BAC Information

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BAC

Clone NameB6Ng01-230C03
ChromosomeX (Build37)
Map Location 161,744,262 - 161,838,159
singlet/doubletdoublet
Overlap geneGlra2
Upstream genePir, Figf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045
Downstream geneLOC100040753, Gemin8, Gpm6b, Ofd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230C03.bB6Ng01-230C03.g
ACCGA043075GA043076
length1,0671,173
definitionB6Ng01-230C03.b B6Ng01-230C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,744,262 - 161,745,348)(161,836,993 - 161,838,159)
sequence
gaattcacttagtcaacataaccatttctttagttcctaaaaaaaaaaaa
aaaaaaaaaaaaaaaaacaaaccaaaaccaaaacaaacagacaaataaaa
aaaaagaaagaaagaaagaaagaaatacatgaaacctggggcttcaaagg
caaattagattaaattaaacctctcatagaaaggtttacaagtgttttaa
aaatatatccaataaagtattccagatagaaactaagtgctcctgatatt
atttttaatgacatacattcctctccatcctaggctttataaatctggaa
agataatgtcagtttatgacccataaaaataacttctttctttttctaaa
cagcaagaagggaaaacaaaatcctggctgttttagattcgaggaaatgc
tgtgaagagccaaatgacataacacataggaatgttcttcataaatttta
aacagaacagatattgcaggattgcatattttagttgagttgctcatatc
caagtttgatcagtacaaatgtggggattaaagattaatataatcaacct
agttatttagtagatgtttattagatgctcactgactgctagtgttagaa
ttagcatgaagatgatattttccaatcctatttttcttttttctttttaa
attttttattagatattttctttatttacatttcaaatgttatccccttt
cctagtttcccctttgaaaatcccctatcccctactccctctccctgttc
cccaaaccacccactcccattcctggtcctggcattcccctatactggag
tatagaaccttcacaggatctagggcctctcctcccattgatgaccacct
aggccatcctctgtgacatatacaactagagcgacaacaccaatggcttg
tgctgtaagaacaagattgacaaatgagacctcataaaattgcaagcttc
tgtaaggcaaaggacactgtcatagaccaaaagcaccacagatgggaaag
atctttacatctaatctgataggggctatatcaatatattatagaaactc
agaggtggactcagaaa
gaattctcatctagaccgctgagcagtttaacttctttactgagaaaaat
ttggacttagtgcccaggtccatctggaatcacttccattgaaatacaga
ctatttttatctatgtgtgaatagttaattttcaaattcccattcacact
taggcaagaaacactaattaaactcagcagcaacacacaaaatgaagcaa
tgaaagtaggagggggacttgttgagaagagaagagtctcaatgggggag
ggagagaatgacagaggagagaaacagtatgcacatgggggtggtgaagg
ggaaaatgactaaaattcattgtatcagtgtatgagatattgaacaaaaa
tctaataatctaaatatttatttaacttcttcatagaatcatctaaaata
aaaagcacatccttgaccaaacaaaatatatagttggccaacattccttc
aagggttttgctttttgaactgacttgtagatttggtcaaaatcattgtt
aatactggttagattcagaggagacactctagattattcaccaatgattt
aaagccttatttgtagccttaattaagccttatatctcctgacatcaatg
cattcaaataccattatcatggctacaacagaatccttccctggcacatc
attccagtttcatttaaattgtaactccttgtaaccatattctgttgtat
ataatctttgttataaatgtacagttgatatgtccatacttgaacttgcg
acccacaccaggtgaaatatatgtccttacctgaaaatttgaaattagga
ctgatattcatgtctactggcactaacttaaaaaggaggtaaaaaaatct
acaattgatgtataatccctattttttcagtatacattcagcatcagaga
agtacagaataaaaaagtttgagagaggagagatgttaaagctgaagtaa
tgcagacagtgccttttaagccctctaaaacatttccttgatttcttagt
aggaaataatgattttccctatattagtttgggatccactaaaattttaa
tttcattctgtaaatgcatgggaaaaggagtcaagtagtatgaatacatt
tctcaatcaattgttctattccatgcctcctagttctattaaaggtccac
ctgcatttttcatagaaacatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_161744262_161745348
seq2: B6Ng01-230C03.b_48_1114

seq1  GAATTCACTTAGTCAACATAACCATTTCTTTAGTTCCTAAAAAAAAAAAA  50
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAATTCACTTAGTCAACATAACCATTTCTTTAGTTCCT-AAAAAAAAAAA  49

seq1  AAAAAAAAAAAAAAAAAACAAACCAAAACCAAAACAAACAGACAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAACAAACCAAAACCAAAACAAACAGACAAATAAA  99

seq1  AAAAAAGAAAGAAAGAAAGAAAGAAATACATGAAACCTGGGGCTTCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAGAAAGAAAGAAAGAAATACATGAAACCTGGGGCTTCAAAG  149

