BAC Information

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BAC

Clone NameB6Ng01-239B11
ChromosomeX (Build37)
Map Location 59,375,516 - 59,376,724
singlet/doubletsinglet
Overlap genenone
Upstream geneEG631990, LOC632000, LOC100039759, EG245440, LOC100039778, Ldoc1, LOC654353, EG627299, LOC666654
Downstream geneLOC385367, LOC671741, 4933402E13Rik, 4931400O07Rik, 1700019B21Rik, LOC671878, LOC666695, EG627420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239B11.bB6Ng01-239B11.g
ACCGA049612GA049613
length1,2001,192
definitionB6Ng01-239B11.b B6Ng01-239B11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccagggagtttataaaatgatctgattcagaccatcagggtag
aattatgcaaaagtaattccagcatgagtttaaacgcattttgccttaaa
gaaagaaaaaatgactaatgtcataaatttgaatagttatccctggacta
tgtctaatttggtttagctatattttatcagttcttcactcctaatattt
gtatttttgtatctgtttagctgtttatcagagctactttcttgtgatgt
tcatgacttgtattatctagtcatcctttcttgtgtgaatctgtatatat
tgtacaaatttcattgttatcttcatgtgtttctttggagactgggtctt
gctctgtagctatgtcttgtctgtaagatacttgctgtatagctccatag
tcgaagttagcttcacagtcacagcaatcttcttgtatttacatactgaa
agctgaagctacagatgtaggacaccatatcaggctttaacatcaaattt
tgtctgacttctcttgtattttgtttttgtttatctgagacagagtcttt
ctgtgtagtcctatactcgtagatgtcttgtaacctcatgtactttgatt
atttcataaactggatgtacaaatttgacatgtaaaatattatacatgca
taaacttattacttggattgcccatggttgtacacattcatgtgaaatct
tatactcaatatggatctctgaataaatctaactgtcttttaataacatt
gtttttttccacctgtggtgcatttgtcaaatttggagattttttcactg
tcacaacctggggtaaaatgaaatgggaatagaggaagtcctattggcat
ctagaaaatgcagtctaggaatgctgctatgttttaacaacttaaaaaca
gcacttcagggctggagagatggcttagcggtttagagcactgattgctc
ttccagaggtcctgagttcaattccagtaaccacatggtggctcacacca
tctgtcatggggatctgataccctcctctggtgtgcctgagagagccaca
ttttaaccacatacataaaataaaacacacttcatacagactacagtgtt
atctagcttaattatcattattcttttctgtcatttatcccacacacacc
caatgctgtgggtgcttgattttgttttcgtattaccgacaatataatat


gaattcatagatttttattcacatatacaattttatatgtatgtttgtag
atacgtgttttggtttgcttcctattgctgtgataaagaccatagcccaa
agcaacttgttcttgaaagagtcttcttcagtttacatatgctgatcaca
gtttattaagagaaattggggcagaaacagaagagaggcagctgagtgaa
ttcagaaacagaactagaggtcatgaataaaaaatggtttatggggttat
tcatgttttgctcagactactttcttttctttttctaaatctttccaatt
ttttattaggtattttcttcatttacatttcaaatgctatcctaaaagtc
ccctataccttcctaccaccctgctcccctacccacccactctcacttct
tggcccttgatcttgcaaaattcatatgccccagtacaggggaacaccag
actattttcttaaaagacctaggactacctgcccatgcctggcatcaccc
acattaggttggactcctgaacatcaatcattattctggaacatactggt
cacactcatggaggcattttctcaggtgaagttttcttttttcaagtgac
catagttgtgacaagttgaaaaaaaactaactaatggaattgaaatgtaa
aacaatcatattttaatgagcttgagagacatacttatttgcacatgtgc
aaatttaccaagaagagaatgactgagttaagaaaattagaaacaaaata
acaaaataaaaaggtgataaggctgaacataggacagtgaatatgaccaa
agatagtgacagtatgtaaagtgtagtttaaattattttaataaagattt
gtaaaatataaatacaaatataaatataaaacatctagaataaaggtgat
tccaacactgtcatgtgattttggtcacccacagaaaacagtctcctcta
tttacagtctgaacctgtgccctgagcagaaccttggagctggctccaca
ccccagtcccacaacacccagaggaagctttgactcctaaggttcctcta
acacacacagatcacagaagaacgccacaatatctgctcaacacccagag
gttatggattccacaggatcaaggaactcaggactcgctaatgattgaca
atggtccctcctatgtgtgtaaccctcatcatgaaaagcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_59375516_59376724
seq2: B6Ng01-239B11.b_46_1245

seq1  GAATTCACCAGGGAGTTTATAAAATGATCTGATTCAGACCATCAGGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGGGAGTTTATAAAATGATCTGATTCAGACCATCAGGGTAG  50

seq1  AATTATGCAAAAGTAATTCCAGCATGAGTTTAAACGCATTTTGCCTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCAAAAGTAATTCCAGCATGAGTTTAAACGCATTTTGCCTTAAA  100

seq1  GAAAGAAAAAATGACTAATGTCATAAATTTGAATAGTTATCCCTGGACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAAATGACTAATGTCATAAATTTGAATAGTTATCCCTGGACTA  150

