BAC Information

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BAC

Clone NameB6Ng01-235I11
ChromosomeX (Build37)
Map Location 94,587,286 - 94,704,838
singlet/doubletdoublet
Overlap genenone
Upstream geneB230358A15Rik, Heph, Gpr165, LOC675824, LOC668234, EG668236, LOC668238, Pgr15l, Eda2r
Downstream geneLOC668244, Ar
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235I11.bB6Ng01-235I11.g
ACCGA046984GA046985
length8561,164
definitionB6Ng01-235I11.b B6Ng01-235I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,587,286 - 94,588,141)(94,703,669 - 94,704,838)
sequence
gaattcagtgtcctagttgcatggtgtctttagcaatagggacataactt
caacttctgggagtcaaacagagacaacagcaatagcctaaattgcttta
ggggtcttttggactcctgtgatcaaaaactttaatggaggtttttcatg
cctggtgttataattttgtagtctactgctcttggaggagtatcccaagt
ggcaaagcttcatttaaactataggtattttaacttccttttttgaatga
gacattttacaactatagcatatcactcatggtctcccaaaattcttgct
ctcacatatgaaacacattttccattgcattactttttccagcaccaaat
ataagtctaaaattcagaatttcctgtaaacaaaatatgaatgagacttg
ggcatgatttttctagaagaaaatttttctatacttttgagcctgtaata
tcaaatgttgggatagatatggaagagatatttctatttccaagcagaag
atatatttctattcccagactgttaaaaaagaaaaaaggaaataaaaagt
ccccaaagaagtataaattataatagaaaaaagacattaattcttggaaa
tgagattaatatatgttttctgccttctagtatagattgagcccccaaga
ctcctggaaacagtccttatgtttctaagagcgctatataatgcagacct
tactggttggactatttttccggaagctttcaaaagtggcatttcatgct
attgtttggaagtcttgggatatttaaatccactaaggattgcgccatga
aggcatatctctctctctctctctctctctctctctctctctctctctct
ctcact
gaattcagagtgtgcttattgaactatcccttacgcatttacttattcat
ggatgcatttctttttttcctgtactactgttaaatatgccaatcttctt
ccacccctatgctgttgtgatcacaataggtttgtaatatatttttatga
ggatgctaaaatgcccaaattcattttaagagaacaatattgccataatt
caaaacaaaccataaagatataaacatgaaacaaactctttgccaatatt
cctgatgaattaatatgcagggcttctctgatttaagggacccaagagct
agtgttagaaagaaatgtgcagaagaccagaaaatgccacagagagaagt
ttatgactttaataacttcactttttctatttctttacttggtggcccac
tatagaaagataccatcagaaaatatttaaatgcctttatggccaatctc
taagcacaatcatagaataataaaattctaattcatacatatgtggcatt
ccttttctaaaactcatggtagcatgcttagtctcaacaacacctcaaaa
tttctaattctctacattcacacaccttcctacacattcctgtctctata
tggtcagagatccaagttctacctatattatgtacttccaacacttactc
ctacatcatcatctcctctatctgacattgaattaagctattcaaagaca
cctggcaacatttcagtctctgggatagtcagtctaaggaagtacagaga
ctcatgagtagggaaatcatatgacaaatatacagttaactttaaaagaa
atatagtatgtatgttataatggatgtatcaaccaactttccctatggct
ccaattgatcaagggactatctatttgctgcactgcaggttacatctagg
agacatttcaagttaggaaccatgaagttgcctttttccttctgtttaat
tcaaggtaagtagaacatctcatatttcctttactaatgaagtctaaagt
taaagaggaccacttgcattgtatagatgtctctgcaactcaatttagtc
tcactcatctctgaaatggagaatggatattccttagctcagagcattga
ggacttagtgcaaagaagactgtaaaaggcactcttaactggtaaggcac
ttttatttcaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_94587286_94588141
seq2: B6Ng01-235I11.b_48_903

seq1  GAATTCAGTGTCCTAGTTGCATGGTGTCTTTAGCAATAGGGACATAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTCCTAGTTGCATGGTGTCTTTAGCAATAGGGACATAACTT  50

seq1  CAACTTCTGGGAGTCAAACAGAGACAACAGCAATAGCCTAAATTGCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTGGGAGTCAAACAGAGACAACAGCAATAGCCTAAATTGCTTTA  100

seq1  GGGGTCTTTTGGACTCCTGTGATCAAAAACTTTAATGGAGGTTTTTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTTTGGACTCCTGTGATCAAAAACTTTAATGGAGGTTTTTCATG  150

