BAC Information

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BAC

Clone NameB6Ng01-241N04
ChromosomeX (Build37)
Map Location 23,380,083 - 23,560,767
singlet/doubletdoublet
Overlap geneWdr44, EG236749, EG214450, EG245376
Upstream geneKlhl13, EG635719
Downstream geneLOC546271, LOC100043957, LOC100043206, LOC669000, LOC629204, EG546272, LOC100043216, EG546282, LOC100040417
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241N04.bB6Ng01-241N04.g
ACCGA051641GA051642
length1,1111,162
definitionB6Ng01-241N04.b B6Ng01-241N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,380,083 - 23,381,177)(23,559,624 - 23,560,767)
sequence
gaattcaaagaggcctcgctggggcagaggtagatagatgcagagagtca
ctgaggctgttagataagacattaaggaactcagcagaagagcttctgga
gcctcaggagagcaaagccatagccaagctgtgaaagtggaggatggaga
aacagctaataggcaactcaagcgggacacttcaagcagaggggactaag
ctgtgctgaaccttatgggatatagagagttctctgtttttgacataaac
cacatggtcaggttgcagttccctgagtttgtgacccttgtcattaaaat
gataggacctgtctttatataggggccagataagcgtatcccaccttttg
atgtattcacaaagttctggggcctgtttttattttttttcctgatatag
ttttaataagccgttgtcgtcatatgttgataagtttataggtgctattc
ttgtaggtttaataataaagagccaaatgctgattggtaatacacagcca
cccaggacaagacggggacaatcttagagcaaggcacagcctgatcttca
cagatatattggaagtttagcaattataactggttgtgttttgtttctaa
ctgttttattttcctataccaaggaagaattgatcctgacctaaaatttg
aaaagttatggaagagtagaagctatgacacagtttttttttaggaaata
tccctgagtttaaaattagacttatatattttaaaagatctttttaatag
tctcatttttgtctttatgcttagtataaaatttctcagttatcttgaaa
taaattttcccagcacataatgcagttgttgcgtcagcccatctctgctc
caaacccaagtttgatgctatccttggatgtgcaatctgaaaaattagaa
gggattgataaatatgaagatgctgaatttttggatagcaacatctactg
ggtaggtgccaagttattagtttgtttattctgtttgggctgtatttgtc
cctacctaccttatggtaagacttttcatgcatgtaaccaacaatatttc
ttgtgtacgtactactattggggttcggtagatacccatttgccgactgt
atctaatgaca
gaattctgtgaataggtgaagagtcccaaattattttggggatagggaaa
gctctccaatgtctttgagggaaaaactagaaagatctggagtgcctgag
gcagatagcaattgggctacatacactgaggtagacagaaaagatttgaa
aatccccctaggcagatagtaatattttaatttgctcttggaaaattgag
aaggtctctgagatcccaggcgataactcctgagtcctatattatcctgg
gcatgtggttctctctgggtatattctcccttcttgggcagatatagatg
ttcctagaacactttgtgcagacagagcaggtctcagaagcaatgagaca
ggttgaaacactcctaaattaatttagacatatggagaagatcttatcct
cactgttgtagatggtaaagtatgtaaatctgcagttgaagcattagaat
tccctatcttgtcatgtacataggtgaaatcatccagattttccagtaaa
ggcaggcaatgtactccagagtcttagaaagaaaacaaaggcccagtcct
cacttgatcagacaaaggaattgcaaatggcctcaggttatatcatacag
atcctagagtccattatccagataaagaaaataccatgtgaattttggaa
gaagacatagatcctgaaaagactgaagagcatggatctttttgttggac
cctttggacagacttcagagtttaaaagtgttcctttgtaggaagcagaa
ggtcctgatgtatcttttgaaaggaggaatagaaagggtttaggaagaaa
gtaaaagagcaacttggcaattactgaaagttctaacgtggaatgagtgg
acaccacatatcctgttgaaccctgtttatgttttttgggcacctgttgc
agatgctgaatatcctggaagccccatggggaggtggcaaaggggtctaa
ccgaggcctgatgcagttattaaactcctcagagacccatggggcataat
tttcaaattttctgccagttttgagcaagaatatgccatgtccctgaaac
actgggaataagatggtgatattgctactgttgcactgtgtagaagttgc
aactgtgtcccaggcaagttacccatatcctccctttggagacgaattaa
ggttttgaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_23380083_23381177
seq2: B6Ng01-241N04.b_44_1154

