BAC Information

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BAC

Clone NameB6Ng01-238L08
ChromosomeX (Build37)
Map Location 89,127,718 - 89,231,333
singlet/doubletdoublet
Overlap geneLOC674396, EG278087
Upstream geneLOC100041815, Gm44, LOC670074, LOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484
Downstream geneMageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238L08.bB6Ng01-238L08.g
ACCGA049333GA049334
length1,146558
definitionB6Ng01-238L08.b B6Ng01-238L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,127,718 - 89,128,870)(89,230,765 - 89,231,333)
sequence
gaattcttaggcaaatggatggatctgtaggatatcatcctgagtgaagt
aactcaatcccaaaagaccacacatgatatgcactcactgataagcagat
attagcccagaaacttagaatagccaagatgcattttgcaaaacacatga
aactcaagaagaatgaagaccaaagtgtggatacttagttcattcttaga
atggagaacaaaatacccatggaaggatttactgagacaaagttcggaac
tgaaatgaaaggaaggaccatccaggcagatttttaaacaatccattcct
tactgtgtttaataatttctaacaacacaattttctcaacaaattttatt
gtttatatttaaatagtacagcatggcatgtggtaaaatatttttatatt
aaaatgatgtgaaagactgaatgcaggtaatggataggacttataaaaga
tgacaaaaagataacagtttttataattctgcttctgccaagaaagtttt
gggttttgttgtgcataaatacataaaagtacatttgatggtgaaggcat
aaaaccccatctgaagctttacagattcataatggctatatagaagctca
ctgagatgtatacactttgggcctggctaattttggcatctgacatattt
ttatttgtactttttataccaaagcttataaaaaataaatgtaatatgta
atctataatgtataatgattgtaacattggaacacttcgacaacttttca
gactttgttttaaatctattaaaataatgtagataaattgtacttcacca
aaaatgttgaacacttgtgtcatatgagtaacaagtagccataggtgagt
atttaatgattatccattgaagaaatgaattttgaaatgtccatagacaa
ttactacaatgggtaatgtaaaaatattactttactaatgttttatgaat
atttaatgtcactggataaatactggaaaagtaaaattgttttaagttta
aacctcactatcatgttcagaagcaagaatgtcttaaatttttactggaa
acaaacatatacacgatccactatatttacatagaagctatacctgtaat
acataatatggaggatgcttcacatccttaataatttcatagctta
ctgaattgattaaaataattttaggaagcttaggatacatatatatgtat
gtgtgtatatatatatatatatatatatatatatatatatatatatatat
atgtcgatatatatatatgtgtgtgggtatatgtgaaatatatatgatac
tagaggaatatatgtgtgtggtggttggggtcaaccgaatgtgtgggggg
ggggggtgtgagtctgtgaatactgactgtgtaaagatttaaattatttt
ctttttcttttcttttctttctttctttcttttttttttttttttttttt
ttttttaatggttcaccaggagttaatgagtccaagccccttccctggtc
tgcaaaaggctccttggcattaaagaaataaactctaccaattaatcctt
tacttaattccctgctgctgccagcatgacttaattacaaaatgcatatc
tgtctgtctttctgcacatatgttcacttaagagttaaaagaattcaaaa
tttcttgctgggcattcttgccagcaccggatgattaagttttgttctat
cagtagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_89127718_89128870
seq2: B6Ng01-238L08.b_46_1191

seq1  GAATTCTTAGGCAAATGGATGGATCTGTAGGATATCATCCTGAGTGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGCAAATGGATGGATCTGTAGGATATCATCCTGAGTGAAGT  50

seq1  AACTCAATCCCAAAAGACCACACATGATATGCACTCACTGATAAGCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAATCCCAAAAGACCACACATGATATGCACTCACTGATAAGCAGAT  100

seq1  ATTAGCCCAGAAACTTAGAATAGCCAAGATGCATTTTGCAAAACACATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCCAGAAACTTAGAATAGCCAAGATGCATTTTGCAAAACACATGA  150

seq1  AACTCAAGAAGAATGAAGACCAAAGTGTGGATACTTAGTTCATTCTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGAAGAATGAAGACCAAAGTGTGGATACTTAGTTCATTCTTAGA  200

seq1  ATGGAGAACAAAATACCCATGGAAGGATTTACTGAGACAAAGTTCGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAACAAAATACCCATGGAAGGATTTACTGAGACAAAGTTCGGAAC  250

seq1  TGAAATGAAAGGAAGGACCATCCAGGCAGATTTTTAAACAATCCATTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAAAGGAAGGACCATCCAGGCAGATTTTTAAACAATCCATTCCT  300

seq1  TACTGTGTTTAATAATTTCTAACAACACAATTTTCTCAACAAATTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTTTAATAATTTCTAACAACACAATTTTCTCAACAAATTTTATT  350

seq1  GTTTATATTTAAATAGTACAGCATGGCATGTGGTAAAATATTTTTATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATTTAAATAGTACAGCATGGCATGTGGTAAAATATTTTTATATT  400

seq1  AAAATGATGTGAAAGACTGAATGCAGGTAATGGATAGGACTTATAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATGTGAAAGACTGAATGCAGGTAATGGATAGGACTTATAAAAGA  450

seq1  TGACAAAAAGATAACAGTTTTTATAATTCTGCTTCTGCCAAGAAAGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAAGATAACAGTTTTTATAATTCTGCTTCTGCCAAGAAAGTTTT  500

seq1  GGGTTTTGTTGTGCATAAATACATAAAAGTACATTTGATGGTGAAGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTGTTGTGCATAAATACATAAAAGTACATTTGATGGTGAAGGCAT  550

