BAC Information

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BAC

Clone NameB6Ng01-238K06
ChromosomeX (Build37)
Map Location 95,497,526 - 95,498,325
singlet/doubletsinglet
Overlap geneAr
Upstream geneEda2r, LOC668244
Downstream geneLOC100042324, Ophn1, Yipf6, LOC100042932, Stard8, LOC436219, Efnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238K06.bB6Ng01-238K06.g
ACCGA049281GA049282
length1,1021,220
definitionB6Ng01-238K06.b B6Ng01-238K06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctctgtatatctgctggcctcttctcttaaatctacctgcctc
tgcctcccaagtgctgtggtaaaggcatgccccaccactgcccggacaca
gaaagaaattttttttttgcctgctgcgaatactgaaaacctacctccta
tgcctggcctgcccctgcgcattccccgggtaacctcctcaatataattg
ccctgcctctaaccttatcttatcctgttctttagatccctcttgctcgc
ctttccgttaacctttcctcctttatgggggcgcggggggtttctgttta
ggcagagaactgagtattttcatacgtttttgattctctatttccagatg
tgatgctagctactaaattccattgtcaggaatgaagattatggtcaaag
gagataatactttagggatttagactccttggagaagccacatgacaaag
aacagagaatgtgaattttgtagctaaaggaggttcagattattgggatt
attttacctaaattcaagactagaaaataccagtcataaggatgtgattt
atctgggaactgtaccaggggcattctggaggcatcatcagtttgctgtg
ctatgcacaagacccagtgtaagaaatggattcatcaactatcaaaacat
tgggagtgccagcctctcagtttgaaaggagataggctgggttcatatca
gaccccaatcctcatgtctttaatgggaggtaaaagttggcatggctaaa
catatctctttattactggctgcgcccaaatcctatagaaatcattgttg
ggaaaacatcatcttgcagtcagggttgggttccaagacttcctttttat
tttccttcttttcttctcaaagcttctctctgttctaggtgtttatgcaa
acatgcaatttactattacattgatttacttagttagattatgatagagt
ttacagtaaggatcttactttttctaattaagggcttaaggtcctgtttc
tagattaatgtcattttttctttggagcctaaaggcagtagggttttttt
aatcacattttaatacacttatctttggaggatcagccttcctctttatt
tt
gaattctcacccgaagctggcaagggccattctctttcccaccaccatgt
ctgacaacgtttatcatcactataatgcattcccccccacccctgataat
ccaccaacaccccaggaaaggggaatagatcattctggagccaaatatga
aatgctggggtgtgtgagcacaagtacgaacactcctttcttgtgggtgg
gattgttcgtggggttttatactctcgaaatcaatctggctgttcctcaa
aatgctggatgaactccttggtgaggatgtgaggtacctcttctgggcac
tgtccgaaaaatgggtatcatcctctcaggacacatgctagctatgttca
ttgcacctttataccttgtttccaaaatctggaaagaaggaggatgggga
gggggaaggaatggatacagaaaatgtggtacatctacacaatggagtac
tactcagctattaaaaagaatgaatttatgaaattcctagccaaatggat
ggacctggagggcatcatcctgagtaaggtaacacattcacaaaggaact
cacacaatatgtactcactgataagtggatattagcccaaaacctaggat
atccaagatataagatacaatttcctaatcacatgaaactcaagaaaaat
gaagactgaagtgtggacactatgccccttcttagaagtgggaacaaaac
acccttggaaggaggtacagagacaaagtttgggagctgagataaaaaga
tggaccatgtagagactgccatatcccggggatctatcccataatcagct
tccaaatgctgacaccattgcatacactagcaagattatgctgaaaggac
cctgatatagctgtctcttgtcagagtatgccttgggcctagcaacatag
aagtggaatgctccaccagtcggctaattgggatggattacattggcccc
caaattgaagagctagaagaaaagtacccaatgaagcttaaaggaatcct
gcaaactccttataggttgaacaacatatgaacctaaccaagttacttcg
gagctcttgaactcctagctgccaattgaatcaaaagatggccatagctc
ggctcatctcactgaaaagaacaagtccattggaaccttccaacctttaa
tttgccagattcaaaggcgacgtcatatgctcaaatagagcgggcgatcg
cgtcgcatgttgcgtcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_95497526_95498325
seq2: B6Ng01-238K06.b_327_1139

