BAC Information

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BAC

Clone NameB6Ng01-228P11
ChromosomeX (Build37)
Map Location 16,578,094 - 16,661,793
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph
Downstream geneLOC100043063, Efhc2, Fundc1, EG278181, EG668994, EG436196, EG331391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228P11.bB6Ng01-228P11.g
ACCGA042240GA042241
length1,2031,110
definitionB6Ng01-228P11.b B6Ng01-228P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,578,094 - 16,579,286)(16,660,683 - 16,661,793)
sequence
gaattccatcccagaagtgaaaggcttaattctgaaggacacattccaac
accccaccccaccccacccccacgcacacaccagcccttagccttcagga
ttgtgaagtacttgtaagtataacgcttccgagttgttcaataagtgtct
ctgatttgtgatctatatttaaactgcagaactctggtatctttcttttt
ccttgatgattttgagacagacttttgctctataggttaaactggcctga
aacttgtgctaatcctcctgtgtaagccatatcagtcatcatacctggat
agaattctaagtctgtttaggaggggctgtatttgcccatttgttttgtg
ccatcatggagcttacactagagctttgtgagatatagctcagtggtaca
gaaccttgccctgaactttaatttctagaaaggtccataatcatagcttc
agggatagtctgggtgttagtttttcactggcctctcaataggtgataaa
tgatcttaattttatgttcccattcttttggccactttccccagcactat
atgtcattccctttcctcaaacttaaagattaaaactgctcactataatg
cctctaatcctggccctcctggatttagaatggcatgattgctccatatt
aaagaaaccttattaaagcttagaagtagaactgtctgtgctcatagcaa
taaacttctgagtacagtatgcaattgccttcatgaaagtaaaataatag
gatcagattctttagcaagtcttatttcttgatttcttcctgtaccattt
cactgtaaggatgagctcttatacacttcatggaccaaagtctcatttct
tagtggtgaaatgccatattggtaacctataatgaaactatatctcccta
tgcttatgcccttctgtaaaaccatcccacaaagactaagagtttatctg
aaatgctttggccaataagatccaagtatatacattgcaatcagagacct
aaatgcctcctcactgaaaatatttcttttagaatataagggaagccatt
gccatgcttgtaaggaagtttagcattcatattgaggtctgaagaaacca
cattctttttctcttctattgcccttgacctgtagaatgttatatgactt
tcctgccttgaattcggcctaacctcccaaataatggaacagtaaccatg
ttt

gaattcccatagaattacgtaagttgggaatctgtgtacatgcatgtata
caacttgcagtattttatgaggtcaatcccactattgagatgaccataaa
agtctctcagtcacattgttattctttctgaggggtcatgttcttaggct
agaattccacatggagtaaatgggaaactgtgtttgtctatatgtatgaa
tgaatatgcgcctgcacatcacctcaccatctgcatgaaaataaactcca
tggctatgatttggctttgtttcattcttcccaggattttcttctttcct
tcatggtttagtttgattgaaatagggtaaccccatttatggatggttct
catcaactctgaacaaatgagctctttaaatttttgtgaaaatgcttgag
aattccattcaggaacttcctgaacaatttggaattggctgtagcacctt
tctgtcccctgcctgctaatgcaggtgcttttatctttcttaaggactat
ttggcggaaagctttggtcattggagttttcaatgtaacttttaaacctg
caaagaataaatcctacatgtgcaagagggaggagcagcagcaaactagc
tcgtggaaactttctctttccccctccagccattggttgggtgccaacta
tagttagcactggcagaacataccagtgttttggtgaagggcatttcttg
gactgtgttaagaacattggtggtcttcctctggttcgatctataggggc
tactgccagcacctctaacttgaaagtgcttggacataaaggtgaaagca
gattctacacctcagactcagggatgagtagagacacagcttttcttgat
gacatcgttttgtaaccgatttgtccaacagtttcaaaataagacaatta
aaaggaccaaattattggtggaaagcagaagaagtgatttattttgatga
atcccacattgggaggaggcacaaagagatccagctactctgccaaggtc
tggcctttggggtcgtgaagtaagaccgtagttaaatagaggccaagggc
atgccaccagaaatcaggatagccatctacaattacccctttttgtctgg
gcttccatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_16578094_16579286
seq2: B6Ng01-228P11.b_46_1248

