BAC Information

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BAC

Clone NameB6Ng01-228B07
ChromosomeX (Build37)
Map Location 100,548,338 - 100,650,508
singlet/doubletdoublet
Overlap geneChic1, Tsx, Tsix
Upstream geneHdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052
Downstream geneXist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228B07.bB6Ng01-228B07.g
ACCGA041582GA041583
length1,169642
definitionB6Ng01-228B07.b B6Ng01-228B07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,548,338 - 100,549,510)(100,649,875 - 100,650,508)
sequence
gaattccacttatacacatctattcaagaaaacaattaaatcatgtttta
cagagacatatgaatgtccacaacagtatttacataatatataaatgatg
aaaggaatccaaatgtcattaccaggtgagtggataagaaaaatatgatc
tactgcaacaataaaatactatttatccattaaaaggaatgaagctctaa
taaatgacacaatatgaagaacctagaggacacactaagcaaaaggtgtc
agaagcaatgtattttataatatagtttatttgaaaagccctgctaaaga
aatactaactcataacacagactaattgttgcataggatcggggatgaga
attggggcaggggctattgaaaaacgaggcaatggaaatattctaaaatt
agtttctgatgatgactgcaccattctgtaaattgactaatatcactaac
atgcatactttaacaaacaacactatcttttaaaaccctctcagaccatt
aaacctgagactttgtgcctcagtcagccatctattagccgagagaatga
ccctcatgaccttcttagcacgttaggcaaacaaaacctttttccacctg
ctttcctccctatccattccccaatttactatcctgaaagctaacttatc
atttaaaaatcatcatgcttcatgtagtcactgacagtggatacacaaaa
cgtgttttcctgtgctttcccaatctaagactcctcctgtcgttcagtgc
aactgattgcctttgtaaccacatatgcttcttcagcacagtgtacatgc
agggaaacagatgagctgatctgactgtgcttgcacacttggccaagtgt
aacacgcctctaaactacttttgtcctttgacttctgactaaatgtcagc
ggcctctttccaattaatttagtttgttttactttgtttgagatagtgtc
tcagtgtcctagactgacctgcttattatatagccaaggatcaacttgaa
ctctgatcttcttgcttcctcctcctgcttctggaatacaattgttgcac
caccattccagttattgcttgggtctggaagatagaacctaggattctct
attgatagcagcactctaccactgaacttacatttcggacctctctactt
gcagaccattagtagcatt
gaattctgtagacaagggagggctttctaggtttaaaattaatttactgg
tccctaaaaaacaaacaaacaaaggggctggagaaatggctcattggtta
agaatgctggctgctcttccggaccggaccgtggttgtggttcaattccc
agcacccacatggcagctcacaactgtctgtaagtccagttccagggtat
ctgacaccctcatacagacttacattcaggcaaaacaccaatgcactaaa
taaatacatacatacacaccgaacaacaaaagactacaggtctgaaaaaa
gccagtaggcattgcaagcctggaggtggtggaccatggatcagaattca
aggctgggctgggctacatgagagcctttaaaagtaagtaaataaacaag
gccttattctctattcccactagggaaatgaagcaaactataattggata
tccctcgcatctacctacttggaatagctatctagaacctaggaaccagc
tggtgttggaggcaagggcctgtaaccgcggcacttgggagattttgagc
aagaagatgaagaattgggtctatcctgggcaatgtcatgagactctgtc
tcatataaaaaaagaaagaaagaggagatagagatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_100548338_100549510
seq2: B6Ng01-228B07.b_31_1199

seq1  GAATTCCACTTATACACATCTATTCAAGAAAACAATTAAATCATGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTATACACATCTATTCAAGAAAACAATTAAATCATGTTTTA  50

seq1  CAGAGACATATGAATGTCCACAACAGTATTTACATAATATATAAATGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACATATGAATGTCCACAACAGTATTTACATAATATATAAATGATG  100

seq1  AAAGGAATCCAAATGTCATTACCAGGTGAGTGGATAAGAAAAATATGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATCCAAATGTCATTACCAGGTGAGTGGATAAGAAAAATATGATC  150