seq1  GCAAATTAGATTAAATTAAACCTCTCATAGAAAGGTTTACAAGTGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTAGATTAAATTAAACCTCTCATAGAAAGGTTTACAAGTGTTTTA  199

seq1  AAAATATATCCAATAAAGTATTCCAGATAGAAACTAAGTGCTCCTGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATCCAATAAAGTATTCCAGATAGAAACTAAGTGCTCCTGATAT  249

seq1  TATTTTTAATGACATACATTCCTCTCCATCCTAGGCTTTATAAATCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAATGACATACATTCCTCTCCATCCTAGGCTTTATAAATCTGGA  299

seq1  AAGATAATGTCAGTTTATGACCCATAAAAATAACTTCTTTCTTTTTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATGTCAGTTTATGACCCATAAAAATAACTTCTTTCTTTTTCTAA  349

seq1  ACAGCAAGAAGGGAAAACAAAATCCTGGCTGTTTTAGATTCGAGGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGAAGGGAAAACAAAATCCTGGCTGTTTTAGATTCGAGGAAATG  399

seq1  CTGTGAAGAGCCAAATGACATAACACATAGGAATGTTCTTCATAAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGAGCCAAATGACATAACACATAGGAATGTTCTTCATAAATTTT  449

seq1  AAACAGAACAGATATTGCAGGATTGCATATTTTAGTTGAGTTGCTCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACAGATATTGCAGGATTGCATATTTTAGTTGAGTTGCTCATAT  499

seq1  CCAAGTTTGATCAGTACAAATGTGGGGATTAAAGATTAATATAATCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTGATCAGTACAAATGTGGGGATTAAAGATTAATATAATCAACC  549

seq1  TAGTTATTTAGTAGATGTTTATTAGATGCTCACTGACTGCTAGTGTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTTAGTAGATGTTTATTAGATGCTCACTGACTGCTAGTGTTAGA  599

seq1  ATTAGCATGAAGATGATATTTTCCAATCCTATTTTTCTTTTTTCTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATGAAGATGATATTTTCCAATCCTATTTTTCTTTTTTCTTTTTA  649

seq1  AATTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGTTATCCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGTTATCCCCTT  699

seq1  TCCTAGTTTCCCCTTTGAAAATCCCCTATCCCCTACTCCCTCTCCCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTTCCCCTTTGAAAATCCCCTATCCCCTACTCCCTCTCCCTGTT  749

seq1  CCCCAAACCACCCACTCCCATTCCTGGTCCTGGCATTCCCCTATACTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACCACCCACTCCCATTCCTGGTCCTGGCATTCCCCTATACTGGA  799

seq1  GTATAGAACCTTCACAGGATCTAGGGCCTCTCCTCCCATTGATGACCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAACCTTCACAGGATCTAGGGCCTCTCCTCCCATTGATGACCACC  849

seq1  TAGGCCATCCTCTGTGACATATACAACTAGAGCGACAACACCAATGGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCATCCTCTGTGACATATACAACTAGAGCGACAACACCAATGGCTT  899

seq1  GTGCTGTAAGAACAAGAATTGACAAATGAGACCTCATAAAATTGCAAAGC  950
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  GTGCTGTAAGAACAAG-ATTGACAAATGAGACCTCATAAAATTGC-AAGC  947

seq1  TTCTGTAAGGCAAAGGACACTGTCAATAAGACCAAAAGGCAACCAACAGA  1000
      |||||||||||||||||||||||||   ||||||||| |||  | |||||
seq2  TTCTGTAAGGCAAAGGACACTGTCA--TAGACCAAAA-GCA--CCACAGA  992

seq1  TTGGGAAAAGATCTTTACCAATCCTAAATCTGATAGGGGGCTAATATCCA  1050
      |  || ||||||||||||  |||   ||||||||| |||||| |||| ||
seq2  T--GGGAAAGATCTTTAC--ATC--TAATCTGATA-GGGGCT-ATAT-CA  1033

seq1  ATATATATAAGAAACTCAAGAAGTTGGACTCCAGAAA  1087
      ||||||   |||||||||   || |||||| ||||||
seq2  ATATATTATAGAAACTCA--GAGGTGGACT-CAGAAA  1067

seq1: chrX_161836993_161838159
seq2: B6Ng01-230C03.g_64_1236 (reverse)

seq1  ACATGTGTCTATGAAAAATTCAGTTG--CATTTAATAGAACTCTGAGGCA  48
      |||||| |||||||||||| ||| ||  | ||||||||||||  ||||||
seq2  ACATGTTTCTATGAAAAATGCAGGTGGACCTTTAATAGAACTAGGAGGCA  50

seq1  TGGAATTAGAC-ATTGATTTGGAGAAGGTATTCATACTACTTTGAACTC-  96
      ||||||   || |||||||  || || |||||||||||||||   |||| 
seq2  TGGAATAGAACAATTGATTGAGA-AATGTATTCATACTACTT--GACTCC  97

