BAC Information

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BAC

Clone NameB6Ng01-243C23
ChromosomeX (Build37)
Map Location 55,939,036 - 56,063,342
singlet/doubletdoublet
Overlap geneLOC631621
Upstream geneEG666441, LOC666447, Zic3, LOC631581
Downstream gene4930550L24Rik, Fgf13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243C23.bB6Ng01-243C23.g
ACCGA052640GA052641
length1,112552
definitionB6Ng01-243C23.b B6Ng01-243C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,062,219 - 56,063,342)(55,939,036 - 55,939,593)
sequence
gaattcaagcattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaccctattgaccagaggaagctaaaatgaatgttctggaaagc
tgaaatggctggaaagtgaataaaacagcactgaaaaggaatgagctgaa
caaaaaagccttggagtctgacaaaggctaatggaggatttcttgaatag
tctctgcaggtactggggcaaaggggaagcgcagggagagtgtattaaac
agcagctgttttgaggatgatagggttcaaaaatactagtggtcagtcgg
tgctaaaaagtattggcaatgtcatctagccaaagtatattccttagcat
ctaaatgaaacatcaaaaaggctggcccaaaaaaataaaaactatggtga
agctgactcttaatctactcccaattaaaaaaaaaaacaaactttggtat
atggttacatttttcattggatatatattcacattgtatatggtactgtg
ttatttaatgacattgtcatgtgagtgtatgctgcaagttgagcatatga
ctcccactccacctccccttctttttctctttctttccttccctgctaat
cctcttctttcaactaagcagtgccacttctactttcatgtcttatatac
atacataatttcatatgtctctatgaaatctagaaaacacaaataaaaga
aaatgagtgatagagttatagctttattcataagcttaaatgcataattt
ggttgaggtttaatttatttaatatggttatcttcagttgtatccttttt
tctttttttaattaggtattttcttcatttacatttccaatgctatccca
aaagtcccccataccctctcccccccactcccctacccatccactcccac
ttcttgccctggcgttcctctgtactgaggcatacaaagtttggaagact
attgggccttctctgacactgatggcctactaggccatcttctgatacat
atgcagctagagatatgagcctccaggaagtactatagttatattgtgtt
cacttatagggtgcagccctttcagctctgagtactccctagctcctcat
aggagccctgtg
caaggggcagacaacaattgtaagaggggagctagaggtagaccatgctg
ataaaggggaaaatggctttggcttgcttcagacacactctgctctaata
aaaaggagctttgggatggaaagggggcttgttatggcagagtactcata
acatgcaggcaagaaacgagccagcattcattaagctctctgtgtggctg
gtgtgcagtctggacctccaagtgtaaagtataaatcaaaatgctatgga
gcacttggaaaatgtgaggatcttttagggcagacacttccagccatacc
gtctgttttgcctggatctatttatttatccaccattcatccagaattcc
tgagagtccttagtgaacagagcagcttttctactctcagtgatgcaagt
gaatgaagccataggtgggaaaattgcgccccatatggtgagtgttatgg
ctgagcagagtgctggagagtagagagcaggtgcaccaagtcagaccagc
tctgtggaaaatacgggccttcagggtgagggaatagaggggtgggtggg
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_56062219_56063342
seq2: B6Ng01-243C23.b_39_1150 (reverse)

seq1  CACAGGGCTCCTAATGGAGGAGCTAGAGAAAGTACTCAAGGAGCTGAAGG  50
      |||||||||||||   |||||||||| |  ||||||||  |||||||| |
seq2  CACAGGGCTCCTA--TGAGGAGCTAGGG--AGTACTCA--GAGCTGAAAG  44

seq1  GGCCTGCAACCCTATAGGTGGAACAACAATATAAACTAACCAGTACCTCC  100
      || |||| |||||||| || |||| ||||||| |||||   ||||| |||
seq2  GG-CTGC-ACCCTATAAGT-GAAC-ACAATAT-AACTA--TAGTACTTCC  87

seq1  CGGA-GCTCATATCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTAGG  149
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTCATATCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTAGG  137

seq1  CCATCAGTGTCAAGAG-AGGCCCAATAGTCTTCCAAACTTTGTATGCCTC  198
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  CCATCAGTGTC-AGAGAAGGCCCAATAGTCTTCCAAACTTTGTATGCCTC  186

seq1  AGTACAGAGGAACGCCAGGGCCAAGAAGTGGGAGTGGATGGGTAGGGGAG  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTACAGAGGAACGCCAGGG-CAAGAAGTGGGAGTGGATGGGTAGGGGAG  235

seq1  TGGGGGGGAGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGAGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAAA  285

seq1  TGAAGAAAATACCTAATTAAAAAAAGAAAAAAGGATACAACTGAAGATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAATACCTAATTAAAAAAAGAAAAAAGGATACAACTGAAGATAA  335

seq1  CCATATTAAATAAATTAAACCTCAACCAAATTATGCATTTAAGCTTATGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTAAATAAATTAAACCTCAACCAAATTATGCATTTAAGCTTATGA  385

seq1  ATAAAGCTATAACTCTATCACTCATTTTCTTTTATTTGTGTTTTCTAGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTATAACTCTATCACTCATTTTCTTTTATTTGTGTTTTCTAGAT  435

seq1  TTCATAGAGACATATGAAATTATGTATGTATATAAGACATGAAAGTAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAGACATATGAAATTATGTATGTATATAAGACATGAAAGTAGAA  485

