BAC Information

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BAC

Clone NameB6Ng01-233L05
ChromosomeX (Build37)
Map Location 39,873,481 - 39,896,402
singlet/doubletdoublet
Overlap geneSh2d1a, Odz1
Upstream geneGria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2, LOC100039899
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233L05.bB6Ng01-233L05.g
ACCGA045682GA045683
length1,0981,108
definitionB6Ng01-233L05.b B6Ng01-233L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,895,295 - 39,896,402)(39,873,481 - 39,874,588)
sequence
gaattcattcctaggaaaagtagaagatattttctttccccctgggtaat
cagtatctcttagatacaagagatgatggcacacatggcaaagaggggac
aatttgtgtgcttctgatacaaccatcaaagtttggttttcgagaagtgg
tgtgcccataaacagctattacttcgcagaggtggtagttgaagcactgc
cctccctgagaattgcctatgtgataaagcaaacttagtagcctctcagg
gtccctcccttctgggaaagcttttagaatctgtaatctgaattctgagc
aagggaaatctgcatctcacagagcaaatctttcctcttttgaatttcaa
caaagcatgcctgggaaaatcccgcggctaaggactacattgactgcatt
aaaacattaagtgaatccaaatatttggtagcatctacacatagtcaaaa
tgtttcataaggaatttgctaataactttggtacatatgcacatttttga
aacacatgtatgtatatttttaaaaatcatgccactaacctaacagtttt
ccctccccatgtgagttgggaagtagccaggagtccttagggacatgaag
gggtctatagcctccagagcaccagagtgtgaccatctcagctaattgac
tacagacagtaatagactgtcccttttacgccatctatataataaaatat
ctattgaaaagttaaaattcaacacggcatgcagttttctctgacaccag
tgaggagatatggtctctcttttccaaagtaactctttatttcatcacat
ttgcttcaggaatcacacaaaagaaacatcatattagatcttttttatac
aataaaatatttagtaggtatcagttccttaaaaaaacaaaaacaaaaac
aaaacaaaaaaacagcaaacagaccaacatagtagcacatacctgtatcc
tcagccctgaacaaggttgagacagagaatcacaatcctggtgacctttt
ctcaaaacaacaaaaagggacaaaaagatgagacctgttgacctagaata
taggaggaatttcacaacttccaattgtttacagaccagtggaacaag

gaattcattgtgggtaatggcctgtacacccttagaggttcgggatgtat
gatgggtagcagtcaagaagggcagggctgtgagcaagagcttgtaagga
ctaatactacccttgggagagctgagatgacagctcattagctcttcttg
cagggaaatgcagccaagcaaaggaagctcttctggatgttgttttgctt
tcttccttatgttttcaaatatttgagcaagttgcacaaatgttacctct
ctgcatccttctcacatcttataggtctttttatttttttaagcattaag
aggcaaataaataatggttttggtcttttatttttccagacagcacctgg
agtacataaaagatttttccggaaagtaaaaaatctcatctcagcgtttc
agaagccggatcaaggcatcgtgacgcctctgcagtatccagttgaaaag
tcctctggcaggggcccacaagctcccacaggtgtgctgcccagttttga
aagtattgcagagtttcgggttggggggcggggcatgtgggtaaacctat
tcatacccacgtcataaacaggaagacttataagaaaaacgcaacaagga
gagagctggagccagccaatcaggtgagaggtaatgacacaaaggggcca
taagatgctctaacacttacctttttcataaaaccgtagaactatggaaa
gtatgattccgggatattttaatctctttatttctagcttattgtccctc
ttcctctttgtagacagtaaataccactttgcttcagtaacccacgcatg
tacaatttgaaagatggcacaggaaggctagagctagcttggttcctgtg
attctgactcctggactgatgacctttgaatgaatgagtgaaatttttac
tgtagcaaaggaattcaaattagcaaacttggctgtttttaccagcatgc
atgattctcctgagcaaagttatttttagtgagttgttgagctcaggagt
gaacacgccagcagctgatgtcctctgttgtcttttatgaaaagggttag
tattttgctttgaggtgagaagattgccatgaatggatgcagtaatattt
aatgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_39895295_39896402
seq2: B6Ng01-233L05.b_45_1142 (reverse)

seq1  CTTGTTTCACTGGTCTGTAAACAATTGGAAGTTGTTGAAATTTCTCTTAT  50
      |||||| ||||||||||||||||||||||||||| ||||||| ||| || 
seq2  CTTGTTCCACTGGTCTGTAAACAATTGGAAGTTG-TGAAATTCCTCCTA-  48

seq1  TATTCTAGGTCAACAGGTCTTCCTTCTTTTTTTGTTCCCTTTTTGTTTGT  100
      ||||||||||||||||||||  | |||||||    ||||||||||||   
seq2  TATTCTAGGTCAACAGGTCT--CATCTTTTT---GTCCCTTTTTGTT--G  91

