MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-230B21
Chromosome	X (Build37)
Map Location	69,018,017 - 69,190,366
singlet/doublet	doublet
Overlap gene	LOC654357, 2610030H06Rik, Gm1141
Upstream gene	LOC666993, Ppia-psx_466.1, EG628080, G630014P10Rik, LOC667013, Mtm1, Mtmr1, Cd99l2, LOC667017, Hmgb3, LOC100040549, Gpr50
Downstream gene	Prrg3, Fate1, Cnga2, Magea4, Gabre, Magea10, Gabra3, Gabrq, Magea9, Cetn2, Nsdhl
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC666993 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666993
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Ppia-psx_466.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606531
definition	note : peptidylprolyl isomerase A pseudogene x_466.1 pseudo : _no_value

name	EG628080 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:628080 MGI:3649029
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	G630014P10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:333639 MGI:3045303
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667013 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667013
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 217 ESTs, 11 Proteins pseudo : _no_value

name	Mtm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17772 MGI:1099452
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mtmr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53332 MGI:1858271
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd99l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171486 MGI:2177151
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667017 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667017
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	Hmgb3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15354 MGI:1098219
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040549 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040549
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Gpr50 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14765 MGI:1333877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC654357 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:654357
definition	note : ribosomal protein L30 pseudogene pseudo : _no_value

name	2610030H06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67048 MGI:1914298
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm1141 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382221 MGI:2685987
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prrg3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208748 MGI:2685214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fate1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77905 MGI:1925155
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	Cnga2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12789 MGI:108040
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Magea4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17140 MGI:1333839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gabre (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14404 MGI:1330235
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Magea10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236852 MGI:3588211
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 48 Proteins

name	Gabra3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14396 MGI:95615
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gabrq (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57249 MGI:1888498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Magea9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:195772 MGI:1350986
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cetn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26370 MGI:1347085
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nsdhl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18194 MGI:1099438
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG628080 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407533 GeneID:628080 MGI:3649029
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG628080 transcript_id : XM_900336.2

name	G630014P10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486842 GeneID:333639 MGI:3045303
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA G630014P10 gene transcript_id : NM_001081354.1

name	Mtm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802570 GeneID:17772 MGI:1099452
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : X-linked myotubular myopathy gene 1 transcript_id : NM_019926.2

name	Mtmr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57528446 GeneID:53332 MGI:1858271
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myotubularin related protein 1 transcript_id : NM_016985.2

name	Cd99l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129961 GeneID:171486 MGI:2177151
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Cd99 antigen-like 2 transcript_id : NM_138309.2

name	Hmgb3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892877 GeneID:15354 MGI:1098219
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : high mobility group box 3 transcript_id : NM_008253.3

name	LOC100040549 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271688 GeneID:100040549
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to Ubtf protein transcript_id : XM_001474894.1

name	Gpr50 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754059 GeneID:14765 MGI:1333877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G-protein-coupled receptor 50 transcript_id : NM_010340.1

name	2610030H06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486866 GeneID:67048 MGI:1914298
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2610030H06 gene transcript_id : NM_001081356.1

name	Gm1141 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387299 GeneID:382221 MGI:2685987
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 1141, (NCBI) transcript_id : NM_001033470.2

name	Prrg3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487490 GeneID:208748 MGI:2685214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) transcript_id : NM_001081135.1

name	Cnga2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982858 GeneID:12789 MGI:108040
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclic nucleotide gated channel alpha 2 transcript_id : NM_007724.2

name	Magea4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9937975 GeneID:17140 MGI:1333839
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : melanoma antigen, family A, 4 transcript_id : NM_020280.1

name	Gabre (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114145508 GeneID:14404 MGI:1330235
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gamma-aminobutyric acid (GABA-A) receptor, subunit epsilon transcript_id : NM_017369.2

name	Magea10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271690 GeneID:236852 MGI:3588211
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 48 Proteins product : melanoma antigen family A, 10 transcript_id : XM_001474626.1

name	Gabra3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382325 GeneID:14396 MGI:95615
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 3 transcript_id : NM_008067.3

