BAC Information

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BAC

Clone NameB6Ng01-230A11
ChromosomeX (Build37)13 (Build37)
Map Location 126,789,668 - 126,789,81615,184,352 - 15,185,564
singlet/doubletsingletsinglet
Overlap geneDiap2
Upstream geneLOC100040562, LOC100040570, LOC669120
Downstream geneLOC100040092, LOC665773, LOC665799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230A11.bB6Ng01-230A11.g
ACCGA043002GA043003
length9561,188
definitionB6Ng01-230A11.b B6Ng01-230A11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(126,789,668 - 126,789,816)(15,184,352 - 15,185,564)
sequence
gaattctcatcttgatgttatagctgcaatgcctgcttctacataatggt
gatgaactcttttacccctggaactgtacgctcagataaatgcacctgta
aaatatctgactataattatttgctctttgagaaatgttgaagacttgca
tctttggactagaaaaccagttgaacattataagaggctgtaggctgtac
aagcaggagcttggaagacagtagtgccaagaactctgtggactgtaaag
ttcaagaggcttcagaaaggaccagtattggcaactgagctagagtttat
ttctgtgatattttaacactccccgcccacatccaaaaatgtagttaccc
tatgcccacagcctaataacttgctcaaggctaaatttatattttaaatt
ttaaattgaaaaaataacttcctaatggagaagtttcaaaacagcttaat
attgactttgtcctgtggtaattactaatcatacttgtgcaggtcaacaa
taaaaaagaataaaaaaggcagaataaaatacaaatagtacagtttggat
agaaaaagaacactaacaaacaatgttacagtgaaagtttctgctgaaag
agaggctgaaattggtttttttttttaaattttttcatttaattttattt
taattaggtattttcttcatttacatttccaatgctaccccaaaagtccc
ccataccccccccacccacatactcccacttcttggccctggcattaccc
tatactgaggcatataaagtttgcaagaccaaggggcctctctttccact
gatggctgactaggccatcttctgatacatatgcagctagagacacgagc
ttcggggggtattgattcatattgttgttccacctataggggttgcagac
ccctttaggctccttgggtacttctctagctcctccatcggggaccctgg
tgatcc
gaattcttgttccagaaaaccatgattgattctaaaaaaaaaaaaaaagg
tttgcttatatctgtacaaggtagtatggattttgaaaccaagacttgaa
aaaataaagaaatgaatgactgccaatttttaagtaaaaagaaggggttg
acagctaaagaagctgagtggcactttagagcaattactaaggtattaag
acaaaattcagagtttaattttgtgttgggagtattttaaatgtaaactt
accccaatttaaaatttcctaagtatggagcctcaaatgaaatgctatct
tggctttttaaattgacgagagatgaccaactccttatataaatgtagat
gtataaatatgtagagatagatacagaaaccagtacacaactcttacccc
ctagaagccatcacctattcatagctcttcatctaggatgggaatttgtg
aacctcttctcccacattgcaaaaattctacttactgttctcatatggat
ttttctgcagatgatcacagctgctgttcataggtatgtgatcctgtcat
gtccacaagactctgttttgctccaagtctccctaacctctagcttttac
actatttctgccctccttttccaagatggagagtagaaaggagcatgtgt
gacatcaatgccccatatatgactgagaagtcctgtgagagtctttactc
tttgactagctgtaagtttctctgatgtccattgctcaccgcacaaagaa
cttcaccagtgaggtctgaaagctagactgtgggtggacagagaacagat
tagagtgaaaagtagacttgaaaccagttctttttttattaattaattaa
ttaattaatttactttacatcccgattgcacttcccttccctccactcct
ctcagtccttcctcttcacttcacttcccccatatctaccttcctccctt
ctcctcaggaaagggaaggctccaaatggctatcaccagccatggcagtg
cagtagattagatggagtctattctattgagctagacagactgcctactt
gaaacaactcttgatgggaaaaattaaacgggtatttagtacgaatagac
cacacaattcagagaaaaaaatcaatctgatatcgccacttaatgcgatc
atctagtcaaagcaactatggaattaattcaccgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_126789668_126789816
seq2: B6Ng01-230A11.b_694_829

seq1  TTTTAAATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAG  50
       ||| |||||||||||||||||||||||||||| ||||||| ||||||||
seq2  -TTTTAATTAGGTATTTTCTTCATTTACATTTCCAATGCTACCCCAAAAG  49

seq1  TCCCCCATACTCTCCCACACACACACTCCCCTCCCCCACTCCCACTTCTT  100
      |||||||||| | ||| ||| ||||            |||||||||||||
seq2  TCCCCCATAC-CCCCCCCACCCACA-----------TACTCCCACTTCTT  87

seq1  GGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAATACCAAG  149
      |||||||| ||| |||| ||||| |||||||||||||||||| ||||||
seq2  GGCCCTGGCATTACCCTATACTGAGGCATATAAAGTTTGCAAGACCAAG  136

seq1: chr13_15184352_15185564
seq2: B6Ng01-230A11.g_68_1255

seq1  GAATTCTTGTTCCAGAAAACCATGATTGATTCTAAAAAAAAAAAAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTCCAGAAAACCATGATTGATTCTAAAAAAAAAAAAAAAGG  50

seq1  TTTGCTTATATCTGTACAAGGTAGTATGGATTTTGAAACCAAGACTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTATATCTGTACAAGGTAGTATGGATTTTGAAACCAAGACTTGAA  100