seq1  TTTTGAGAAAAGGTCA-CAGGATTTGTGATTCTCTTGTCTCAACCTTG-T  148
      |||||||||||||||| ||||| ||||||||||| ||||||||||||| |
seq2  TTTTGAGAAAAGGTCACCAGGA-TTGTGATTCTC-TGTCTCAACCTTGTT  139

seq1  CAGGGCTGAGGATACAGGTATGTGCTACTATGTTGGTCTGTTTTGCTGTT  198
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGGCTGAGGATACAGGTATGTGCTACTATGTTGGTCTG-TTTGCTGTT  188

seq1  TTTTTGTTTTGTTTTTGTTTTTGTTTTTTTAAGGAACTGATACCTACTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGTTTTTGTTTTTGTTTTTTTAAGGAACTGATACCTACTAA  238

seq1  ATATTTTATTGTATAAAAAAGATCTAATATGATGTTTCTTTTGTGTGATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTGTATAAAAAAGATCTAATATGATGTTTCTTTTGTGTGATT  288

seq1  CCTGAAGCAAATGTGATGAAATAAAGAGTTACTTTGGAAAAGAGAGACCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCAAATGTGATGAAATAAAGAGTTACTTTGGAAAAGAGAGACCA  338

seq1  TATCTCCTCACTGGTGTCAGAGAAAACTGCATGCCGTGTTGAATTTTAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCTCACTGGTGTCAGAGAAAACTGCATGCCGTGTTGAATTTTAAC  388

seq1  TTTTCAATAGATATTTTATTATATAGATGGCGTAAAAGGGACAGTCTATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATAGATATTTTATTATATAGATGGCGTAAAAGGGACAGTCTATT  438

seq1  ACTGTCTGTAGTCAATTAGCTGAGATGGTCACACTCTGGTGCTCTGGAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGTAGTCAATTAGCTGAGATGGTCACACTCTGGTGCTCTGGAGG  488

seq1  CTATAGACCCCTTCATGTCCCTAAGGACTCCTGGCTACTTCCCAACTCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGACCCCTTCATGTCCCTAAGGACTCCTGGCTACTTCCCAACTCAC  538

seq1  ATGGGGAGGGAAAACTGTTAGGTTAGTGGCATGATTTTTAAAAATATACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAGGGAAAACTGTTAGGTTAGTGGCATGATTTTTAAAAATATACA  588

seq1  TACATGTGTTTCAAAAATGTGCATATGTACCAAAGTTATTAGCAAATTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGTTTCAAAAATGTGCATATGTACCAAAGTTATTAGCAAATTCC  638

seq1  TTATGAAACATTTTGACTATGTGTAGATGCTACCAAATATTTGGATTCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAACATTTTGACTATGTGTAGATGCTACCAAATATTTGGATTCAC  688

seq1  TTAATGTTTTAATGCAGTCAATGTAGTCCTTAGCCGCGGGATTTTCCCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTTTAATGCAGTCAATGTAGTCCTTAGCCGCGGGATTTTCCCAG  738

seq1  GCATGCTTTGTTGAAATTCAAAAGAGGAAAGATTTGCTCTGTGAGATGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTTGTTGAAATTCAAAAGAGGAAAGATTTGCTCTGTGAGATGCA  788

seq1  GATTTCCCTTGCTCAGAATTCAGATTACAGATTCTAAAAGCTTTCCCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCCTTGCTCAGAATTCAGATTACAGATTCTAAAAGCTTTCCCAGA  838

seq1  AGGGAGGGACCCTGAGAGGCTACTAAGTTTGCTTTATCACATAGGCAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGACCCTGAGAGGCTACTAAGTTTGCTTTATCACATAGGCAATT  888

seq1  CTCAGGGAGGGCAGTGCTTCAACTACCACCTCTGCGAAGTAATAGCTGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAGGGCAGTGCTTCAACTACCACCTCTGCGAAGTAATAGCTGTT  938

seq1  TATGGGCACACCACTTCTCGAAAACCAAACTTTGATGGTTGTATCAGAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCACACCACTTCTCGAAAACCAAACTTTGATGGTTGTATCAGAAG  988

seq1  CACACAAATTGTCCCCTCTTTGCCATGTGTGCCATCATCTCTTGTATCTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAATTGTCCCCTCTTTGCCATGTGTGCCATCATCTCTTGTATCTA  1038

seq1  AGAGATACTGATTACCCAGGGGGAAAGAAAATATCTTCTACTTTTCCTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACTGATTACCCAGGGGGAAAGAAAATATCTTCTACTTTTCCTAG  1088

seq1  GAATGAATTC  1108
      ||||||||||
seq2  GAATGAATTC  1098


seq1: chrX_39873481_39874588
seq2: B6Ng01-233L05.g_66_1173

seq1  GAATTCATTGTGGGTAATGGCCTGTACACCCTTAGAGGTTCGGGATGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGGGTAATGGCCTGTACACCCTTAGAGGTTCGGGATGTAT  50