name	Gabrq (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10048421 GeneID:57249 MGI:1888498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gamma-aminobutyric acid (GABA-A) receptor, subunit theta transcript_id : NM_020488.1

name	Magea9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32469504 GeneID:195772 MGI:1350986
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : melanoma antigen, family A, 9 transcript_id : NM_181855.1

name	Cetn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368991 GeneID:26370 MGI:1347085
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centrin 2 transcript_id : NM_019405.6

name	Nsdhl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982436 GeneID:18194 MGI:1099438
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NAD(P) dependent steroid dehydrogenase-like transcript_id : NM_010941.3

name	EG628080 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407534 GeneID:628080 MGI:3649029
definition	codon_start : 1 product : hypothetical protein protein_id : XP_905429.2

name	G630014P10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486843 GeneID:333639 MGI:3045303
definition	codon_start : 1 product : hypothetical protein LOC333639 protein_id : NP_001074823.1

name	Mtm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910456 CCDS:CCDS30177.1 GeneID:17772 MGI:1099452
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004437 - inositol or phosphatidylinositol phosphatase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA] GO_process : GO:0046716 - muscle maintenance [Evidence IMP]; GO:0046839 - phospholipid dephosphorylation [Evidence IEA]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : myotubularin protein_id : NP_064310.1

name	Mtmr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8393794 CCDS:CCDS30178.1 GeneID:53332 MGI:1858271
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004437 - inositol or phosphatidylinositol phosphatase activity [Evidence IEA]; GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IDA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA] GO_process : GO:0046839 - phospholipid dephosphorylation [Evidence IEA]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 product : myotubularin-related protein 1 protein_id : NP_058681.1

name	Cd99l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21489963 CCDS:CCDS30179.1 GeneID:171486 MGI:2177151
definition	codon_start : 1 note : MIC2 like-1; MIC2 (monoclonal Imperial Cancer Research Fund 2)-like 1 product : Cd99 antigen-like 2 protein_id : NP_612182.1

name	Hmgb3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680231 CCDS:CCDS30180.1 GeneID:15354 MGI:1098219
definition	GO_component : GO:0000785 - chromatin [Evidence IEA]; GO:0005694 - chromosome [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006323 - DNA packaging [Evidence IEA]; GO:0045578 - negative regulation of B cell differentiation [Evidence IDA]; GO:0045638 - negative regulation of myeloid cell differentiation [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : high-mobility group protein 4; high mobilty group protein 2A product : high mobility group box 3 protein_id : NP_032279.1

name	LOC100040549 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271689 GeneID:100040549
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474944.1

name	Gpr50 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754060 CCDS:CCDS30181.1 GeneID:14765 MGI:1333877
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G-protein-coupled receptor 50 protein_id : NP_034470.1

name	2610030H06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486867 GeneID:67048 MGI:1914298
definition	codon_start : 1 note : RNA binding protein-like product : hypothetical protein LOC67048 protein_id : NP_001074825.1

name	Gm1141 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701991 CCDS:CCDS30182.1 GeneID:382221 MGI:2685987
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC382221 protein_id : NP_001028642.1

name	Prrg3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487491 GeneID:208748 MGI:2685214
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 note : transmembrane gamma-carboxyglutamic acid protein 3 product : proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) protein_id : NP_001074604.1

name	Cnga2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982859 CCDS:CCDS30184.1 GeneID:12789 MGI:108040
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0030552 - cAMP binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IMP]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : cyclic nucleotide gated channel 4 product : cyclic nucleotide gated channel alpha 2 protein_id : NP_031750.2

name	Magea4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9937976 CCDS:CCDS30185.1 GeneID:17140 MGI:1333839
definition	codon_start : 1 exception : mismatches in translation product : melanoma antigen family A, 4 protein_id : NP_064676.1

name	Gabre (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114145509 CCDS:CCDS30186.1 GeneID:14404 MGI:1330235
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0004890 - GABA-A receptor activity [Evidence IEA] [Evidence ISS]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006821 - chloride transport [Evidence ISS]; GO:0007214 - gamma-aminobutyric acid signaling pathway [Evidence ISS] codon_start : 1 product : gamma-aminobutyric acid (GABA-A) receptor, subunit epsilon protein_id : NP_059065.2