seq1  GAATTCCATCCCAGAAGTGAAAGGCTTAATTCTGAAGGACACATTCCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCAGAAGTGAAAGGCTTAATTCTGAAGGACACATTCCAAC  50

seq1  ACCCCACCCCACCCCACCCCCACGCACACACCAGCCCTTAGCCTTCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCCCACCCCACCCCCACGCACACACCAGCCCTTAGCCTTCAGGA  100

seq1  TTGTGAAGTACTTGTAAGTATAACGCTTCCGAGTTGTTCAATAAGTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAGTACTTGTAAGTATAACGCTTCCGAGTTGTTCAATAAGTGTCT  150

seq1  CTGATTTGTGATCTATATTTAAACTGCAGAACTCTGGTATCTTTCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGTGATCTATATTTAAACTGCAGAACTCTGGTATCTTTCTTTTT  200

seq1  CCTTGATGATTTTGAGACAGACTTTTGCTCTATAGGTTAAACTGGCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATGATTTTGAGACAGACTTTTGCTCTATAGGTTAAACTGGCCTGA  250

seq1  AACTTGTGCTAATCCTCCTGTGTAAGCCATATCAGTCATCATACCTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGCTAATCCTCCTGTGTAAGCCATATCAGTCATCATACCTGGAT  300

seq1  AGAATTCTAAGTCTGTTTAGGAGGGGCTGTATTTGCCCATTTGTTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTAAGTCTGTTTAGGAGGGGCTGTATTTGCCCATTTGTTTTGTG  350

seq1  CCATCATGGAGCTTACACTAGAGCTTTGTGAGATATAGCTCAGTGGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATGGAGCTTACACTAGAGCTTTGTGAGATATAGCTCAGTGGTACA  400

seq1  GAACCTTGCCCTGAACTTTAATTTCTAGAAAGGTCCATAATCATAGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTGCCCTGAACTTTAATTTCTAGAAAGGTCCATAATCATAGCTTC  450

seq1  AGGGATAGTCTGGGTGTTAGTTTTTCACTGGCCTCTCAATAGGTGATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAGTCTGGGTGTTAGTTTTTCACTGGCCTCTCAATAGGTGATAAA  500

seq1  TGATCTTAATTTTATGTTCCCATTCTTTTGGCCACTTTCCCCAGCACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTAATTTTATGTTCCCATTCTTTTGGCCACTTTCCCCAGCACTAT  550

seq1  ATGTCATTCCCTTTCCTCAAACTTAAAGATTAAAACTGCTCACTATAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTCCCTTTCCTCAAACTTAAAGATTAAAACTGCTCACTATAATG  600

seq1  CCTCTAATCCTGGCCCTCCTGGATTTAGAATGGCATGATTGCTCCATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAATCCTGGCCCTCCTGGATTTAGAATGGCATGATTGCTCCATATT  650

seq1  AAAGAAACCTTATTAAAGCTTAGAAGTAGAACTGTCTGTGCTCATAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCTTATTAAAGCTTAGAAGTAGAACTGTCTGTGCTCATAGCAA  700

seq1  TAAACTTCTGAGTACAGTATGCAATTGCCTTCATGAAAGTAAAATAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCTGAGTACAGTATGCAATTGCCTTCATGAAAGTAAAATAATAG  750

seq1  GATCAGATTCTTTAGCAAGTCTTATTTCTTGATTTCTTCCTGTACCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGATTCTTTAGCAAGTCTTATTTCTTGATTTCTTCCTGTACCATTT  800

