BAC Information

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BAC

Clone NameB6Ng01-244F11
ChromosomeX (Build37)
Map Location 40,615,798 - 40,772,825
singlet/doubletdoublet
Overlap geneOdz1
Upstream geneStag2, LOC100039899, Sh2d1a
Downstream geneGm362, LOC100039977, LOC100039987, LOC637141, Wdr40c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244F11.bB6Ng01-244F11.g
ACCGA053500GA053501
length712189
definitionB6Ng01-244F11.b B6Ng01-244F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,615,798 - 40,616,509)(40,772,637 - 40,772,825)
sequence
gaattcagtgtgaacacagttcttttgaaaaaaaatagttattaaacttt
atttttattatgaaattaatattttattctataaaacagaagaaagtgag
atttcataacttaaatacagattgttaaataaaaatgtcaattctcattt
tttttttgctttagctgatattttattcattctttgcagatttcatcttt
tgactttaacttgataatatgtcccttcctaattctcttttgagccctcc
caccacatctcattatttcatgttcttttcttttgactaaattcactgaa
tccagttaattttaccatatcttcatgggtgtgtggttgaccactgaggc
atagaagcaaccacttcaaagaaaaggaccgtcctttctttagcaaccat
gaactgccaacagggctccattaaaaggtggagcattagaaacctcatca
gtgctgggataaattggcttgatcttgcaaagatattatataagtgacag
atgcttttagtttatccatgcaacagccttggcatttcttgaatacagca
ttgcacagaattcatcttcctcttctgacttacattctcattctttatat
actctgcggtggtttggatgagaatggacaccatgcactcttatatgctt
ggtccttagttggtatagatgttttaggaaggattaggagttatggtttt
attggagaaagt

tctaaaagcaataaccagaatattgtgaaaactcaaacatgataaagctt
tataaaggatagactgcttaaattaattctttttttagatttgtaaagtc
tctctcgctcttctctctctctctcctgttctcaatctcgctctcgctct
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_40615798_40616509
seq2: B6Ng01-244F11.b_44_755

seq1  GAATTCAGTGTGAACACAGTTCTTTTGAAAAAAAATAGTTATTAAACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGAACACAGTTCTTTTGAAAAAAAATAGTTATTAAACTTT  50

seq1  ATTTTTATTATGAAATTAATATTTTATTCTATAAAACAGAAGAAAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTATGAAATTAATATTTTATTCTATAAAACAGAAGAAAGTGAG  100

seq1  ATTTCATAACTTAAATACAGATTGTTAAATAAAAATGTCAATTCTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAACTTAAATACAGATTGTTAAATAAAAATGTCAATTCTCATTT  150

seq1  TTTTTTTGCTTTAGCTGATATTTTATTCATTCTTTGCAGATTTCATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCTTTAGCTGATATTTTATTCATTCTTTGCAGATTTCATCTTT  200

seq1  TGACTTTAACTTGATAATATGTCCCTTCCTAATTCTCTTTTGAGCCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTAACTTGATAATATGTCCCTTCCTAATTCTCTTTTGAGCCCTCC  250

seq1  CACCACATCTCATTATTTCATGTTCTTTTCTTTTGACTAAATTCACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACATCTCATTATTTCATGTTCTTTTCTTTTGACTAAATTCACTGAA  300

seq1  TCCAGTTAATTTTACCATATCTTCATGGGTGTGTGGTTGACCACTGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTAATTTTACCATATCTTCATGGGTGTGTGGTTGACCACTGAGGC  350

seq1  ATAGAAGCAACCACTTCAAAGAAAAGGACCGTCCTTTCTTTAGCAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCAACCACTTCAAAGAAAAGGACCGTCCTTTCTTTAGCAACCAT  400

seq1  GAACTGCCAACAGGGCTCCATTAAAAGGTGGAGCATTAGAAACCTCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCCAACAGGGCTCCATTAAAAGGTGGAGCATTAGAAACCTCATCA  450

seq1  GTGCTGGGATAAATTGGCTTGATCTTGCAAAGATATTATATAAGTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATAAATTGGCTTGATCTTGCAAAGATATTATATAAGTGACAG  500

seq1  ATGCTTTTAGTTTATCCATGCAACAGCCTTGGCATTTCTTGAATACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTAGTTTATCCATGCAACAGCCTTGGCATTTCTTGAATACAGCA  550

seq1  TTGCACAGAATTCATCTTCCTCTTCTGACTTACATTCTCATTCTTTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGAATTCATCTTCCTCTTCTGACTTACATTCTCATTCTTTATAT  600

seq1  ACTCTGCGGTGGTTTGGATGAGAATGGACACCATGCACTCTTATATGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCGGTGGTTTGGATGAGAATGGACACCATGCACTCTTATATGCTT  650

seq1  GGTCCTTAGTTGGTATAGATGTTTTAGGAAGGATTAGGAGTTATGGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTAGTTGGTATAGATGTTTTAGGAAGGATTAGGAGTTATGGTTTT  700

seq1  ATTGGAGAAAGT  712
      ||||||||||||
seq2  ATTGGAGAAAGT  712


seq1: chrX_40772637_40772825
seq2: B6Ng01-244F11.g_71_259 (reverse)

seq1  CACATACACACACACACACACACACACACACACACACACAGAGCGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACACACACACACACACACACACACACACAGAGCGAGAGC  50

seq1  GAGATTGAGAACAGGAGAGAGAGAGAGAAGAGCGAGAGAGACTTTACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGAGAACAGGAGAGAGAGAGAGAAGAGCGAGAGAGACTTTACAAA  100

seq1  TCTAAAAAAAGAATTAATTTAAGCAGTCTATCCTTTATAAAGCTTTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAAAGAATTAATTTAAGCAGTCTATCCTTTATAAAGCTTTATCA  150

seq1  TGTTTGAGTTTTCACAATATTCTGGTTATTGCTTTTAGA  189
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGTTTTCACAATATTCTGGTTATTGCTTTTAGA  189


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