seq1  GAATTCAAAGAGGCCTCGCTGGGGCAGAGGTAGATAGATGCAGAGAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGGCCTCGCTGGGGCAGAGGTAGATAGATGCAGAGAGTCA  50

seq1  CTGAGGCTGTTAGATAAGACATTAAGGAACTCAGCAGAAGAGCTTCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTGTTAGATAAGACATTAAGGAACTCAGCAGAAGAGCTTCTGGA  100

seq1  GCCTCAGGAGAGCAAAGCCATAGCCAAGCTGTGAAAGTGGAGGATGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGAGAGCAAAGCCATAGCCAAGCTGTGAAAGTGGAGGATGGAGA  150

seq1  AACAGCTAATAGGCAACTCAAGCGGGACACTTCAAGCAGAGGGGACTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTAATAGGCAACTCAAGCGGGACACTTCAAGCAGAGGGGACTAAG  200

seq1  CTGTGCTGAACCTTATGGGATATAGAGAGTTCTCTGTTTTTGACATAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGAACCTTATGGGATATAGAGAGTTCTCTGTTTTTGACATAAAC  250

seq1  CACATGGTCAGGTTGCAGTTCCCTGAGTTTGTGACCCTTGTCATTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTCAGGTTGCAGTTCCCTGAGTTTGTGACCCTTGTCATTAAAAT  300

seq1  GATAGGACCTGTCTTTATATAGGGGCCAGATAAGCGTATCCCACCTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGACCTGTCTTTATATAGGGGCCAGATAAGCGTATCCCACCTTTTG  350

seq1  ATGTATTCACAAAGTTCTGGGGCCTGTTTTTATTTTTTTTCCTGATATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCACAAAGTTCTGGGGCCTGTTTTTATTTTTTTTCCTGATATAG  400

seq1  TTTTAATAAGCCGTTGTCGTCATATGTTGATAAGTTTATAGGTGCTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAAGCCGTTGTCGTCATATGTTGATAAGTTTATAGGTGCTATTC  450

seq1  TTGTAGGTTTAATAATAAAGAGCCAAATGCTGATTGGTAATACACAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGTTTAATAATAAAGAGCCAAATGCTGATTGGTAATACACAGCCA  500

seq1  CCCAGGACAAGACGGGGACAATCTTAGAGCAAGGCACAGCCTGATCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACAAGACGGGGACAATCTTAGAGCAAGGCACAGCCTGATCTTCA  550

seq1  CAGATATATTGGAAGTTTAGCAATTATAACTGGTTGTGTTTTGTTTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATTGGAAGTTTAGCAATTATAACTGGTTGTGTTTTGTTTCTAA  600

seq1  CTGTTTTATTTTCCTATACCAAGGAAGAATTGATCCTGACCTAAAATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTATTTTCCTATACCAAGGAAGAATTGATCCTGACCTAAAATTTG  650

seq1  AAAAGTTATGGAAGAGTAGAAGCTATGAGACAG-TTTTTTTTAGGAAATA  699
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  AAAAGTTATGGAAGAGTAGAAGCTATGACACAGTTTTTTTTTAGGAAATA  700

seq1  TTTCTGAGTTTAAAATTAGACTTATATATTTTAAAAGATCTTTTTAATAG  749
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGTTTAAAATTAGACTTATATATTTTAAAAGATCTTTTTAATAG  750

seq1  TCTCATTTTTGTCTTTATGCTTAGTATAAAATTTCTCAGTTATCTTGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTTGTCTTTATGCTTAGTATAAAATTTCTCAGTTATCTTGAAA  800