name	Magea10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271691 GeneID:236852 MGI:3588211
definition	codon_start : 1 product : similar to melanoma antigen family A, 10 protein_id : XP_001474676.1

name	Gabra3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560695 CCDS:CCDS30187.1 GeneID:14396 MGI:95615
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0004890 - GABA-A receptor activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006821 - chloride transport [Evidence IEA]; GO:0007214 - gamma-aminobutyric acid signaling pathway [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 3 protein_id : NP_032093.2

name	Gabrq (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10048422 CCDS:CCDS30188.1 GeneID:57249 MGI:1888498
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0004890 - GABA-A receptor activity [Evidence ISS] [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006821 - chloride transport [Evidence ISS]; GO:0007214 - gamma-aminobutyric acid signaling pathway [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : gamma-aminobutyric acid (GABA) A receptor, theta; gamma-aminobutyric acid (GABA-A) receptor, theta product : gamma-aminobutyric acid (GABA-A) receptor, subunit theta protein_id : NP_065234.1

name	Magea9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32469505 CCDS:CCDS30189.1 GeneID:195772 MGI:1350986
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : melanoma antigen family A, 9 protein_id : NP_862903.1

name	Cetn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10257421 GeneID:26370 MGI:1347085
definition	GO_component : GO:0005814 - centriole [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence TAS]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 note : caltractin, 20 kDa calcium binding protein product : centrin 2 protein_id : NP_062278.2

name	Nsdhl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982437 CCDS:CCDS30190.1 GeneID:18194 MGI:1099438
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003854 - 3-beta-hydroxy-delta5-steroid dehydrogenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0004769 - steroid delta-isomerase activity [Evidence IEA]; GO:0047012 - sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity [Evidence IEA] GO_process : GO:0006695 - cholesterol biosynthesis [Evidence IEA]; GO:0008203 - cholesterol metabolism [Evidence IMP]; GO:0008610 - lipid biosynthesis [Evidence IEA]; GO:0006694 - steroid biosynthesis [Evidence IEA]; GO:0016126 - sterol biosynthesis [Evidence IEA] codon_start : 1 note : striated; bare patches product : NAD(P) dependent steroid dehydrogenase-like protein_id : NP_035071.3

name	LOC666993 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666993
definition	number : 1 pseudo : _no_value

name	LOC667017 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667017
definition	number : 1 pseudo : _no_value

name	LOC667013 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271687 GeneID:667013
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 217 ESTs, 11 Proteins product : similar to heterogeneous nuclear ribonucleoprotein A3 pseudo : _no_value transcript_id : XR_031583.1

name	Fate1 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:116089270 GeneID:77905 MGI:1925155
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fetal and adult testis expressed 1 pseudo : _no_value transcript_id : NR_003243.1

