BAC Information

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BAC

Clone NameB6Ng01-240G19
ChromosomeX (Build37)
Map Location 161,774,206 - 161,893,129
singlet/doubletdoublet
Overlap genenone
Upstream genePir, Figf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045, Glra2
Downstream geneLOC100040753, Gemin8, Gpm6b, Ofd1, Trappc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240G19.bB6Ng01-240G19.g
ACCGA050600GA050601
length1,097773
definitionB6Ng01-240G19.b B6Ng01-240G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,892,017 - 161,893,129)(161,774,206 - 161,774,909)
sequence
gaattcttttagagattaaaaaaaaaaaaaaaaacaccagctgcaacaac
aaaacaaacagacaaacatcaacccccccccaaaaaaaaacaaatcaaaa
tgaaaaaaaaccaaccaaccaaccaaacaaacaaacaaaaaaccctactg
cacaaattcctttcctttccttcccttccttttccttccattcctttccc
ttcccttccttccctttccccatccctccctttctctgaggtgtgtgcat
ctatggaagctggaggctgatatcaggtgtttagtctccatcttattttc
tgagacagggctccttaccaatccgcaaggtttctcaccaatcccagagt
tcgctgattcgcctaggttgcatggcttgtaagcaccaggaatctgcctt
cctcatgtttggattccagatgcacagcactataccacggttcttatgct
ggtactgtggatccatactcacatactcatgattgtttgtcaaatattct
gtcaacagacctgccgtccagcctcaagcctcccatatcatgatattcag
ttattgaacacaagtcagtacagaatcaagaagtgagtaaggatattctt
ccctctgacagacatggaaagatgaatgaatagtttttaacagcaactta
atataacatcattgggaagtcttgtagatttttgagactaataattttga
tagttgctgattcaatcaaatagcaggaattaatgggtatctttataccg
ttttgagaattcctttctttactatgtgtctgtccagtccacatttcctc
agtgacacacctatgcccttactcatgagctctacttatgactgggttaa
aatttcattcttttaagattcaactttcttcttctagaagcttcacaaat
tctaatgttaggtatttctaaaatggttagccctggttttcaaagtattc
acagtatactttatcccattaagcatctatacattgggttgaaagtcaaa
atggttatttgcatacatagaatattgcactgtctctacatcatgctatc
tcccctcctttgtgctgtgcctctagagagcaacataacggactcaa
gaattcattctttttcatgctttgctgcttcattcaatgcgcattccaca
atttatttatctgttccactgctgttgggatttagagttgcttctagttg
gattttttttttttttttttttggctacaataaataatgctacatgatgt
tcttgagcagttcttctgcaatacatatgcaatgtttttctagggtgcct
atttggaggaagaattgctaaatctcagggtatacatagcttcacttttg
ttacatcctaccatgttgaatcctaatatataataaaaacgtacagtctt
cccataatgcggaaaaactctaattactttttattcctaccaacacttgg
cattttcagacttcttaattcttgccaatctgaaaatcattaaatactat
cacatactacttttagtttgcatttgtgtaattactaatgtggttggatg
ccagtgtaatatatttccagattttattttgccttccaaatgcctattta
ttgattaaaaaaacttttaattcacttgtttcttttccctgatttatatg
tatgaattattttatagtgaccatttttcaattatcgtgtatatctttgc
ccaatttgtgtgtgtgtgtgagtgtgtgtgtgtgtgtttgtggcatgtat
tttttaaaattttaatttaatcatatattattatgtatcaaatattatta
gcaaatgcaatgaaatatttttctaagttcaactgttttaaattttgtaa
tagatctatcttactatacagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_161892017_161893129
seq2: B6Ng01-240G19.b_42_1138 (reverse)

seq1  TTGAGTCCGTTATGTTGCTTCTTTCTAAGAGGCACAGCACAAAGGGAGGG  50
      |||||||||||||||||   || ||| |||||||||||||||| ||||||
seq2  TTGAGTCCGTTATGTTG---CTCTCT-AGAGGCACAGCACAAA-GGAGGG  45