seq1  CCTGGTGTTATAATTTTGTAGTCTACTGCTCTTGGAGGAGTATCCCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGTTATAATTTTGTAGTCTACTGCTCTTGGAGGAGTATCCCAAGT  200

seq1  GGCAAAGCTTCATTTAAACTATAGGTATTTTAACTTCCTTTTTTGAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCTTCATTTAAACTATAGGTATTTTAACTTCCTTTTTTGAATGA  250

seq1  GACATTTTACAACTATAGCATATCACTCATGGTCTCCCAAAATTCTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTACAACTATAGCATATCACTCATGGTCTCCCAAAATTCTTGCT  300

seq1  CTCACATATGAAACACATTTTCCATTGCATTACTTTTTCCAGCACCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATATGAAACACATTTTCCATTGCATTACTTTTTCCAGCACCAAAT  350

seq1  ATAAGTCTAAAATTCAGAATTTCCTGTAAACAAAATATGAATGAGACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCTAAAATTCAGAATTTCCTGTAAACAAAATATGAATGAGACTTG  400

seq1  GGCATGATTTTTCTAGAAGAAAATTTTTCTATACTTTTGAGCCTGTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGATTTTTCTAGAAGAAAATTTTTCTATACTTTTGAGCCTGTAATA  450

seq1  TCAAATGTTGGGATAGATATGGAAGAGATATTTCTATTTCCAAGCAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTTGGGATAGATATGGAAGAGATATTTCTATTTCCAAGCAGAAG  500

seq1  ATATATTTCTATTCCCAGACTGTTAAAAAAGAAAAAAGGAAATAAAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCTATTCCCAGACTGTTAAAAAAGAAAAAAGGAAATAAAAAGT  550

seq1  CCCCAAAGAAGTATAAATTATAATAGAAAAAAGACATTAATTCTTGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGAAGTATAAATTATAATAGAAAAAAGACATTAATTCTTGGAAA  600

seq1  TGAGATTAATATATGTTTTCTGCCTTCTAGTATAGATTGAGCCCCCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTAATATATGTTTTCTGCCTTCTAGTATAGATTGAGCCCCCAAGA  650

seq1  CTCCTGGAAACAGTCCTTATGTTTCTAAGAGCGCTATATAATGCAGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGAAACAGTCCTTATGTTTCTAAGAGCGCTATATAATGCAGACCT  700

seq1  TACTGGTTGGACTATTTTTCCGGAAGCTTTCAAAAGTGGCATTTCATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTTGGACTATTTTTCCGGAAGCTTTCAAAAGTGGCATTTCATGCT  750

seq1  ATTGTTTGGAAGTCTTGGGATATTTAAATCCACTAAGGATTGCGCCATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGGAAGTCTTGGGATATTTAAATCCACTAAGGATTGCGCCATGA  800

seq1  AGGCATATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  850

seq1  CTCTCT  856
      ||| ||
seq2  CTCACT  856

seq1: chrX_94703669_94704838
seq2: B6Ng01-235I11.g_67_1230 (reverse)

seq1  ATTTTGA---ATAAGTGCCTCA-CAGTTTAGAGTGCTTTTTACAGTTCTT  46
      |||||||   | |||||||| | ||||| ||||||| |||||||| ||||
seq2  ATTTTGAAATAAAAGTGCCTTACCAGTTAAGAGTGCCTTTTACAG-TCTT  49

seq1  CTTTTCACTAAGTCCTTCAAATGCTCTGAAGGCT-AGGAATATCCA-TCT  94
      |||| |||||||||||   ||||||||||  ||| ||||||||||| |||
seq2  CTTTGCACTAAGTCCT--CAATGCTCTGA--GCTAAGGAATATCCATTCT  95

seq1  CCATTTTTCAGAAGAATGAAGTGAGACTAAAATGAGTTGCAGAGACAATC  144
      |||  |||||||   ||| |||||||||||| |||||||||||||| |||
seq2  CCA--TTTCAGA--GATG-AGTGAGACTAAATTGAGTTGCAGAGAC-ATC  139

seq1  TATAACAATGCAAGTGGTCCTCTTTAACTTTAGACTTCATTAGTAAAGGA  194
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAT-ACAATGCAAGTGGTCCTCTTTAACTTTAGACTTCATTAGTAAAGGA  188