clone name	MSMg01-316J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428A10
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-492C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164D08
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-230B21.b	B6Ng01-230B21.g
ACC	GA043067	GA043068
length	966	1,087
definition	B6Ng01-230B21.b	B6Ng01-230B21.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(69,018,017 - 69,018,621)	(69,189,284 - 69,190,366)
sequence	ggaattctcattcacccctcaggcctatgaatttagctactctttctctc cagctccaaaacatagctgtgcttgtctctctttcttctaccgctgttaa actaagtgtacgtattcttttgtgattggaatacctcactcaggatgata tcttccagatccatccatttgcctaaacattccataagtttattgttttt aatagctgagtagtactccactgtgtaaatgtaccacattttctgtatcc attcctctgttgagggacatctgggttctttccagcttctggctattata aataaggctgctatggacataatggggcatgtgtccttattacatgttgg gacatcgtctgagtatatgcccaggagaggtattgctggatctttcggta gtactatgtccaattttctgaggagctgccaaactgatttccagtgtggt tgtacaagcttgcaatcccaccagcaacagaggagtgttcctctttctcc acatcctcaccagcatctgctgtcacctgagtttttgatcttagccattc tgactggtgtgaggtggaatctcagtgttgttttgatttgcatttccctg atgaccattcaagtttcctcagttgagaattctttgtttagctctgtacc ccatttttaatagggttgtttctctggagtctaacttcttgagttctttg tatatattgggtattagccctctattgtatataggattgggtaaagatct tttcccaatctgttggttgctgttttgtcttattgacagtgtcttttgcc ttacagaagctttgcaattttatgaggtcccatctacacaatggagtact actcagctattttaaatcaatggatggatggaactagaatatatcatctg agtgaggtacaccagtgacaaaaggtgcacacatgatatgcactcactga ttagtggatataagct	gaattcactattctaaatactgcaatttgtctgtcctgtctgttgacctt tgcctgtctgcatttgacatgttttgattctgtagggttgtgggttttgt ttcatcaacaaggtgactatgtggttaattaccctttgacttttagggtc agggcctccatctgagcaggaaacacccatggctccagaagttttaggca tcttgtcatttaactgtcattgtcaatctttcacccttctatcactccca tctctttgcagtctcgggagttgtgtgtgctgtggagaaacttccagagg ctaactggagccaccaaagtgttggtaatgtgtgtggctgtctcatctac caagtttcagtcactccctagtttcatcagattatacctatcccagggat cagacctctgatggtaggggtccctccctgaggaggaaacctgagccctg ctgctttaggttcacacacttaggatgagttacacttgagccacatagac tgggcagaggtagaacactttcttgttgaacctatcagcttctgtcaagt ggtctaggccagtcttgatttcccacttgctcttgactcaagccactgat tttctttgtgaaacattttcctggtgtcaactaagcactggtttcacaaa gacattcaccttgaatatttgtggaaagccagttaagttcggcaaggtcc taagttttgggagctatgggaacatctacagtctgatacaacctctaccc attgtgggggcagtttagaagagcaactatgcacatacagctggtgctga acagagtcaggagagtccaagagagccagggagctcttcccacctggctt ctgcattgtgggcaaagatgcagttgtgttgggatggtgttttgctgggg caaacatgtgaaaggactgttttcctgaagtggacacaggtgtgaaaggc taaaggagacaactgaaaggaatgtttcacctaagcagacacaggaggaa agatgatctgctaaacaagcatgtgaaaggaacacatgatgacggatctt tgctaacagggcatgcgttgatctgccttaacgctgc
quality values	Open. Hide. 13 58 29 13 22 58 54 54 31 25 58 58 26 13 58 46 62 62 62 42 27 62 62 62 62 62 62 62 62 49 26 29 22 16 13 9 18 31 36 25 32 38 32 46 56 62 62 62 62 62 59 30 62 62 62 62 59 43 62 62 62 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 43 43 50 32 48 50 62 62 62 49 62 62 59 62 59 62 62 62 59 59 62 59 62 62 62 59 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 54 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 59 62 59 62 62 62 62 62 62 59 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 54 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 56 62 56 62 62 62 54 62 62 56 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 49 54 49 62 62 62 62 54 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 62 62 62 62 47 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 47 42 62 62 62 62 62 62 62 62 52 52 41 38 52 62 62 62 62 62 62 62 62 62 62 62 47 52 52 62 62 54 58 58 52 58 58 58 58 58 54 58 58 58 54 58 54 58 58 54 52 54 41 58 58 52 58 58 54 