seq1  GAGATTAGCAATTGATGTAGAAGACAGGTTGCAATATTCTATGTATGCCA  100
      |||| |||||  |||||||| ||||||  |||||||||||||||||| ||
seq2  GAGA-TAGCA--TGATGTAG-AGACAG--TGCAATATTCTATGTATG-CA  88

seq1  AATAAACCAATTTTGACTTTCAACCCAATGTATAGATGCTTTAATGGGAT  150
      |||||  | |||||||||||||||||||||||||||||| ||||||||||
seq2  AATAA--CCATTTTGACTTTCAACCCAATGTATAGATGC-TTAATGGGAT  135

seq1  AAAGTATACTGTGAATACTTTTGAAAACCAGGGCTAACCATTTTAGAAAT  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAGTATACTGTGAATAC-TTTGAAAACCAGGGCTAACCATTTTAGAAAT  184

seq1  ACCTAACATTAGAATTTGTGAAGCTTCTAGAAGAAGAAAGTTGAATCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACATTAGAATTTGTGAAGCTTCTAGAAGAAGAAAGTTGAATCTTA  234

seq1  AAAGAATGAAATTTTAACCCAGTCATAAGTAGAGCTCATGAGTAAGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGAAATTTTAACCCAGTCATAAGTAGAGCTCATGAGTAAGGGCA  284

seq1  TAGGTGTGTCACTGAGGAAATGTGGACTGGACAGACACATAGTAAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGTCACTGAGGAAATGTGGACTGGACAGACACATAGTAAAGAAA  334

seq1  GGAATTCTCAAAACGGTATAAAGATACCCATTAATTCCTGCTATTTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTCAAAACGGTATAAAGATACCCATTAATTCCTGCTATTTGATT  384

seq1  GAATCAGCAACTATCAAAATTATTAGTCTCAAAAATCTACAAGACTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGCAACTATCAAAATTATTAGTCTCAAAAATCTACAAGACTTCCC  434

seq1  AATGATGTTATATTAAGTTGCTGTTAAAAACTATTCATTCATCTTTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTTATATTAAGTTGCTGTTAAAAACTATTCATTCATCTTTCCAT  484

seq1  GTCTGTCAGAGGGAAGAATATCCTTACTCACTTCTTGATTCTGTACTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCAGAGGGAAGAATATCCTTACTCACTTCTTGATTCTGTACTGAC  534

seq1  TTGTGTTCAATAACTGAATATCATGATATGGGAGGCTTGAGGCTGGACGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCAATAACTGAATATCATGATATGGGAGGCTTGAGGCTGGACGG  584

seq1  CAGGTCTGTTGACAGAATATTTGACAAACAATCATGAGTATGTGAGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGTTGACAGAATATTTGACAAACAATCATGAGTATGTGAGTATG  634

seq1  GATCCACAGTACCAGCATAAGAACCGTGGTATAGTGCTGTGCATCTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACAGTACCAGCATAAGAACCGTGGTATAGTGCTGTGCATCTGGAA  684

seq1  TCCAAACATGAGGAAGGCAGATTCCTGGTGCTTACAAGCCATGCAACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACATGAGGAAGGCAGATTCCTGGTGCTTACAAGCCATGCAACCTA  734

seq1  GGCGAATCAGCGAACTCTGGGATTGGTGAGAAACCTTGCGGATTGGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAATCAGCGAACTCTGGGATTGGTGAGAAACCTTGCGGATTGGTAAG  784

seq1  GAGCCCTGTCTCAGAAAATAAGATGGAGACTAAACACCTGATATCAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTGTCTCAGAAAATAAGATGGAGACTAAACACCTGATATCAGCCT  834

seq1  CCAGCTTCCATAGATGCACACACCTCAGAGAAAGGGAGGGATGGGGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCCATAGATGCACACACCTCAGAGAAAGGGAGGGATGGGGAAAG  884

seq1  GGAAGGAAGGGAAGGGAAAGGAATGGAAGGAAAAGGAAGGGAAGGAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGGAAGGGAAAGGAATGGAAGGAAAAGGAAGGGAAGGAAAGG  934