seq1  TACTGCAACAATAAAATACTATTTATCCATTAAAAGGAATGAAGCTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAACAATAAAATACTATTTATCCATTAAAAGGAATGAAGCTCTAA  200

seq1  TAAATGACACAATATGAAGAACCTAGAGGACACACTAAGCAAAAGGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACACAATATGAAGAACCTAGAGGACACACTAAGCAAAAGGTGTC  250

seq1  AGAAGCAATGTATTTTATAATATAGTTTATTTGAAAAGCCCTGCTAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAATGTATTTTATAATATAGTTTATTTGAAAAGCCCTGCTAAAGA  300

seq1  AATACTAACTCATAACACAGACTAATTGTTGCATAGGATCGGGGATGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAACTCATAACACAGACTAATTGTTGCATAGGATCGGGGATGAGA  350

seq1  ATTGGGGCAGGGGCTATTGAAAAACGAGGCAATGGAAATATTCTAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGCAGGGGCTATTGAAAAACGAGGCAATGGAAATATTCTAAAATT  400

seq1  AGTTTCTGATGATGACTGCACCATTCTGTAAATTGACTAATATCACTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGATGATGACTGCACCATTCTGTAAATTGACTAATATCACTAAC  450

seq1  ATGCATACTTTAACAAACAACACTATCTTTTAAAACCCTCTCAGACCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACTTTAACAAACAACACTATCTTTTAAAACCCTCTCAGACCATT  500

seq1  AAACCTGAGACTTTGTGCCTCAGTCAGCCATCTATTAGCCGAGAGAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGAGACTTTGTGCCTCAGTCAGCCATCTATTAGCCGAGAGAATGA  550

seq1  CCCTCATGACCTTCTTAGCACGTTAGGCAAACAAAACCTTTTTCCACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATGACCTTCTTAGCACGTTAGGCAAACAAAACCTTTTTCCACCTG  600

seq1  CTTTCCTCCCTATCCATTCCCCAATTTACTATCCTGAAAGCTAACTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCCCTATCCATTCCCCAATTTACTATCCTGAAAGCTAACTTATC  650

seq1  ATTTAAAAATCATCATGCTTCATGTAGTCACTGACAGTGGATACACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATCATCATGCTTCATGTAGTCACTGACAGTGGATACACAAAA  700

seq1  CGTGTTTTCCTGTGCTTTCCCAATCTAAGACTCCTCCTGTCGTTCAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTTCCTGTGCTTTCCCAATCTAAGACTCCTCCTGTCGTTCAGTGC  750

seq1  AACTGATTGCCTTTGTAACCACATATGCTTCTTCAGCACAGTGTACATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTGCCTTTGTAACCACATATGCTTCTTCAGCACAGTGTACATGC  800

seq1  AGGGAAACAGATGAGCTGATCTGACTGTGCTTGCACACTTGGCCAAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACAGATGAGCTGATCTGACTGTGCTTGCACACTTGGCCAAGTGT  850

seq1  AACACGCCTCTAAACTAC-TTTGTCCTTTTGACTTCTGACTAAATGTCAG  899
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  AACACGCCTCTAAACTACTTTTGTCC-TTTGACTTCTGACTAAATGTCAG  899

seq1  CGGCCTCTTTCCAAATTATTTAGTTTGTTTTACTTTGTTTGAGATAGTGT  949
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  CGGCCTCTTTCCAATTAATTTAGTTTGTTTTACTTTGTTTGAGATAGTGT  949

seq1  CTCAGTGTCCTAGACTGACCTGCTTACTATATAGCCAAGGATCAACTTGA  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCAGTGTCCTAGACTGACCTGCTTATTATATAGCCAAGGATCAACTTGA  999

seq1  ACTTCTGATCTTCCTGCCTCCTCCTCCCTGCTTCTGGGATTACAAATG-T  1048
      || |||||||||| ||| ||||||| ||||||||| ||| ||||| || |
seq2  AC-TCTGATCTTCTTGCTTCCTCCT-CCTGCTTCT-GGAATACAATTGTT  1046