seq1  CACTGTAAGGATGAGCTCTTATACACTTCATGGACCAAAGTCTCATTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAAGGATGAGCTCTTATACACTTCATGGACCAAAGTCTCATTTCT  850

seq1  TAGTGGTGAAATGCCATATTGGTAACCTATAATG-AACTATATCTCCCTA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAGTGGTGAAATGCCATATTGGTAACCTATAATGAAACTATATCTCCCTA  900

seq1  TGCTTATGCCCTTCTGTAAAACCATCCCACAAAGACTAAGAGTTTATCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGCCCTTCTGTAAAACCATCCCACAAAGACTAAGAGTTTATCTG  950

seq1  AAATGCTTTGGCCAATAAGATCCAAGTATAATACATTGCAATCAGAGACC  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAATGCTTTGGCCAATAAGATCCAAGTAT-ATACATTGCAATCAGAGACC  999

seq1  TAAATGCCT-CTCACTGAAAATA-TTCTTTTAGAATATAAGGGAAGCCAT  1047
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TAAATGCCTCCTCACTGAAAATATTTCTTTTAGAATATAAGGGAAGCCAT  1049

seq1  TGCCATGC-TGTAAGGAAG-TTAGCATTCATTAATGAAGTCTG-AGAAAC  1094
      |||||||| |||||||||| |||||||||| || ||| ||||| ||||||
seq2  TGCCATGCTTGTAAGGAAGTTTAGCATTCA-TATTGAGGTCTGAAGAAAC  1098

seq1  CACATTC-TTTTCTC-TCTA-TGCCCTTGA-CTGTAG-ATGTTATATGAC  1139
      ||||||| ||||||| |||| ||||||||| |||||| ||||||||||||
seq2  CACATTCTTTTTCTCTTCTATTGCCCTTGACCTGTAGAATGTTATATGAC  1148

seq1  TTT-CTG-CTTGAATTCTGCCTTACCTTCCCAAAATAATGG-ACAGTAAC  1186
      ||| ||| ||||||||| |||| ||||  || ||||||||| ||||||||
seq2  TTTCCTGCCTTGAATTCGGCCTAACCT--CCCAAATAATGGAACAGTAAC  1196

seq1  CATGTTT  1193
      |||||||
seq2  CATGTTT  1203


seq1: chrX_16660683_16661793
seq2: B6Ng01-228P11.g_71_1180 (reverse)

seq1  GGATGGAAGCCCAGACAAAAAGGGGTTAATGGTAGATGCCTTAATCCTTG  50
      ||||||||||||||||||||||||| |||| ||||||| ||  |||| ||
seq2  GGATGGAAGCCCAGACAAAAAGGGG-TAATTGTAGATGGCT--ATCC-TG  46

seq1  ATTTTCTGT-GCATGCCCTTGGCCCTCTATTTAAACTTCGGTCTTACTTC  99
      ||||   || |||||||||||| ||||||||| |||| ||||||||||||
seq2  ATTTCTGGTGGCATGCCCTTGG-CCTCTATTT-AACTACGGTCTTACTTC  94

seq1  ACGACCCCAAA-GCCAGA-CTTGGCAGAGTAGCTGGATCTCTTTGTGCCT  147
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  ACGACCCCAAAGGCCAGACCTTGGCAGAGTAGCTGGATCTCTTTGTGCCT  144

seq1  CTTCCCAATGT-GGATTCATC-AAATAAATCACTTCTTTCTGCTTTCCAC  195
      | ||||||||| ||||||||| |||||||||||||| |||||||||||||
seq2  CCTCCCAATGTGGGATTCATCAAAATAAATCACTTC-TTCTGCTTTCCAC  193

seq1  CAATAATTTGGTCCTTTTAATTGTCTTATTTTG-AACTGTTGGACAAATC  244
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAATAATTTGGTCCTTTTAATTGTCTTATTTTGAAACTGTTGGACAAATC  243