seq1  GTGGCACTGCTTAGTTGAAAGAAGAGGATTAGCAGGGAAGGAAAGAAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACTGCTTAGTTGAAAGAAGAGGATTAGCAGGGAAGGAAAGAAAGA  535

seq1  GAAAAAGAAGGGGAGGTGGAGTGGGAGTCATATGCTCAACTTGCAGCATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAGGGGAGGTGGAGTGGGAGTCATATGCTCAACTTGCAGCATA  585

seq1  CACTCACATGACAATGTCATTAAATAACACAGTACCATATACAATGTGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACATGACAATGTCATTAAATAACACAGTACCATATACAATGTGAA  635

seq1  TATATATCCAATGAAAAATGTAACCATATACCAAAGTTTGTTTTTCTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  TATATATCCAATGAAAAATGTAACCATATACCAAAGTTTGTTTTTTTTTT  685

seq1  TAATTGGGAGTAGATTAAGAGTCAGCTTCACCATAGTTCTTATTCTTTTG  748
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  TAATTGGGAGTAGATTAAGAGTCAGCTTCACCATAGTTTTTATTTTTTTG  735

seq1  GGCCAGCCTTTCTGATGTCTCATCTAGATGCTAAGGAATATACTCTGGCT  798
      ||||||||||| |||||| |||| |||||||||||||||||||| |||||
seq2  GGCCAGCCTTTTTGATGTTTCATTTAGATGCTAAGGAATATACTTTGGCT  785

seq1  AGATGACATTGCCAATACTTTTTAGCACCGACTGACCACTAGTATCTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||| | ||
seq2  AGATGACATTGCCAATACTTTTTAGCACCGACTGACCACTAGTATTTTTG  835

seq1  AACCCTATCATCCTCAAAACAGCTGCTGTCTAATACACTCTCCCTGCGCT  898
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACCCTATCATCCTCAAAACAGCTGCTGTTTAATACACTCTCCCTGCGCT  885

seq1  TCCCCTCTGCCCCAGTACCTGCAGAGACTATTCAAGAAATCCTCCATTAG  948
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTTGCCCCAGTACCTGCAGAGACTATTCAAGAAATCCTCCATTAG  935

seq1  CCTTTGTCAGACTCCAAGGCTTCTCTGTTCAGCTCATTCCTTTTCAGTGC  998
      |||||||||||||||||||||| | |||||||||||||||||||||||||
seq2  CCTTTGTCAGACTCCAAGGCTTTTTTGTTCAGCTCATTCCTTTTCAGTGC  985

seq1  TGTTCTATTCACTTTCCAGCCATTTCAGCTTTCCAGAACATTCATTTTAG  1048
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTCACTTTCCAGCCATTTCAGCTTTCCAGAACATTCATTTTAG  1035

seq1  CTTCCTCTGGTCAATAGGG-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  1097
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTCCTCTGGTCAATAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  1085

seq1  TTTTTTTTTTTTTTAATGCTTGAATTC  1124
      |||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTAATGCTTGAATTC  1112

seq1: chrX_55939036_55939593
seq2: B6Ng01-243C23.g_67_624

seq1  GAATTCCAAGGGGCAGACAACAATTGTAAGAGGGGAGCTAGAGGTAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGGGCAGACAACAATTGTAAGAGGGGAGCTAGAGGTAGACC  50

seq1  ATGCTGATAAAGGGGAAAATGGCTTTGGCTTGCTTCAGACACACTCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATAAAGGGGAAAATGGCTTTGGCTTGCTTCAGACACACTCTGCT  100

seq1  CTAATAAAAAGGAGCTTTGGGATGGAAAGGGGGCTTGTTATGGCAGAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAAAGGAGCTTTGGGATGGAAAGGGGGCTTGTTATGGCAGAGTA  150

seq1  CTCATAACATGCAGGCAAGAAACGAGCCAGCATTCATTAAGCTCTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAACATGCAGGCAAGAAACGAGCCAGCATTCATTAAGCTCTCTGTG  200

seq1  TGGCTGGTGTGCAGTCTGGACCTCCAAGTGTAAAGTATAAATCAAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTGTGCAGTCTGGACCTCCAAGTGTAAAGTATAAATCAAAATGC  250

seq1  TATGGAGCACTTGGAAAATGTGAGGATCTTTTAGGGCAGACACTTCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGCACTTGGAAAATGTGAGGATCTTTTAGGGCAGACACTTCCAGC  300

seq1  CATACCGTCTGTTTTGCCTGGATCTATTTATTTATCCACCATTCATCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCGTCTGTTTTGCCTGGATCTATTTATTTATCCACCATTCATCCAG  350

seq1  AATTCCTGAGAGTCCTTAGTGAACAGAGCAGCTTTTCTACTCTCAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGAGAGTCCTTAGTGAACAGAGCAGCTTTTCTACTCTCAGTGAT  400

seq1  GCAAGTGAATGAAGCCATAGGTGGGAAAATTGCGCCCCATATGGTGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGAATGAAGCCATAGGTGGGAAAATTGCGCCCCATATGGTGAGTG  450

seq1  TTATGGCTGAGCAGAGTGCTGGAGAGTAGAGAGCAGGTGCACCAAGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCTGAGCAGAGTGCTGGAGAGTAGAGAGCAGGTGCACCAAGTCAG  500

seq1  ACCAGCTCTGTGGAAAATACGGGCCTTCAGGGTGAGGGAATAGAGGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTCTGTGGAAAATACGGGCCTTCAGGGTGAGGGAATAGAGGGGTG  550

seq1  GGTGGGGG  558
      ||||||||
seq2  GGTGGGGG  558