seq1  AAAACCCCATCTGAAGCTTTACAGATTCATAATGGCTATATAGAAGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCATCTGAAGCTTTACAGATTCATAATGGCTATATAGAAGCTCA  600

seq1  CTGAGATGTATACACTTTGGGCCTGGCTAATTTTGGCATCTGACATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGTATACACTTTGGGCCTGGCTAATTTTGGCATCTGACATATTT  650

seq1  TTATTTGTACTTTTTATACCAAAGCTTATAAAAAATAAATGTAATATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTACTTTTTATACCAAAGCTTATAAAAAATAAATGTAATATGTA  700

seq1  ATCTATAATGTATAATGATTGTAACATTGGAACACTTCGACAACTTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAATGTATAATGATTGTAACATTGGAACACTTCGACAACTTTTCA  750

seq1  GACTTTGTTTTAAATCTATTAAAATAATGTAGATAAATTGTACTTCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTTTTAAATCTATTAAAATAATGTAGATAAATTGTACTTCACCA  800

seq1  AAAATGTTGAACACTTGTGTCATATGAGTAACAAGTAGCCATAGGTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTGAACACTTGTGTCATATGAGTAACAAGTAGCCATAGGTGAGT  850

seq1  ATTTAATGATTATCCATTGAAGAAATGAATTTTGAAATGTCCATAGACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGATTATCCATTGAAGAAATGAATTTTGAAATGTCCATAGACAA  900

seq1  TTACTACAATGGGTAATGTAAAAATATTACTTTACTAAATGTTTATGAAT  950
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  TTACTACAATGGGTAATGTAAAAATATTACTTTACTAATGTTTTATGAAT  950

seq1  ATTTAATGTCACTGGATAAATAACTGG-AAAGTAAAAT--GTTTAAGTTT  997
      ||||||||||||||||||||| ||||| ||||||||||   |||||||||
seq2  ATTTAATGTCACTGGATAAAT-ACTGGAAAAGTAAAATTGTTTTAAGTTT  999

seq1  AAACCTCACTAATCATGTTCAGAAGCAGGAATGTCCTAAAATTTTTACTG  1047
      |||||||||| |||||||||||||||| |||||| || ||||||||||||
seq2  AAACCTCACT-ATCATGTTCAGAAGCAAGAATGT-CTTAAATTTTTACTG  1047

seq1  GAAACAAACATATACACAGATCCACTAATAATTTAACATAGAAGCTATAC  1097
      ||||||||||||||||| |||||||| |||  || |||||||||||||||
seq2  GAAACAAACATATACAC-GATCCACT-ATA--TTTACATAGAAGCTATAC  1093

seq1  TTGTAATACATAATATTGAGGATGCTTCAACAATCCTTAAATAAATTCAT  1147
       ||||||||||||||| ||||||||||||   |||||| ||||| |||||
seq2  CTGTAATACATAATATGGAGGATGCTTCA--CATCCTT-AATAATTTCAT  1140

seq1  AGCTTA  1153
      ||||||
seq2  AGCTTA  1146

seq1: chrX_89230765_89231333
seq2: B6Ng01-238L08.g_68_631 (reverse)

seq1  CACTACTGATAGAACAAAACTTAATCATCCGGTGCTGGCAAGAATGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTGATAGAACAAAACTTAATCATCCGGTGCTGGCAAGAATGCCCA  50

seq1  GCAAGAAACTCTGAACTCTTTTAACTCTTAAGTGAACATATGTGCAGAAA  100
      |||||||| | |||| ||||||||||||||||||||||||||||||||||
seq2  GCAAGAAATTTTGAATTCTTTTAACTCTTAAGTGAACATATGTGCAGAAA  100

seq1  GACAGACAGATATGCATTTTGTAATTAAGTCATGCTGGCAGCAGCAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGATATGCATTTTGTAATTAAGTCATGCTGGCAGCAGCAGGGA  150

seq1  ATTAAGTAAAGGATTAATTGGTAGAGTTTATTTCTCTAATGCCAAGGAGC  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTAAGTAAAGGATTAATTGGTAGAGTTTATTTCTTTAATGCCAAGGAGC  200

seq1  CTCTTGCAGACCAGGGAAGAGGCTTGGACTCATTAACTCCTGGTGAACCA  250
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTTTGCAGACCAGGGAAGGGGCTTGGACTCATTAACTCCTGGTGAACCA  250

seq1  TTAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAGAAA  300

seq1  AGAAAAAGAAAATAATTTAAATCTTTTACACAGGCAGTATTCACAGACTC  350
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  AGAAAAAGAAAATAATTTAAATC-TTTACACAGTCAGTATTCACAGACTC  349

seq1  ACATACACTCATATACACACATTCTGGTTGAACCCAACCACCTGTCTCAT  400
      |||  | | |     ||||||||| |||||| ||||||||||   | |||
seq2  ACA-CCCCCCCCCCCCACACATTC-GGTTGACCCCAACCACCACACACAT  397

seq1  CTATTCCACAAGTGTTCATGGATATTTTCACATATACCCACACACATATA  450
       |||||| | |||  ||||  ||| |||||||||||||||||||||||||
seq2  ATATTCCTCTAGT-ATCATATATA-TTTCACATATACCCACACACATATA  445

seq1  TATATATCGACATATATATATATATATATATATATATATATATATATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCGACATATATATATATATATATATATATATATATATATATATA  495

seq1  TATATATACACACATACATATATATGTATCCTAAGCTTCCTAAAATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACACACATACATATATATGTATCCTAAGCTTCCTAAAATTATT  545

seq1  TTAATCAATTCAGGAATTC  569
      |||||||||||||||||||
seq2  TTAATCAATTCAGGAATTC  564