52 46 52 54 58 58 58 58 52 54 54 54 52 54 52 54 54 58 58 54 52 44 54 54 52 58 54 54 54 58 58 58 54 58 54 54 50 46 58 58 58 54 32 58 58 58 58 58 58 42 46 54 58 51 52 52 51 58 42 51 58 51 49 48 41 44 48 58 58 49 58 50 58 46 32 37 50 45 58 58 58 51 50 54 46 42 50 51 58 58 51 58 41 58 58 58 54 40 39 58 54 51 47 50 51 51 51 49 39 43 51 58 58 40 51 38 32 35 28 51 58 39 32 46 49 51 51 52 50 51 51 53 53 40 51 51 51 58 42 58 34 34 52 52 49 39 50 51 50 58 54 51 39 54 49 43 51 50 41 39 44 43 41 51 41 43 58 58 58 31 50 50 50 47 40 58 44 21 50 51 35 58 50 52 53 52 50 43 44 49 24 39 40 37 38 38 38 46 24 41 45 51 41 52 39 47 42 35 40 49 44 49 32 39 42 52 39 45 50 35 49 33 54 32 29 18 54 39 32 37 34 35 40 35 37 34 45 44 51 29 33 42 38 45 38 31 47 24 13 54 14 46 18 25 28 54 54 33 26 21 37 37 54 54 35 33 54 52 17 36 27 47 33 51 34 54 32 12 24 39 34 32 31 53 53 53 52 31 35 35 32 37 24 41 52 35 32 31 31 28 25 32 42 31 32 32 46 47 30 32 26 32 28 31 33 30 31 21 36 29 8 32 30 46 45 30 30 26 31 38 51 51 40 32 31 31 31 19 51 20 24 51 30 16 34 43 34 28 32 13 31 19 33 29 29 41 43 19 11 16 22 31 32 42 38 33 28 31 22 6 14 12 46 46 19 34 48 23 31 34 23 27 22 31 29 16 26 31 14 24 25 26 42 31 34 24 29 23 12 13 21 31 20 31 31 32 36 31 30 31 31 30 32 15 31 29 32 30 20 11 29 9 6 5 11 29 12 26 31 24 17 12 39 46 12 9 9 15 31 33 17 24 11 20 8 38 33 21 10 18 20 19 21 22 25 33 33 27 36 20 31 16 11 6 28 11 12 9 10 21 19 11 31 6 24 21 30 24	Open. Hide. 62 35 56 59 62 44 41 59 59 59 59 34 28 23 28 25 27 48 32 28 49 49 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 54 54 49 54 49 48 62 62 54 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 59 59 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 44 49 49 47 62 62 62 62 47 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 47 54 62 62 62 62 62 62 62 62 62 62 62 47 47 47 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 54 49 45 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 52 58 58 58 58 58 51 52 58 58 58 54 58 58 58 58 41 58 58 54 54 58 58 54 58 54 54 58 58 58 54 58 58 58 58 58 58 54 54 58 58 54 58 39 42 58 58 58 58 58 58 54 58 58 58 58 43 58 54 50 50 49 49 43 47 48 58 46 42 53 58 58 58 50 58 58 58 58 58 58 58 58 58 50 50 58 58 58 49 53 58 54 58 58 47 58 51 52 50 48 54 51 36 51 52 54 50 44 49 54 49 51 58 49 49 35 50 49 43 58 50 48 42 29 58 51 53 40 44 43 50 43 44 51 49 50 42 41 58 58 58 50 54 49 50 58 54 39 40 49 39 52 58 33 49 46 37 51 50 42 53 49 40 50 47 40 58 40 40 50 49 45 53 40 53 54 54 47 54 54 36 32 23 47 39 33 39 41 54 49 33 39 52 32 53 53 52 42 51 25 53 40 42 50 51 30 32 37 53 42 41 39 42 51 40 33 40 39 28 16 17 42 46 37 29 53 54 54 44 34 33 42 41 54 54 53 41 14 51 54 25 33 18 45 29 33 36 42 42 34 32 45 28 42 30 53 32 53 29 37 37 32 31 49 32 45 32 53 34 33 38 32 32 26 36 16 32 39 38 20 51 35 18 42 17 40 23 31 22 29 30 46 23 27 16 40 18 28 31 46 44 37 21 31 30 30 32 27 16 46 25 25 18 29 23 30 37 30 33 33 32 31 37 31 24 30 42 42 28 41 41 46 25 15 46 46 31 31 32 34 43 32 18 43 42 19 17 23 27 33 18 46 9 31 27 39 39 22 31 29 48 46 32 31 34 34 26 46 39 28 11 30 46 31 27 23 31 27 28 30 30 41 18 12 32 20 18 32 21 25 46 46 25 21 22 29 26 30 25 17 13 27 19 14 9 9 7 5 10 22 24 25 20 14 29 48 13 14 19 27 38 11 36 9 31 24 6 6 12 13 16 24 31 26 24 18 43 11 18 16 19 19 23 26 20 39 32 31 22 18 28 23 17 34 22 32 17 11 25 8 11 21 21 24 14 11 13 33 9 39 8 30 7 21 19 22 27 28 34 34 32 26 33 48 21 8 8 14 23 25 18 19 10 14 16 23 30 22 20 10 8 5 4 5 3 3 3 8 21 6 6 3 5 12 9 14 28 8 8 29 12 11 17 27 24 9 6 3 3 21 6 5 12 24 10 6 4 7 15 19 17 12 7 18 11 11 15 8 18 9 11 9 7 19 7 11 7

