BAC Information

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BAC

Clone NameB6Ng01-236I01
ChromosomeX (Build37)
Map Location 110,573,279 - 110,682,154
singlet/doubletdoublet
Overlap geneDach2
Upstream geneEG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918
Downstream geneLOC237016, EG664945, EG634881, LOC100039201, Klhl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236I01.bB6Ng01-236I01.g
ACCGA047705GA047706
length1,1071,115
definitionB6Ng01-236I01.b B6Ng01-236I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,681,030 - 110,682,154)(110,573,279 - 110,574,400)
sequence
gaattctagtagaactcttttattttatattataatgcaagaggcaaaat
ttactaatctagattaatgaaataaacactaatgtggcacaatcaaatac
aaattgagagaatactcaattaaaaagaatactctcagaaaaaaaagaag
catgcatcaatggcatttgtgtgtatgaatgtgtacttgttaatgtgttt
gaacttcagttcacactcacaggtggaagccaagccacagttcaatgttg
gatgtcttgctcaaccacttttgaccctattgcttgagacatggtctctc
ccttaaagctagctagaaaatcaaaggattctcttcactctactatacca
atgctggaattccaggaatagatcaccatacttggctttttttaaatccc
tatttaaggatggacctgagatactcatacttgaatgggaagcaatctgc
cagctcagtcataaaatacttaatgtcagcatttgagcatcattttgaat
attttataaaaacatcaatttttgatcaataagtatttatatcataagaa
ctcttaagaatttgcccatactggatatgaatttaaatgagttcaaaata
ttattcaaaatatacactttatgaaaaagggcatttcaaacattttatca
ttaccatgacaataacacacctatacctctttctttggataaataaaaaa
gacaggatatacagtgttttctgatttttaagagggattttttcattcct
tttcttcttttttttttttgcttttaaatttttttattaggtattttcct
cgtttacattttcaatgctatccaaaggtcccccacatccaccccccaat
cccctacccacttttatcagatattttcttcatttacattttaaatacta
tccaggaagtcccctatatcctcccccgaccctgctccccaacccaaaca
ctccctcttctggccctggcattcccctgtactggggcatatgatctcac
agacaggcctctcctcccattgatgcgaatagcatctctgctatatatgc
actagagaccagctctggggggtactgttagtcatattgtgtcctcctat
aggttgc

gaattcatataaaaacaaataagtacatgtttctctaatgtagttttttt
aagtccataattcgttttacaaatttttccgttagtatcaaataattaaa
aaaaatacaggaacctaatactcgttgaacattttaaatgtatggtattt
ttattcaccacttttagaactgtttatttaaatcttcctcaattttttat
ttacattccaaatgtttccccccttcctggttctccctccctgagttctt
caccccatctcccctcctcaccacaccactgaaagggtgatcccttcttt
acctgttcaaccctccccccaccaccatcaatgaacttttttttttttta
gggtttgcccaactaccaccagaggttgcctgtttccattctttatgttg
gtcctcatggcttcagtcctgtttccccctaatacctgatcaggttcctt
tttcccttccctgtcctctctcccacccatgtccctccctccctccccct
tcctgtgatttctttcttctcctctgaagtaggattgaggcatccttacg
tgggcctgcccttctgcttgttaatcttcttgagttctgaggattgtatc
ctgggtattctgtactttttgtctaatacccatttatgagtgataacata
ccttcatgtcctcttgggtctgagttatctcactcaggatgatattttct
atttctgtccatttgcctgcaaaactcatgatgtccttgttctttttttc
ttttttaactgtaatttttgtgggatattttctttgtttacatgtcaaat
gttatcaatttcctggtcatccccgaaaccttctatcccgtctcccctcc
ccctgcttctatgagagtgttcccccacacacccattcactccttccgcc
ctaccctggcgttccactaacactgggacatccagtcttcacaggaccaa
gggcctttctgcccattgatgcccaacaagccatcctctgctacatatgc
aggggagccatggttactctttgattggagtttagtcctaggagctctgg
gggatctgtggttgaatatgtgttttccctactggatggaatcccttcag
gctctcaagtctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_110681030_110682154
seq2: B6Ng01-236I01.b_43_1149 (reverse)

seq1  GCAACCCTATAGGAGGAACAACAATATGAACTAACAAGTACCCCCCAGAG  50
      |||| ||||||||||||   |||||||| |||||| ||||||||||||||
seq2  GCAA-CCTATAGGAGGA--CACAATATG-ACTAAC-AGTACCCCCCAGAG  45

seq1  CTGTGTCTCTAGTTGCATATATAGCAGAGGATGGCCTATTCGGCCATCAA  100
      ||| |||||||| ||||||||||||||| ||||  |||||||  ||||||
seq2  CTG-GTCTCTAG-TGCATATATAGCAGA-GATG--CTATTCG--CATCAA  88