seq1  TGTCTAATTTGGTTTAGCTATATTTTATCAGTTCTTCACTCCTAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATTTGGTTTAGCTATATTTTATCAGTTCTTCACTCCTAATATTT  200

seq1  GTATTTTTGTATCTGTTTAGCTGTTTATCAGAGCTACTTTCTTGTGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTGTATCTGTTTAGCTGTTTATCAGAGCTACTTTCTTGTGATGT  250

seq1  TCATGACTTGTATTATCTAGTCATCCTTTCTTGTGTGAATCTGTATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACTTGTATTATCTAGTCATCCTTTCTTGTGTGAATCTGTATATAT  300

seq1  TGTACAAATTTCATTGTTATCTTCATGTGTTTCTTTGGAGACTGGGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAATTTCATTGTTATCTTCATGTGTTTCTTTGGAGACTGGGTCTT  350

seq1  GCTCTGTAGCTATGTCTTGTCTGTAAGATACTTGCTGTATAGCTCCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTAGCTATGTCTTGTCTGTAAGATACTTGCTGTATAGCTCCATAG  400

seq1  TCGAAGTTAGCTTCACAGTCACAGCAATCTTCTTGTATTTACATACTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGTTAGCTTCACAGTCACAGCAATCTTCTTGTATTTACATACTGAA  450

seq1  AGCTGAAGCTACAGATGTAGGACACCATATCAGGCTTTAACATCAAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGCTACAGATGTAGGACACCATATCAGGCTTTAACATCAAATTT  500

seq1  TGTCTGACTTCTCTTGTATTTTGTTTTTGTTTATCTGAGACAGAGTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGACTTCTCTTGTATTTTGTTTTTGTTTATCTGAGACAGAGTCTTT  550

seq1  CTGTGTAGTCCTATACTCGTAGATGTCTTGTAACCTCATGTACTTTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGTCCTATACTCGTAGATGTCTTGTAACCTCATGTACTTTGATT  600

seq1  ATTTCATAAACTGGATGTACAAATTTGACATGTAAAATATTATACATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAAACTGGATGTACAAATTTGACATGTAAAATATTATACATGCA  650

seq1  TAAACTTATTACTTGGATTGCCCATGGTTGTACACATTCATGTGAAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTATTACTTGGATTGCCCATGGTTGTACACATTCATGTGAAATCT  700

seq1  TATACTCAATATGGATCTCTGAATAAATCTAACTGTCTTTTAATAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCAATATGGATCTCTGAATAAATCTAACTGTCTTTTAATAACATT  750

seq1  GTTTTTTTCCACCTGTGGTGCATTTGTCAAATTTGGAGATTTTTTCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTCCACCTGTGGTGCATTTGTCAAATTTGGAGATTTTTTCACTG  800

seq1  TCACAACCTGGGGTAAAATGAAATGGGAATAGAGGAAGTCCTATTGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCTGGGGTAAAATGAAATGGGAATAGAGGAAGTCCTATTGGCAT  850

seq1  CTAGAAAATGCAGTCTAGGAATGCTGCTATGTTTTAACAACTTAAAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAATGCAGTCTAGGAATGCTGCTATGTTTTAACAACTTAAAAACA  900

seq1  GCACTTCAGGGCTGGAGAGATGGCTTAGCGGTTAAGAGCACTGATTGCTC  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCACTTCAGGGCTGGAGAGATGGCTTAGCGGTTTAGAGCACTGATTGCTC  950

seq1  TTCCAGAGGTCCTGAGTTCAATTCCCAGTAACCACATGGTGGCTCACAAC  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  TTCCAGAGGTCCTGAGTTCAATT-CCAGTAACCACATGGTGGCTCAC-AC  998

seq1  CATCTGTCAT-GGGATCTGATACCCTCCTCTGGTGTGCCTGAAGAGAGCA  1049
      |||||||||| |||||||||||||||||||||||||||||| ||||||| 
seq2  CATCTGTCATGGGGATCTGATACCCTCCTCTGGTGTGCCTG-AGAGAGCC  1047

seq1  ACATTTTAACCACATACATAAAATAAAAACCACACTTCAATACAAGAACA  1099
      ||||||||||||||||||||||||||||  |||||||| |||| |||   
seq2  ACATTTTAACCACATACATAAAATAAAA--CACACTTC-ATAC-AGA--C  1091

seq1  TACAAAGTGTTATCTAGCTAAAATTATCATTATTTCTTTTCTGTCATTTA  1149
      |||  ||||||||||||||  ||||||||||| |||||||||||||||||
seq2  TAC--AGTGTTATCTAGCT-TAATTATCATTA-TTCTTTTCTGTCATTTA  1137

seq1  TCACACACACACAAATTGCTGTGGTGTCATGATTTTTGTTTTC--ATTAA  1197
      || |||||||||  | ||||||||   | ||| ||||||||||  |||| 
seq2  TCCCACACACACCCAATGCTGTGGGTGCTTGA-TTTTGTTTTCGTATTAC  1186

seq1  C--CAATATAATAT  1209
      |  |||||||||||
seq2  CGACAATATAATAT  1200


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