seq1  AATATGAGATGTTCCTACTTACCTTGAATTAACAGGAAGGAAAAAGGCAA  244
      ||||||||||||| ||||||||||||||||||   |||||||||||||||
seq2  AATATGAGATGTT-CTACTTACCTTGAATTAAACAGAAGGAAAAAGGCAA  237

seq1  CTTCATGGTTCCTAACTTGAAATGTCTCCTAGATGTAACCTGCAGTGCAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGTTCCTAACTTGAAATGTCTCCTAGATGTAACCTGCAGTGCAG  287

seq1  C-AATAGATAGTCCCTTGATCAATTGGAGCCATAGGGAAAGTTGGTTGAT  343
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGATAGTCCCTTGATCAATTGGAGCCATAGGGAAAGTTGGTTGAT  337

seq1  ACATCCATTATAACATACATACTATATTTCTTTTAAAGTTAACTGTATAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATTATAACATACATACTATATTTCTTTTAAAGTTAACTGTATAT  387

seq1  TTGTCATATGATTTCCCTACTCATGAGTCTCTGTACTTCCTTAGACTGAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATATGATTTCCCTACTCATGAGTCTCTGTACTTCCTTAGACTGAC  437

seq1  TATCCCAGAGACTGAAATGTTGCCAGGTGTCTTTGAATAGCTTAATTCAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGAGACTGAAATGTTGCCAGGTGTCTTTGAATAGCTTAATTCAA  487

seq1  TGTCAGATAGAGGAGATGATGATGTAGGAGTAAGTGTTGGAAGTACATAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATAGAGGAGATGATGATGTAGGAGTAAGTGTTGGAAGTACATAA  537

seq1  TATAGGTAGAACTTGGATCTCTGACCATATAGAGACAGGAATGTGTAGGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTAGAACTTGGATCTCTGACCATATAGAGACAGGAATGTGTAGGA  587

seq1  AGGTGTGTGAATGTAGAGAATTAGAAATTTTGAGGTGTTGTTGAGACTAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTGAATGTAGAGAATTAGAAATTTTGAGGTGTTGTTGAGACTAA  637

seq1  GCATGCTACCATGAGTTTTAGAAAAGGAATGCCACATATGTATGAATTAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTACCATGAGTTTTAGAAAAGGAATGCCACATATGTATGAATTAG  687

seq1  AATTTTATTATTCTATGATTGTGCTTAGAGATTGGCCATAAAGGCATTTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATTATTCTATGATTGTGCTTAGAGATTGGCCATAAAGGCATTTA  737

seq1  AATATTTTCTGATGGTATCTTTCTATAGTGGGCCACCAAGTAAAGAAATA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCTGATGGTATCTTTCTATAGTGGGCCACCAAGTAAAGAAATA  787

seq1  GAAAAAGTGAAGTTATTAAAGTCATAAACTTCTCTCTGTGGCATTTTCTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTGAAGTTATTAAAGTCATAAACTTCTCTCTGTGGCATTTTCTG  837

seq1  GTCTTCTGCACATTTCTTTCTAACACTAGCTCTTGGGTCCCTTAAATCAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGCACATTTCTTTCTAACACTAGCTCTTGGGTCCCTTAAATCAG  887

seq1  AGAAGCCCTGCATATTAATTCATCAGGAATATTGGCAAAGAGTTTGTTTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCTGCATATTAATTCATCAGGAATATTGGCAAAGAGTTTGTTTC  937

seq1  ATGTTTATATCTTTATGGTTTGTTTTGAATTATGGCAATATTGTTCTCTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATATCTTTATGGTTTGTTTTGAATTATGGCAATATTGTTCTCTT  987

seq1  AAAATGAATTTGGGCATTTTAGCATCCTCATAAAAATATATTACAAACCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAATTTGGGCATTTTAGCATCCTCATAAAAATATATTACAAACCT  1037

seq1  ATTGTGATCACAACAGCATAGGGGTGGAAGAAGATTGGCATATTTAACAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATCACAACAGCATAGGGGTGGAAGAAGATTGGCATATTTAACAG  1087

seq1  TAGTACAGGAAAAAAAGAAATGCATCCATGAATAAGTAAATGCGTAAGGG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAGGAAAAAAAGAAATGCATCCATGAATAAGTAAATGCGTAAGGG  1137

seq1  ATAGTTCAATAAGCACACTCTGAATTC  1170
      |||||||||||||||||||||||||||
seq2  ATAGTTCAATAAGCACACTCTGAATTC  1164