seq1  TGGGAGGAGAGGCCCTTGGTCTTGTGAAGATCATATGCCCCAGTACAGGG  150
      ||||||||||||||    ||| |||| |||||||||||||||||||||||
seq2  TGGGAGGAGAGGCC---TGTC-TGTG-AGATCATATGCCCCAGTACAGGG  133

seq1  GAATGCCAGGGCCAAGAAGAGGGAGTGTTTGGGTTGGGGAGCAGGGTCGG  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATGCCAGGGCC-AGAAGAGGGAGTGTTTGGGTTGGGGAGCAGGGTCGG  182

seq1  GGGAGGATATAGGGGACTTCCTGGATAGTATTTAAAATGTAAATGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGATATAGGGGACTTCCTGGATAGTATTTAAAATGTAAATGAAGAA  232

seq1  AATATCTGATAAAAGTGGGTAGGGGATTGGGGGGTGGATGTGGGGGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTGATAAAAGTGGGTAGGGGATTGGGGGGTGGATGTGGGGGACCT  282

seq1  TTGGATAGCATTGAAAATGTAAACGAGGAAAATACCTAATAAAAAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAGCATTGAAAATGTAAACGAGGAAAATACCTAATAAAAAAATTT  332

seq1  AAAAGCAAAAAAAAAAAAGAAGAAAAGGAATGAAAAAATCCCTCTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAAAAAAAAAAGAAGAAAAGGAATGAAAAAATCCCTCTTAAAA  382

seq1  ATCAGAAAACACTGTATATCCTGTCTTTTTTATTTATCCAAAGAAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAACACTGTATATCCTGTCTTTTTTATTTATCCAAAGAAAGAGG  432

seq1  TATAGGTGTGTTATTGTCATGGTAATGATAAAATGTTTGAAATGCCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTGTGTTATTGTCATGGTAATGATAAAATGTTTGAAATGCCCTTT  482

seq1  TTCATAAAGTGTATATTTTGAATAATATTTTGAACTCATTTAAATTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAGTGTATATTTTGAATAATATTTTGAACTCATTTAAATTCATA  532

seq1  TCCAGTATGGGCAAATTCTTAAGAGTTCTTATGATATAAATACTTATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATGGGCAAATTCTTAAGAGTTCTTATGATATAAATACTTATTGA  582

seq1  TCAAAAATTGATGTTTTTATAAAATATTCAAAATGATGCTCAAATGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATTGATGTTTTTATAAAATATTCAAAATGATGCTCAAATGCTGA  632

seq1  CATTAAGTATTTTATGACTGAGCTGGCAGATTGCTTCCCATTCAAGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTATTTTATGACTGAGCTGGCAGATTGCTTCCCATTCAAGTATG  682

seq1  AGTATCTCAGGTCCATCCTTAAATAGGGATTTAAAAAAAGCCAAGTATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCAGGTCCATCCTTAAATAGGGATTTAAAAAAAGCCAAGTATGG  732

seq1  TGATCTATTCCTGGAATTCCAGCATTGGTATAGTAGAGTGAAGAGAATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTATTCCTGGAATTCCAGCATTGGTATAGTAGAGTGAAGAGAATCC  782

seq1  TTTGATTTTCTAGCTAGCTTTAAGGGAGAGACCATGTCTCAAGCAATAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTCTAGCTAGCTTTAAGGGAGAGACCATGTCTCAAGCAATAGG  832

seq1  GTCAAAAGTGGTTGAGCAAGACATCCAACATTGAACTGTGGCTTGGCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAGTGGTTGAGCAAGACATCCAACATTGAACTGTGGCTTGGCTTC  882

seq1  CACCTGTGAGTGTGAACTGAAGTTCAAACACATTAACAAGTACACATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGAGTGTGAACTGAAGTTCAAACACATTAACAAGTACACATTCA  932

seq1  TACACACAAATGCCATTGATGCATGCTTCTTTTTTTTCTGAGAGTATTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAAATGCCATTGATGCATGCTTCTTTTTTTTCTGAGAGTATTCT  982

seq1  TTTTAATTGAGTATTCTCTCAATTTGTATTTGATTGTGCCACATTAGTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGAGTATTCTCTCAATTTGTATTTGATTGTGCCACATTAGTGT  1032

seq1  TTATTTCATTAATCTAGATTAGTAAATTTTGCCTCTTGCATTATAATATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATTAATCTAGATTAGTAAATTTTGCCTCTTGCATTATAATATA  1082

seq1  AAATAAAAGAGTTCTACTAGAATTC  1125
      |||||||||||||||||||||||||
seq2  AAATAAAAGAGTTCTACTAGAATTC  1107


seq1: chrX_110573279_110574400
seq2: B6Ng01-236I01.g_64_1178

seq1  GAATTCATATAAAAACAAATAAGTACATGTTTCTCTAATGTAGTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAAAAACAAATAAGTACATGTTTCTCTAATGTAGTTTTTTT  50

seq1  AAGTCCATAATTCGTTTTACAAATTTTTCCGTTAGTATCAAATAATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATAATTCGTTTTACAAATTTTTCCGTTAGTATCAAATAATTAAA  100

