTATTAACAGGGAAGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTGCACTTTTATCCCTGTAGAACTTGTATTAACAGGGAAGAGTT  850

seq1  TCCACACCTCATATGAATAAATTTCAAGATTATTCAAGCTGTGCAGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCTCATATGAATAAATTTCAAGATTATTCAAGCTGTGCAGCCTG  900

seq1  AAAATCTTGGTTTACTCTATGCATCATCCTTTCTATTCAAAATATACTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTGGTTTACTCTATGCATCATCCTTTCTATTCAAAATATACTAT  950

seq1  ATCTTATGGACAAAGAAATGA-TTTTTACTTCTATTGATGCTAACAGAA-  998
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  ATCTTATGGACAAAGAAATGATTTTTTACTTCTATTGATGCTAACAGAAG  1000

seq1  GTAAATACAGTAGCCATA--GATATAGAATACACTAGTTGTTTGAAATTT  1046
      ||||||||||||||||||   ||||||||||||||||||||||| |||||
seq2  GTAAATACAGTAGCCATAAGAATATAGAATACACTAGTTGTTTG-AATTT  1049

seq1  CATTTTTCATTCATTAATTTAGCCCTCCATACAGTAAGCAGCTGTAAGGA  1096
      ||||||||||||||||| ||||||||||||||||| ||||||||||  ||
seq2  CATTTTTCATTCATTAA-TTAGCCCTCCATACAGT-AGCAGCTGTA--GA  1095

seq1  TGAACACAAAATCTAATGTTTAAGAGTACA-TGA-----GTTGTCTTT  1138
      ||||||| ||||||||||||||||| |||| |||     |||||||||
seq2  TGAACAC-AAATCTAATGTTTAAGAATACAGTGATGGTCGTTGTCTTT  1142


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