seq1  AAAATAAAGAAATGAATGACTGCCAATTTTTAAGTAAAAAGAAGGGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGAAATGAATGACTGCCAATTTTTAAGTAAAAAGAAGGGGTTG  150

seq1  ACAGCTAAAGAAGCTGAGTGGCACTTTAGAGCAATTACTAAGGTATTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAAAGAAGCTGAGTGGCACTTTAGAGCAATTACTAAGGTATTAAG  200

seq1  ACAAAATTCAGAGTTTAATTTTGTGTTGGGAGTATTTTAAATGTAAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTCAGAGTTTAATTTTGTGTTGGGAGTATTTTAAATGTAAACTT  250

seq1  ACCCCAATTTAAAATTTCCTAAGTATGGAGCCTCAAATGAAATGCTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAATTTAAAATTTCCTAAGTATGGAGCCTCAAATGAAATGCTATCT  300

seq1  TGGCTTTTTAAATTGACGAGAGATGACCAACTCCTTATATAAATGTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTTAAATTGACGAGAGATGACCAACTCCTTATATAAATGTAGAT  350

seq1  GTATAAATATGTAGAGATAGATACAGAAACCAGTACACAACTCTTACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATATGTAGAGATAGATACAGAAACCAGTACACAACTCTTACCCC  400

seq1  CTAGAAGCCATCACCTATTCATAGCTCTTCATCTAGGATGGGAATTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGCCATCACCTATTCATAGCTCTTCATCTAGGATGGGAATTTGTG  450

seq1  AACCTCTTCTCCCACATTGCAAAAATTCTACTTACTGTTCTCATATGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTTCTCCCACATTGCAAAAATTCTACTTACTGTTCTCATATGGAT  500

seq1  TTTTCTGCAGATGATCACAGCTGCTGTTCATAGGTATGTGATCCTGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCAGATGATCACAGCTGCTGTTCATAGGTATGTGATCCTGTCAT  550

seq1  GTCCACAAGACTCTGTTTTGCTCCAAGTCTCCCTAACCTCTAGCTTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAAGACTCTGTTTTGCTCCAAGTCTCCCTAACCTCTAGCTTTTAC  600

seq1  ACTATTTCTGCCCTCCTTTTCCAAGATGGAGAGTAGAAAGGAGCATGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCTGCCCTCCTTTTCCAAGATGGAGAGTAGAAAGGAGCATGTGT  650

seq1  GACATCAATGCCCCATATATGACTGAGAAGTCCTGTGAGAGTCTTTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAATGCCCCATATATGACTGAGAAGTCCTGTGAGAGTCTTTACTC  700

seq1  TTTGACTAGCTGTAAGTTTCTCTGATGTCCATTGCTCACCGCACAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTAGCTGTAAGTTTCTCTGATGTCCATTGCTCACCGCACAAAGAA  750

seq1  CTTCACCAGTGAGGTCTGAAAGCTAGACTGTGGGTGGACAGAGAACAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCAGTGAGGTCTGAAAGCTAGACTGTGGGTGGACAGAGAACAGAT  800

seq1  TAGAGTGAAAAGTAGACTTGAAACCAGTTCTTTTTTTATTAATTAATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGAAAAGTAGACTTGAAACCAGTTCTTTTTTTATTAATTAATTAA  850

seq1  TTAATTAATTTACTTTACATCCCGATTGCACTTCCCTTCCCTCCACTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATTTACTTTACATCCCGATTGCACTTCCCTTCCCTCCACTCCT  900

seq1  CTCAGTCCTTCCTCTTCACTTCACTTCCCCCATATCTACCTTCCTCCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCTTCCTCTTCACTTCACTTCCCCCATATCTACCTTCCTCCCTT  950

seq1  CTCCTCAGGAAAGGGAAGGCTCCAAATGGCTATCAACCAGCCATGGCAGT  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  CTCCTCAGGAAAGGGAAGGCTCCAAATGGCTATC-ACCAGCCATGGCAG-  998

seq1  TGCAGTAAGATTAGAT-GAGTCTTATTCTATTGAGGCTAGACAAGACTGC  1049
      |||||| ||||||||| ||||| ||||||||||| ||||||| |||||||
seq2  TGCAGT-AGATTAGATGGAGTC-TATTCTATTGA-GCTAGAC-AGACTGC  1044

seq1  CTACTTGAAACCAACTCTTGATGGGAAAAATAAAAAGGGTTATTTAGTAC  1099
      |||||||||| |||||||||||||||||||| ||| ||| ||||||||||
seq2  CTACTTGAAA-CAACTCTTGATGGGAAAAATTAAACGGG-TATTTAGTAC  1092

seq1  CAGATAAGAACCAACACATCAGGAGAAAAAAATCAATTCTAAATATTCGC  1149
        ||  ||| |  |||  ||| |||||||||||||| |||  ||| ||||
seq2  --GAATAGACCACACAATTCA-GAGAAAAAAATCAA-TCT-GATA-TCGC  1136

seq1  ACACTAAATAGCAGTCCATCTAAGTTTACAAAGCAAACACTAATGGATTT  1199
       |||| ||| || |  ||||| |||   |||||||   ||| |||||  |
seq2  -CACTTAAT-GC-GATCATCT-AGT---CAAAGCA---ACT-ATGGA-AT  1174

seq1  TAAATCACCGAGTA  1213
      ||| ||||||||||
seq2  TAATTCACCGAGTA  1188