seq1  TAAATTTTCCCAGCACATAATGCAGTTGTTACGTCAG-CCATCTTTGCTC  848
      |||||||||||||||||||||||||||||| |||||| |||||| |||||
seq2  TAAATTTTCCCAGCACATAATGCAGTTGTTGCGTCAGCCCATCTCTGCTC  850

seq1  CAAACCCAAGTTTGATGCTATCCTTGGATGTGCAATCTGAAAAATTAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCAAGTTTGATGCTATCCTTGGATGTGCAATCTGAAAAATTAGAA  900

seq1  GGGATTGATAAATATGAAGATGCTGAAGTTTTGGATAGC-ACATCTACT-  946
      ||||||||||||||||||||||||||| ||||||||||| ||||||||| 
seq2  GGGATTGATAAATATGAAGATGCTGAATTTTTGGATAGCAACATCTACTG  950

seq1  GGTAGGTGCC-AGTT-TTA-TTTGTTTATTTTGTTTGGTCTGT-TTTTTC  992
      |||||||||| |||| ||| |||||||||| ||||||| |||| ||| ||
seq2  GGTAGGTGCCAAGTTATTAGTTTGTTTATTCTGTTTGGGCTGTATTTGTC  1000

seq1  CCTACCTACC-TATGGTAAGA-TTTTCATGCATGTAA--AAAAATATTTC  1038
      |||||||||| |||||||||| |||||||||||||||  || ||||||||
seq2  CCTACCTACCTTATGGTAAGACTTTTCATGCATGTAACCAACAATATTTC  1050

seq1  TTGTGTACTACCTACTATTGGG--TTGTTAGATACCCATTTCTGAAC--T  1084
      ||||||||   |||||||||||  | | |||||||||||||    ||  |
seq2  TTGTGTACGTACTACTATTGGGGTTCGGTAGATACCCATTTGCCGACTGT  1100

seq1  TTCTAATGACA  1095
       ||||||||||
seq2  ATCTAATGACA  1111

seq1: chrX_23559624_23560767
seq2: B6Ng01-241N04.g_63_1224 (reverse)

seq1  GTATTCAAACACCTCATTCTGCTC--AAGG--AGATATGGGT-ACCTGCC  45
      |||||||||  | | ||||  |||  ||||   ||||||||| || ||||
seq2  GTATTCAAAACCTTAATTCGTCTCCAAAGGGAGGATATGGGTAACTTGCC  50

seq1  T-GAACACAGT--CCACTTCTACACAGTGC-ACAGTAGCATATTCACCAT  91
      | | |||||||  | ||||||||||||||| |||||||||   |||||||
seq2  TGGGACACAGTTGCAACTTCTACACAGTGCAACAGTAGCAATATCACCAT  100

seq1  CT--ATCCCAGTGTTTCAAGGACAT-GCATA-TCTTGCTCAAAAACTGGC  137
      ||   ||||||||||||| |||||| ||||| |||||||| |||||||||
seq2  CTTATTCCCAGTGTTTCAGGGACATGGCATATTCTTGCTC-AAAACTGGC  149

seq1  AGGAAAATTTGAAA--TATG-CCCATGGGTCTCTGAGAAGTTAAATAACT  184
      | ||||||||||||  |||| |||||||||||||||| |||| |||||||
seq2  A-GAAAATTTGAAAATTATGCCCCATGGGTCTCTGAGGAGTTTAATAACT  198

seq1  GCATCAGG-CTCGG-TAGACCCC-TTGCCACCTCCCCATGGGGC-TCCAG  230
      |||||||| ||||| |||||||| |||||||||||||||||||| |||||
seq2  GCATCAGGCCTCGGTTAGACCCCTTTGCCACCTCCCCATGGGGCTTCCAG  248

seq1  GATATTCAGCATCTGCAACAGGTGCCCAAAAAACATAAACA-GGTTCAAC  279
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GATATTCAGCATCTGCAACAGGTGCCCAAAAAACATAAACAGGGTTCAAC  298