seq1  GGTTACAAAACGATGTCATCAAGAATAGCTGTGTCTCTACTCATCCCTGA  294
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTTACAAAACGATGTCATCAAGAAAAGCTGTGTCTCTACTCATCCCTGA  293

seq1  GTCTGAGGTGTAGAATCTGCTTTCACCTTTATGTCCAAGCACTTTCAAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGGTGTAGAATCTGCTTTCACCTTTATGTCCAAGCACTTTCAAGT  343

seq1  TAGAGGTGCTGGCAGTAGCCCCTATAGATCGAACCAGAGGAAGACCACCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTGCTGGCAGTAGCCCCTATAGATCGAACCAGAGGAAGACCACCA  393

seq1  ATGTTCTTAACACAGTCCAAGAAATGCCCTTCACCAAAACACTGGTATGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTAACACAGTCCAAGAAATGCCCTTCACCAAAACACTGGTATGT  443

seq1  TCTGCCAGTGCTAACTATAGTTGGCACCCAACCAATGGCTGGAGGGGGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGTGCTAACTATAGTTGGCACCCAACCAATGGCTGGAGGGGGAA  493

seq1  AGAGAAAGTTTCCACGAGCTAGTTTGCTGCTGCTCCTCCCTCTTGCACAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGTTTCCACGAGCTAGTTTGCTGCTGCTCCTCCCTCTTGCACAT  543

seq1  GTAGGATTTATTCTTTGCAGGTTTAAAAGTTACATTGAAAACTCCAATGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATTTATTCTTTGCAGGTTTAAAAGTTACATTGAAAACTCCAATGA  593

seq1  CCAAAGCTTTCCGCCAAATAGTCCTTAAGAAAGATAAAAGCACCTGCATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTTTCCGCCAAATAGTCCTTAAGAAAGATAAAAGCACCTGCATT  643

seq1  AGCAGGCAGGGGACAGAAAGGTGCTACAGCCAATTCCAAATTGTTCAGGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAGGGGACAGAAAGGTGCTACAGCCAATTCCAAATTGTTCAGGA  693

seq1  AGTTCCTGAATGGAATTCTCAAGCATTTTCACAAAAATTTAAAGAGCTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGAATGGAATTCTCAAGCATTTTCACAAAAATTTAAAGAGCTCA  743

seq1  TTTGTTCAGAGTTGATGAGAACCATCCATAAATGGGGTTACCCTATTTCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAGAGTTGATGAGAACCATCCATAAATGGGGTTACCCTATTTCA  793

seq1  ATCAAACTAAACCATGAAGGAAAGAAGAAAATCCTGGGAAGAATGAAACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTAAACCATGAAGGAAAGAAGAAAATCCTGGGAAGAATGAAACA  843

seq1  AAGCCAAATCATAGCCATGGAGTTTATTTTCATGCAGATGGTGAGGTGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAATCATAGCCATGGAGTTTATTTTCATGCAGATGGTGAGGTGAT  893

seq1  GTGCAGGCGCATATTCATTCATACATATAGACAAACACAGTTTCCCATTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGCGCATATTCATTCATACATATAGACAAACACAGTTTCCCATTT  943

seq1  ACTCCATGTGGAATTCTAGCCTAAGAACATGACCCCTCAGAAAGAATAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGTGGAATTCTAGCCTAAGAACATGACCCCTCAGAAAGAATAAC  993

seq1  AATGTGACTGAGAGACTTTTATGGTCATCTCAATAGTGGGATTGACCTCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACTGAGAGACTTTTATGGTCATCTCAATAGTGGGATTGACCTCA  1043

seq1  TAAAATACTGCAAGTTGTATACATGCATGTACACAGATTCCCAACTTACG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACTGCAAGTTGTATACATGCATGTACACAGATTCCCAACTTACG  1093

seq1  TAATTCTATGGGAATTC  1111
      |||||||||||||||||
seq2  TAATTCTATGGGAATTC  1110


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