seq1  -TTTTCCATGCATTTACAGAATGAAAAT-AAATTTTAGTGGAT-CCAAAC  143
       ||| ||||||||||||||||||||| | |||||||||||||| ||||||
seq2  TTTTCCCATGCATTTACAGAATGAAATTAAAATTTTAGTGGATCCCAAAC  147

seq1  TAATATAGGGAAAATCATTATTTCCTACTAAGAAATCAAGGAAATGGTTT  193
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAATATAGGGAAAATCATTATTTCCTACTAAGAAATCAAGGAAAT-GTTT  196

seq1  TAGAGGGCTT-AAAGGCACTGTCTGCATTACTTCAGCTTTAACATCTCTC  242
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGCTTAAAAGGCACTGTCTGCATTACTTCAGCTTTAACATCTCTC  246

seq1  CTCTCTC-AACTTTTTTATTCTGTACTTCTCTGATGCTGAATGTATACTG  291
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAAACTTTTTTATTCTGTACTTCTCTGATGCTGAATGTATACTG  296

seq1  AAAAAATA-GGATTATACATCAATTGTAGATTTTTTTACCTCCTTTTTAA  340
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAGGGATTATACATCAATTGTAGATTTTTTTACCTCCTTTTTAA  346

seq1  GTTAGTGCCAGTAGACATGAATATCAGTCCTAATTTCAAATTTTCAGGTA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGCCAGTAGACATGAATATCAGTCCTAATTTCAAATTTTCAGGTA  396

seq1  AGGACATATATTTCACCTGGTGTGGGTCGCAAGTTCAAGTATGGACATAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATATATTTCACCTGGTGTGGGTCGCAAGTTCAAGTATGGACATAT  446

seq1  CAACTGTACATTTATAACAAAGATTATATACAACAGAATATGGTTACAAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTACATTTATAACAAAGATTATATACAACAGAATATGGTTACAAG  496

seq1  GAGTTACAATTTAAATGAAACTGGAATGATGTGCCAGGGAAGGATTCTGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACAATTTAAATGAAACTGGAATGATGTGCCAGGGAAGGATTCTGT  546

seq1  TGTAGCCATGATAATGGTATTTGAATGCATTGATGTCAGGAGATATAAGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCATGATAATGGTATTTGAATGCATTGATGTCAGGAGATATAAGG  596

seq1  CTTAATTAAGGCTACAAATAAGGCTTTAAATCATTGGTGAATAATCTAGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTAAGGCTACAAATAAGGCTTTAAATCATTGGTGAATAATCTAGA  646

seq1  GTGTCTCCTCTGAATCTAACCAGTATTAACAATGATTTTGACCAAATCTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCCTCTGAATCTAACCAGTATTAACAATGATTTTGACCAAATCTA  696

seq1  CAAGTCAGTTCAAAAAGCAAAACCCTTGAAGGAATGTTGGCCAACTATAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGTTCAAAAAGCAAAACCCTTGAAGGAATGTTGGCCAACTATAT  746

seq1  ATTTTGTTTGGTCAAGGATGTGCTTTTTATTTTAGATGATTCTATGAAGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTGGTCAAGGATGTGCTTTTTATTTTAGATGATTCTATGAAGA  796

seq1  AGTTAAATAAATATTTAGATTATTAGATTTTTGTTCAATATCTCATACAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATAAATATTTAGATTATTAGATTTTTGTTCAATATCTCATACAC  846

seq1  TGATACAATGAATTTTAGTCATTTTCCCCTTCACCACCCCCATGTGCATA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAATGAATTTTAGTCATTTTCCCCTTCACCACCCCCATGTGCATA  896

seq1  CTGTTTCTCTCCTCTGTCATTCTCTCCCTCCCCCATTGAGACTCTTCTCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTCTCCTCTGTCATTCTCTCCCTCCCCCATTGAGACTCTTCTCT  946

seq1  TCTCAACAAGTCCCCCTCCTACTTTCATTGCTTCATTTTGTGTGTTGCTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACAAGTCCCCCTCCTACTTTCATTGCTTCATTTTGTGTGTTGCTG  996

seq1  CTGAGTTTAATTAGTGTTTCTTGCCTAAGTGTGAATGGGAATTTGAAAAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTAATTAGTGTTTCTTGCCTAAGTGTGAATGGGAATTTGAAAAT  1046

seq1  TAACTATTCACACATAGATAAAAATAGTCTGTATTTCAATGGAAGTGATT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTCACACATAGATAAAAATAGTCTGTATTTCAATGGAAGTGATT  1096

seq1  CCAGATGGACCTGGGCACTAAGTCCAAATTTTTCTCAGTAAAGAAGTTAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGGACCTGGGCACTAAGTCCAAATTTTTCTCAGTAAAGAAGTTAA  1146

seq1  ACTGCTCAGCGGTCTAGATGAGAATTC  1167
      |||||||||||||||||||||||||||
seq2  ACTGCTCAGCGGTCTAGATGAGAATTC  1173