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_69018017_69018621
seq2: B6Ng01-230B21.b_48_652

seq1  GAATTCTCATTCACCCCTCAGGCCTATGAATTTAGCTACTCTTTCTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTCACCCCTCAGGCCTATGAATTTAGCTACTCTTTCTCTCC  50

seq1  AGCTCCAAAACATAGCTGTGCTTGTCTCTCTTTCTTCTACCGCTGTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAAAACATAGCTGTGCTTGTCTCTCTTTCTTCTACCGCTGTTAAA  100

seq1  CTAAGTGTACGTATTCTTTTGTGATTGGAATACCTCACTCAGGATGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTACGTATTCTTTTGTGATTGGAATACCTCACTCAGGATGATAT  150

seq1  CTTCCAGATCCATCCATTTGCCTAAACATTCCATAAGTTTATTGTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGATCCATCCATTTGCCTAAACATTCCATAAGTTTATTGTTTTTA  200

seq1  ATAGCTGAGTAGTACTCCACTGTGTAAATGTACCACATTTTCTGTATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGAGTAGTACTCCACTGTGTAAATGTACCACATTTTCTGTATCCA  250

seq1  TTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAA  300

seq1  ATAAGGCTGCTATGGACATAATGGGGCATGTGTCCTTATTACATGTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCTGCTATGGACATAATGGGGCATGTGTCCTTATTACATGTTGGG  350

seq1  ACATCGTCTGAGTATATGCCCAGGAGAGGTATTGCTGGATCTTTCGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGTCTGAGTATATGCCCAGGAGAGGTATTGCTGGATCTTTCGGTAG  400

seq1  TACTATGTCCAATTTTCTGAGGAGCTGCCAAACTGATTTCCAGTGTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTCCAATTTTCTGAGGAGCTGCCAAACTGATTTCCAGTGTGGTT  450

seq1  GTACAAGCTTGCAATCCCACCAGCAACAGAGGAGTGTTCCTCTTTCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGCTTGCAATCCCACCAGCAACAGAGGAGTGTTCCTCTTTCTCCA  500

seq1  CATCCTCACCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCACCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCT  550

seq1  GACTGGTGTGAGGTGGAATCTCAGTGTTGTTTTGATTTGCATTTCCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTGTGAGGTGGAATCTCAGTGTTGTTTTGATTTGCATTTCCCTGA  600

seq1  TGACC  605
      |||||
seq2  TGACC  605

seq1: chrX_69189284_69190366
seq2: B6Ng01-230B21.g_69_1155 (reverse)

seq1  GCAGCG-TAAGGCAGATCAACGCATG-CCTGTTAGCAAAGAATCCTTCAT  48
      |||||| ||||||||||||||||||| ||||||||||||| |||| ||||
seq2  GCAGCGTTAAGGCAGATCAACGCATGCCCTGTTAGCAAAG-ATCCGTCAT  49

seq1  CATGTG-TCCTTTCACATGCTTGTTTTAGCAGATCATCCTTCCTCCTGTG  97
      |||||| |||||||||||||||| |||||||||||||| |||||||||||
seq2  CATGTGTTCCTTTCACATGCTTG-TTTAGCAGATCATCTTTCCTCCTGTG  98

seq1  TCTGCTTAGGTGAAACATTCC-TTCAGTTGTCTCCCTTAGCCTTTCACAC  146
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  TCTGCTTAGGTGAAACATTCCTTTCAGTTGTCTCCTTTAGCCTTTCACAC  148

seq1  CTGTGTCCACTTCAGGAAAACAGTCC-TTCACATGTTTGCCCCAGCAAAA  195
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGTGTCCACTTCAGGAAAACAGTCCTTTCACATGTTTGCCCCAGCAAAA  198