seq1  GATGGGTAGCAGTCAAGAAGGGCAGGGCTGTGAGCAAGAGCTTGTAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTAGCAGTCAAGAAGGGCAGGGCTGTGAGCAAGAGCTTGTAAGGA  100

seq1  CTAATACTACCCTTGGGAGAGCTGAGATGACAGCTCATTAGCTCTTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACTACCCTTGGGAGAGCTGAGATGACAGCTCATTAGCTCTTCTTG  150

seq1  CAGGGAAATGCAGCCAAGCAAAGGAAGCTCTTCTGGATGTTGTTTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAATGCAGCCAAGCAAAGGAAGCTCTTCTGGATGTTGTTTTGCTT  200

seq1  TCTTCCTTATGTTTTCAAATATTTGAGCAAGTTGCACAAATGTTACCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTATGTTTTCAAATATTTGAGCAAGTTGCACAAATGTTACCTCT  250

seq1  CTGCATCCTTCTCACATCTTATAGGTCTTTTTATTTTTTTAAGCATTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCTTCTCACATCTTATAGGTCTTTTTATTTTTTTAAGCATTAAG  300

seq1  AGGCAAATAAATAATGGTTTTGGTCTTTTATTTTTCCAGACAGCACCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAATAAATAATGGTTTTGGTCTTTTATTTTTCCAGACAGCACCTGG  350

seq1  AGTACATAAAAGATTTTTCCGGAAAGTAAAAAATCTCATCTCAGCGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATAAAAGATTTTTCCGGAAAGTAAAAAATCTCATCTCAGCGTTTC  400

seq1  AGAAGCCGGATCAAGGCATCGTGACGCCTCTGCAGTATCCAGTTGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCGGATCAAGGCATCGTGACGCCTCTGCAGTATCCAGTTGAAAAG  450

seq1  TCCTCTGGCAGGGGCCCACAAGCTCCCACAGGTGTGCTGCCCAGTTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGCAGGGGCCCACAAGCTCCCACAGGTGTGCTGCCCAGTTTTGA  500

seq1  AAGTATTGCAGAGTTTCGGGTTGGGGGGCGGGGCATGTGGGTAAACCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTGCAGAGTTTCGGGTTGGGGGGCGGGGCATGTGGGTAAACCTAT  550

seq1  TCATACCCACGTCATAAACAGGAAGACTTATAAGAAAAACGCAACAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCCACGTCATAAACAGGAAGACTTATAAGAAAAACGCAACAAGGA  600

seq1  GAGAGCTGGAGCCAGCCAATCAGGTGAGAGGTAATGACACAAAGGGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGGAGCCAGCCAATCAGGTGAGAGGTAATGACACAAAGGGGCCA  650

seq1  TAAGATGCTCTAACACTTACCTTTTTCATAAAACCGTAGAACTATGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGCTCTAACACTTACCTTTTTCATAAAACCGTAGAACTATGGAAA  700

seq1  GTATGATTCCGGGATATTTTAATCTCTTTATTTCTAGCTTATTGTCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATTCCGGGATATTTTAATCTCTTTATTTCTAGCTTATTGTCCCTC  750

seq1  TTCCTCTTTGTAGACAGTAAATACCACTTTGCTTCAGTAACCCACGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTGTAGACAGTAAATACCACTTTGCTTCAGTAACCCACGCATG  800

seq1  TACAATTTGAAAGATGGCACAGGAAGGCTAGAGCTAGCTTGGTTCCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTGAAAGATGGCACAGGAAGGCTAGAGCTAGCTTGGTTCCTGTG  850

seq1  ATTCTGACTCCTGGACTGATGACCTTTGAATGAATGAGTGAAATTTTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACTCCTGGACTGATGACCTTTGAATGAATGAGTGAAATTTTTAC  900

seq1  TGTAGCAAAGGAATTCAAATTAGCAAACTTGGCTG-TTTTACCAGCATGC  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTAGCAAAGGAATTCAAATTAGCAAACTTGGCTGTTTTTACCAGCATGC  950

seq1  ATGATTCTCCTGAGCAAAGTTATTTTTAGTGAGTTGTTGAGCTCAGGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTCCTGAGCAAAGTTATTTTTAGTGAGTTGTTGAGCTCAGGAGT  1000

seq1  GAACACGCCAGCCAGCTGATGT-CTCTGTTGTTCTTTTATGAAAAAGGGT  1048
      ||||||||||| |||||||||| |||||||| ||||||||| ||||||||
seq2  GAACACGCCAG-CAGCTGATGTCCTCTGTTG-TCTTTTATG-AAAAGGGT  1047

seq1  TAGTATTTTGTTTTGA-GTGAGAAGATTTGCCATG-ATTGATGCAGTTAA  1096
      |||||||||| ||||| ||||||||| |||||||| || ||||||| |||
seq2  TAGTATTTTGCTTTGAGGTGAGAAGA-TTGCCATGAATGGATGCAG-TAA  1095

seq1  TATTT-ATGATAA  1108
      ||||| |||||||
seq2  TATTTAATGATAA  1108


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