seq1  AAAAATACAGGAACCTAATACTCGTTGAACATTTTAAATGTATGGTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACAGGAACCTAATACTCGTTGAACATTTTAAATGTATGGTATTT  150

seq1  TTATTCACCACTTTTAGAACTGTTTATTTAAATCTTCCTCAATTTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACCACTTTTAGAACTGTTTATTTAAATCTTCCTCAATTTTTTAT  200

seq1  TTACATTCCAAATGTTTCCCCCCTTCCTGGTTCTCCCTCCCTGAGTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCCAAATGTTTCCCCCCTTCCTGGTTCTCCCTCCCTGAGTTCTT  250

seq1  CACCCCATCTCCCCTCCTCACCACACCACTGAAAGGGTGATCCCTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCATCTCCCCTCCTCACCACACCACTGAAAGGGTGATCCCTTCTTT  300

seq1  ACCTGTTCAACCCTCCCCCCACCACCATCAATGAACTTTTTTTTTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTCAACCCTCCCCCCACCACCATCAATGAACTTTTTTTTTTTTTA  350

seq1  GGGTTTGCCCAACTACCACCAGAGGTTGCCTGTTTCCATTCTTTATGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGCCCAACTACCACCAGAGGTTGCCTGTTTCCATTCTTTATGTTG  400

seq1  GTCCTCATGGCTTCAGTCCTGTTTCCCCCTAATACCTGATCAGGTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCATGGCTTCAGTCCTGTTTCCCCCTAATACCTGATCAGGTTCCTT  450

seq1  TTTCCCTTCCCTGTCCTCTCTCCCACCCATGTCCCTCCCTCCCTCCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCCCTGTCCTCTCTCCCACCCATGTCCCTCCCTCCCTCCCCCT  500

seq1  TCCTGTGATTTCTTTCTTCTCCTCTGAAGTAGGATTGAGGCATCCTTACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGATTTCTTTCTTCTCCTCTGAAGTAGGATTGAGGCATCCTTACG  550

seq1  TGGGCCTGCCCTTCTGCTTGTTAATCTTCTTGAGTTCTGAGGATTGTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGCCCTTCTGCTTGTTAATCTTCTTGAGTTCTGAGGATTGTATC  600

seq1  CTGGGTATTCTGTACTTTTTGTCTAATACCCATTTATGAGTGATAACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTATTCTGTACTTTTTGTCTAATACCCATTTATGAGTGATAACATA  650

seq1  CCTTCATGTCCTCTTGGGTCTGAGTTATCTCACTCAGGATGATATTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGTCCTCTTGGGTCTGAGTTATCTCACTCAGGATGATATTTTCT  700

seq1  ATTTCTGTCCATTTGCCTGCAAAACTCATGATGTCCTTGTTCTTTTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTCCATTTGCCTGCAAAACTCATGATGTCCTTGTTCTTTTTTTC  750

seq1  TTTTTTAACTGTAATTTTTGTGGGATATTTTCTTTGTTTACATGTCAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAACTGTAATTTTTGTGGGATATTTTCTTTGTTTACATGTCAAAT  800

seq1  GTTATCAATTTCCTGGTCATCCCCGAAACCTTCTATCCCGTCTCCCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAATTTCCTGGTCATCCCCGAAACCTTCTATCCCGTCTCCCCTCC  850

seq1  CCCTGCTTCTATGAGAGTGTTCCCCCACACACCCATTCACTCCTTCCGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTCTATGAGAGTGTTCCCCCACACACCCATTCACTCCTTCCGCC  900

seq1  CTACCCTGGCGTTCCACT-ACACTGGGACATCCAGTCTTCACAGGACCAA  949
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTACCCTGGCGTTCCACTAACACTGGGACATCCAGTCTTCACAGGACCAA  950

seq1  GGGCCTTTCTGCCCATTGATGCCCAACAAGGCCATCCTCTGCTACATATG  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGCCTTTCTGCCCATTGATGCCCAACAA-GCCATCCTCTGCTACATATG  999

seq1  CAGGGGGAGCCATGGGTACTCTTTGATTGGAGGTTTAGTCCCTAGGAGCT  1049
      || |||||||||||| ||||||||||||||| ||||||| ||||||||||
seq2  CA-GGGGAGCCATGGTTACTCTTTGATTGGA-GTTTAGT-CCTAGGAGCT  1046

seq1  CTGGGGGATCTGGTTGTTTGATATTGTTGTTTTTCCTACTGGTTGAAAAT  1099
      ||||||||||||  || |||| ||   |||||| |||||||| ||  |||
seq2  CTGGGGGATCTG--TGGTTGA-ATATGTGTTTTCCCTACTGGATG-GAAT  1092

seq1  CCCTTCAGCTCCTTCAGTCTCTA  1122
      ||||||||   ||  ||||||||
seq2  CCCTTCAGGCTCTCAAGTCTCTA  1115


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