seq1  CACCAT-CCAACACAACTGCATCTTTGCCCACAATGCAGAAGCCAGGTGG  244
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCCAACACAACTGCATCTTTGCCCACAATGCAGAAGCCAGGTGG  248

seq1  GAAGAGCTCCCTGGCTCTCTTGGACTCTCCTGACTCTGTTCAGCACCAGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTCCCTGGCTCTCTTGGACTCTCCTGACTCTGTTCAGCACCAGC  298

seq1  TGTATGTGCATAGTTGCTCTTCTAAACTGCCCCCACAATGGGTAGAGGTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGCATAGTTGCTCTTCTAAACTGCCCCCACAATGGGTAGAGGTT  348

seq1  GTATCAGACTGTAGATGTTCCCATAGCTCCCAAAACTTAGGACCTTGCCG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGACTGTAGATGTTCCCATAGCTCCCAAAACTTAGGACCTTGCCG  398

seq1  AACTTAACTGGCTTTCCACAAATATTCAAGGTGAATGTCTTTGTGAAACC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTGGCTTTCCACAAATATTCAAGGTGAATGTCTTTGTGAAACC  448

seq1  AGTGCTTAGTTGACACCAGGAAAATGTTTCACAAAGAAAATCAGTGGCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTAGTTGACACCAGGAAAATGTTTCACAAAGAAAATCAGTGGCTT  498

seq1  GAGTCAAGAGCAAGTGGGAAATCAAGACTGGCCTAGACCACTTGACAGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGAGCAAGTGGGAAATCAAGACTGGCCTAGACCACTTGACAGAA  548

seq1  GCTGATAGGTTCAACAAGAAAGTGTTCTACCTCTGCCCAGTCTATGTGGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAGGTTCAACAAGAAAGTGTTCTACCTCTGCCCAGTCTATGTGGC  598

seq1  TCAAGTGTAACTCATCCTAAGTGTGTGAACCTAAAGCAGCAGGGCTCAGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTAACTCATCCTAAGTGTGTGAACCTAAAGCAGCAGGGCTCAGG  648

seq1  TTTCCTCCTCAGGGAGGGACCCCTACCATCAGAGGTCTGATCCCTGGGAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTCAGGGAGGGACCCCTACCATCAGAGGTCTGATCCCTGGGAT  698

seq1  AGGTATAATCTGATGAAACTAGGGAGTGACTGAAACTTGGTAGATGAGAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATAATCTGATGAAACTAGGGAGTGACTGAAACTTGGTAGATGAGAC  748

seq1  AGCCACACACATTACCAACACTTTGGTGGCTCCAGTTAGCCTCTGGAAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACACATTACCAACACTTTGGTGGCTCCAGTTAGCCTCTGGAAGT  798

seq1  TTCTCCACAGCACACACAACTCCCGAGACTGCAAAGAGATGGGAGTGATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACAGCACACACAACTCCCGAGACTGCAAAGAGATGGGAGTGATA  848

seq1  GAAGGGTGAAAGATTGACAATGACAGTTAAATGACAAGATGCCTAAAACT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGAAAGATTGACAATGACAGTTAAATGACAAGATGCCTAAAACT  898

seq1  TCTGGAGCCATGGGTGTTTCCTGCTCAGATGGAGGCCCTGACCCTAAAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGCCATGGGTGTTTCCTGCTCAGATGGAGGCCCTGACCCTAAAAG  948

seq1  TCAAAGGGTAATTAACCACATAGTCACCTTGTTGATGAAACAAAACCCAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGTAATTAACCACATAGTCACCTTGTTGATGAAACAAAACCCAC  998

seq1  AACCCTACAGAATCAAAACATGTCAAATGCAGACAGGCAAAGGTCAACAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTACAGAATCAAAACATGTCAAATGCAGACAGGCAAAGGTCAACAG  1048

seq1  ACAGGACAGACAAATTGCAGTATTTAGAATAGTGAATTC  1083
      |||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACAGACAAATTGCAGTATTTAGAATAGTGAATTC  1087

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BAC

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Alignment Information