seq1  AGGATATGTGGTGTCCACTCATTCCACGTTAGAACTTTCAGTAATTGCCA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGTGGTGTCCACTCATTCCACGTTAGAACTTTCAGTAATTGCCA  348

seq1  AGTTGCTCTTTTACTTTCTTCCTAAACCCTTTCTATTCCTCCCTTTCAAA  379
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTTGCTCTTTTACTTTCTTCCTAAACCCTTTCTATTCCT-CCTTTCAAA  397

seq1  AGATACATCAGGACCTTCTGCTTCCTACAAAGGAACACTTTTAAACTCTG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATCAGGACCTTCTGCTTCCTACAAAGGAACACTTTTAAACTCTG  447

seq1  AAGTCTGTCCAAAGGGTCCAACAAAAAGATCCATGCTCTTCAGTCTTTTC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTCCAAAGGGTCCAACAAAAAGATCCATGCTCTTCAGTCTTTTC  497

seq1  AGGATCTATGTCTTCTTCCAAAATTCACATGGTATTTTCTTTATCTGGAT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTATGTCTTCTTCCAAAATTCACATGGTATTTTCTTTATCTGGAT  547

seq1  AATGGACTCTAGGATCTGTATGATATAACCTGAGGCCATTTGCAATTCCT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTCTAGGATCTGTATGATATAACCTGAGGCCATTTGCAATTCCT  597

seq1  TTGTCTGATCAAGTGAGGACTGGGCCTTTGTTTTCTTTCTAAGACTCTGG  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGATCAAGTGAGGACTGGGCCTTTGTTTTCTTTCTAAGACTCTGG  647

seq1  AGTACATTGCCTGCCTTTACTGGAAAATCTGGATGATTTCACCTATGTAC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTGCCTGCCTTTACTGGAAAATCTGGATGATTTCACCTATGTAC  697

seq1  ATGACAAGATAGGGAATTCTAATGCTTCAACTGCAGATTTACATACTTTA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGATAGGGAATTCTAATGCTTCAACTGCAGATTTACATACTTTA  747

seq1  CCATCTACAACAGTGAGGCTAAGATCTTCTCCATATGTCTAAATTAATTT  779
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCATCTACAACAGTGAGGATAAGATCTTCTCCATATGTCTAAATTAATTT  797

seq1  AGGAGTGTTTCAACCTGTCTCATTGCTTCTGAGACCTGCTCTGTCTGCAC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTTTCAACCTGTCTCATTGCTTCTGAGACCTGCTCTGTCTGCAC  847

seq1  AAAGTGTTCTAGGAACATCTATATCTGCCCAAGATGTGAGAATATACCCA  879
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  AAAGTGTTCTAGGAACATCTATATCTGCCCAAGAAGGGAGAATATACCCA  897

seq1  GAGAGAACCACATGCCCAGGATAATATAGGACTCAGGACTTATTGCCTGG  929
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  GAGAGAACCACATGCCCAGGATAATATAGGACTCAGGAGTTATCGCCTGG  947

seq1  GATCTCAGAGACCTTCTCAATTTTCCAAGAGCAAATTAAAATATTACTAT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGAGACCTTCTCAATTTTCCAAGAGCAAATTAAAATATTACTAT  997

seq1  CTGCCTAGGGGGATTTTCAAATCTTTTCTGTCTACCTCAGTGTCTGTAGC  1029
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGCCTAGGGGGATTTTCAAATCTTTTCTGTCTACCTCAGTGTATGTAGC  1047

seq1  ACAATTGCTATCTGCCTCAGGCACTCCAGATCTTTTTAGTTTTTCCCTCA  1079
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCAATTGCTATCTGCCTCAGGCACTCCAGATCTTTCTAGTTTTTCCCTCA  1097

seq1  AAGACACTGGAGAGCTTTCCCTATCCCCAAAATAATTTGGGACTCTTCAC  1129
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTGGAGAGCTTTCCCTATCCCCAAAATAATTTGGGACTCTTCAC  1147

seq1  CTATTCACAGAATTC  1144
      |||||||||||||||
seq2  CTATTCACAGAATTC  1162