seq1  GCACCACCATTCCCAGTTTATGCT--GTGCTGGAGATTAGAACTAGGGAT  1096
      ||||||||||| ||||||  ||||  |  |||||   ||||||   ||||
seq2  GCACCACCATT-CCAGTTATTGCTTGGGTCTGGAAGATAGAACCTAGGAT  1095

seq1  TTCCTACATGATAAGCAAGCACTCTACCAACTGAAC-TACATTTCGGGAC  1145
      |  |||  |||| ||| ||||||||||| ||||||| ||||||||||  |
seq2  TCTCTA-TTGAT-AGC-AGCACTCTACC-ACTGAACTTACATTTCGGACC  1141

seq1  TCTCTACTTTGCAG--CATATAGTAGCATT  1173
      ||||||| ||||||  ||| ||||||||||
seq2  TCTCTAC-TTGCAGACCAT-TAGTAGCATT  1169

seq1: chrX_100649875_100650508
seq2: B6Ng01-228B07.g_71_704 (reverse)

seq1  TCTCTCTCTCCTCTTTCTTTCTTTTTTTTTTTGAGACAGAGTCTCATGAC  50
      ||||| |||||||||||||||||||||| | |||||||||||||||||||
seq2  TCTCTATCTCCTCTTTCTTTCTTTTTTTATATGAGACAGAGTCTCATGAC  50

seq1  ATTGCCCAGGATAGACCCAATTCTTCATCTTCTTGCTCTAAATCTCCCAA  100
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTGCCCAGGATAGACCCAATTCTTCATCTTCTTGCTCAAAATCTCCCAA  100

seq1  GTGCCGCGGTTACAGGCCCTTGCCTCCAACACCAGCTGGTTCCTAGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGCGGTTACAGGCCCTTGCCTCCAACACCAGCTGGTTCCTAGGTTC  150

seq1  TAGATAGCTATTCCAAGTAGGTAGATGCGAGGGATATCCAATTATAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGCTATTCCAAGTAGGTAGATGCGAGGGATATCCAATTATAGTTT  200

seq1  GCTTCATTTCCCTAGTGGGAATAGAGAATAAGGCCTTGTTTATTTACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTTCCCTAGTGGGAATAGAGAATAAGGCCTTGTTTATTTACTTA  250

seq1  CTTTTAAAGGCTCTCATGTAGCCCAGCCCAGCCTTGAATTCTGATCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAGGCTCTCATGTAGCCCAGCCCAGCCTTGAATTCTGATCCATG  300

seq1  GTCCACCACCTCCAGGCTTGCAATGCCTACTGGCTTTTTTCAGACCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCACCTCCAGGCTTGCAATGCCTACTGGCTTTTTTCAGACCTGTA  350

seq1  GTCTTTTGTTGTTCGGTGTGTATGTATGTATTTATTTAGTGCATTGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGTTGTTCGGTGTGTATGTATGTATTTATTTAGTGCATTGGTGT  400

seq1  TTTGCCTGAATGTAAGTCTGTATGAGGGTGTCAGATACCCTGGAACTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGAATGTAAGTCTGTATGAGGGTGTCAGATACCCTGGAACTGGA  450

seq1  CTTACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTGAACCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTGAACCACAA  500

seq1  CCACGGTCCGGTCCGGAAGAGCAGCCAGCATTCTTAACCAATGAGCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTCCGGTCCGGAAGAGCAGCCAGCATTCTTAACCAATGAGCCATT  550

seq1  TCTCCAGCCCCTTTGTTTGTTTGTTTTTTAGGGACCAGTAAATTAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCCCCTTTGTTTGTTTGTTTTTTAGGGACCAGTAAATTAATTTT  600

seq1  AAACCTAGAAAGCCCTCCCTTGTCTACAGAATTC  634
      ||||||||||||||||||||||||||||||||||
seq2  AAACCTAGAAAGCCCTCCCTTGTCTACAGAATTC  634