seq1  GTTTCTGTTTAGGCAGAGAACTGAGTATTTTCATACGTTTTTGATTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTTTAGGCAGAGAACTGAGTATTTTCATACGTTTTTGATTCTCT  50

seq1  ATTTCCAGATGTGATGCTAGCTACTAAATTCCATTGTCAGGAATGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGATGTGATGCTAGCTACTAAATTCCATTGTCAGGAATGAAGAT  100

seq1  TATGGTCAAAGGAGATAATACTTTAGGGATTTAGACTCCTTGGAGAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCAAAGGAGATAATACTTTAGGGATTTAGACTCCTTGGAGAAGCC  150

seq1  ACATGACAAAGAACAGAGAATGTGAATTTTGTAGCTAAAGGAGGTTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAAAGAACAGAGAATGTGAATTTTGTAGCTAAAGGAGGTTCAGA  200

seq1  TTATTGGGATTATTTTACCTAAATTCAAGACTAGAAAATACCAGTCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGGATTATTTTACCTAAATTCAAGACTAGAAAATACCAGTCATAA  250

seq1  GGATGTGATTTATCTGGGAACTGTACCAGGGGCATTCTGGAGGCATCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGATTTATCTGGGAACTGTACCAGGGGCATTCTGGAGGCATCATC  300

seq1  AGTTTGCTGTGCTATGCACAAGACCCAGTGTAAGAAATGGATTCATCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTGTGCTATGCACAAGACCCAGTGTAAGAAATGGATTCATCAAC  350

seq1  TATCAAAACATTGGGAGTGCCAGCCTCTCAGTTTGAAAGGAGATAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAACATTGGGAGTGCCAGCCTCTCAGTTTGAAAGGAGATAGGCTG  400

seq1  GGTTCATATCAGACCCCAATCCTCATGTCTTTAATGGGAGGTAAAAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATATCAGACCCCAATCCTCATGTCTTTAATGGGAGGTAAAAGTTG  450

seq1  GCAATGGCTAAACATATCTCTTTATTACTGGCTGCGCCCAAATCCTATAG  500
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-ATGGCTAAACATATCTCTTTATTACTGGCTGCGCCCAAATCCTATAG  499

seq1  AAATCATTGTT-GGAAAACATCATCTTGCAGTCAGGGTTGGGTTCCAAGA  549
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTGTTGGGAAAACATCATCTTGCAGTCAGGGTTGGGTTCCAAGA  549

seq1  CTTCCTTTTTATTTTCCTTCTTTTCTTCTCAAAGCTTCTCTCTGTTCTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTTATTTTCCTTCTTTTCTTCTCAAAGCTTCTCTCTGTTCTAG  599

seq1  GTGTTTATGCAAACATGCAATTTACTATTACATTGATTTACTTAGTAAGA  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGTTTATGCAAACATGCAATTTACTATTACATTGATTTACTTAGTTAGA  649

seq1  TTATGATAGAGTTTACAGTAAAGATCTTAC-TTTTCTAATT-AGGGCTTA  697
      ||||||||||||||||||||| |||||||| |||||||||| ||||||||
seq2  TTATGATAGAGTTTACAGTAAGGATCTTACTTTTTCTAATTAAGGGCTTA  699

seq1  AGGT-CTG-TTCTAGAT--ATGTCA-TTTTTCTTTGGAGCC-AAAAGCAG  741
      |||| ||| ||||||||  |||||| ||||||||||||||| ||| ||||
seq2  AGGTCCTGTTTCTAGATTAATGTCATTTTTTCTTTGGAGCCTAAAGGCAG  749

seq1  TAGGGTTTTTTAAATCACATTT--ATACAC-TATCTTTGAGGGATCAGC-  787
      ||||||||||| ||||||||||  |||||| ||||||||  |||||||| 
seq2  TAGGGTTTTTTTAATCACATTTTAATACACTTATCTTTGGAGGATCAGCC  799

seq1  -TTCTCTTTATTTT  800
       | |||||||||||
seq2  TTCCTCTTTATTTT  813