seq1  AAAGGAATTTGTGCAGTAGGGTTTTTTGTTTGTTTGTTTGGTTGGTTGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATTTGTGCAGTAGGGTTTTTTGTTTGTTTGTTTGGTTGGTTGGT  984

seq1  TGGTTTTTTTTCATTTTGATTTGTTTTTTTTTGGGGGGGGGTTGATGTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTTTTCATTTTGATTTGTTTTTTTTTGGGGGGGGGTTGATGTTT  1034

seq1  GTCTGTTTGTTTTGTTGTTGCAGCTGGTGTTTTTTTTTTTTTTTTTAATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTGTTTTGTTGTTGCAGCTGGTGTTTTTTTTTTTTTTTTTAATC  1084

seq1  TCTAAAAGAATTC  1113
      |||||||||||||
seq2  TCTAAAAGAATTC  1097

seq1: chrX_161774206_161774909
seq2: B6Ng01-240G19.g_129_835

seq1  CACTGCTGTTGGGATTTAGAGTTGCTTCTAGTTGGATTTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGTTGGGATTTAGAGTTGCTTCTAGTTGGATTTTTTTTTTTTTT  50

seq1  TTTTTTGGCTACAATAAATAATGCTACATGATGTTCTTGAGCAGTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGCTACAATAAATAATGCTACATGATGTTCTTGAGCAGTTCTTC  100

seq1  TGCAATACATATGCAATGTTTTTCTAGGGTGCCTATTTGGAGGAAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATACATATGCAATGTTTTTCTAGGGTGCCTATTTGGAGGAAGAATT  150

seq1  GCTAAATCTCAGGGTATACATAGCTTCACTTTTGTTACATCCTACCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATCTCAGGGTATACATAGCTTCACTTTTGTTACATCCTACCATGT  200

seq1  TGAATCCTAATATATAATAAAAACGTACAGTCTTCCCATAATGCGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTAATATATAATAAAAACGTACAGTCTTCCCATAATGCGGAAAA  250

seq1  ACTCTAATTACTTTTTATTCCTACCAACACTTGGCATTTTCAGACTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAATTACTTTTTATTCCTACCAACACTTGGCATTTTCAGACTTCTT  300

seq1  AATTCTTGCCAATCTGAAAATCATTAAATACTATCACATACTACTTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGCCAATCTGAAAATCATTAAATACTATCACATACTACTTTTAG  350

seq1  TTTGCATTTGTGTAATTACTAATGTGGTTGGATGCCAGTGTAATATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTGTGTAATTACTAATGTGGTTGGATGCCAGTGTAATATATTT  400

seq1  CCAGATTTTATTTTGCCTTCCAAATGCCTATTTATTGATTAAAAAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTTATTTTGCCTTCCAAATGCCTATTTATTGATTAAAAAAACTT  450

seq1  TTAATTCACTTGTTTCTTTTCCCTGATTTATATGTATGAATTATTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCACTTGTTTCTTTTCCCTGATTTATATGTATGAATTATTTTATA  500

seq1  GTGACCATTTTTCAATTATCGTGTATATCTTTGCCCAATTTGTGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCATTTTTCAATTATCGTGTATATCTTTGCCCAATTTGTGTGTGTG  550

seq1  TGTGAGTGTGTGTGTGTGTGTTTGTGGCATGTATTTTTTAAAATTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGTGTGTGTGTGTGTTTGTGGCATGTATTTTTTAAAATTTTAAT  600

seq1  TTAATCATATATTATTATGTATCAAATATTATTAGCAAATGCAATG-AAT  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAATCATATATTATTATGTATCAAATATTATTAGCAAATGCAATGAAAT  650

seq1  A-TTTTCTAAGTTAAACTGTTTTAAATTTTGTAATAGATCTATC-TACTA  697
      | ||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  ATTTTTCTAAGTTCAACTGTTTTAAATTTTGTAATAGATCTATCTTACTA  700

seq1  TACAGCC  704
      |||||||
seq2  TACAGCC  707