MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-244G23
Chromosome	X (Build37)	11 (Build37)
Map Location	94,562,141 - 94,562,404	38,390,331 - 38,391,404
singlet/doublet	singlet	singlet
Overlap gene	Eda2r
Upstream gene	B230358A15Rik, Heph, Gpr165, LOC675824, LOC668234, EG668236, LOC668238, Pgr15l
Downstream gene	LOC668244, Ar
Link	Open Mouse BAC browser

Click to get alignment info.

name	B230358A15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245525 MGI:3045337
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Heph (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15203 MGI:1332240
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gpr165 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76206 MGI:1923456
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC675824 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:675824
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC668234 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668234
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	EG668236 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668236 MGI:3648922
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 1 Protein pseudo : _no_value

name	LOC668238 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668238
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Pgr15l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245526 MGI:2676330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eda2r (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245527 MGI:2442860
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668244 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668244
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Ar (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11835 MGI:88064
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B230358A15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370938 GeneID:245525 MGI:3045337
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B230358A15 gene transcript_id : NM_172931.2

name	Heph (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754179 GeneID:15203 MGI:1332240
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hephaestin transcript_id : NM_010417.1

name	Heph (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349030 GeneID:15203 MGI:1332240
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hephaestin transcript_id : NM_181273.3

name	Gpr165 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388875 GeneID:76206 MGI:1923456
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 165 transcript_id : NM_029536.2

name	Pgr15l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802340 GeneID:245526 MGI:2676330
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 15-like transcript_id : NM_001033361.2

name	Eda2r (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353600 GeneID:245527 MGI:2442860
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ectodysplasin A2 isoform receptor transcript_id : NM_175540.4

name	Ar (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129906 GeneID:11835 MGI:88064
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : androgen receptor transcript_id : NM_013476.3

name	Heph (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754180 CCDS:CCDS30289.1 GeneID:15203 MGI:1332240
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transporter activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006825 - copper ion transport [Evidence IEA]; GO:0030218 - erythrocyte differentiation [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0006826 - iron ion transport [Evidence TAS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1; haphaestin; sex linked anemia product : hephaestin isoform 1 protein_id : NP_034547.1

name	Heph (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30911107 CCDS:CCDS30290.1 GeneID:15203 MGI:1332240
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transporter activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006825 - copper ion transport [Evidence IEA]; GO:0030218 - erythrocyte differentiation [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0006826 - iron ion transport [Evidence TAS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; haphaestin; sex linked anemia product : hephaestin isoform 2 protein_id : NP_851790.1

name	Gpr165 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626052 CCDS:CCDS30291.1 GeneID:76206 MGI:1923456
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 165 protein_id : NP_083812.1

name	Pgr15l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84781789 CCDS:CCDS30292.1 GeneID:245526 MGI:2676330
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004983 - neuropeptide Y receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : G protein-coupled receptor PGR15L product : G protein-coupled receptor 15-like protein_id : NP_001028533.1

name	Eda2r (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982201 CCDS:CCDS30293.1 GeneID:245527 MGI:2442860
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0004872 - receptor activity [Evidence ISS]; GO:0005031 - tumor necrosis factor receptor activity [Evidence ISS] GO_process : GO:0051092 - activation of NF-kappaB transcription factor [Evidence ISS]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0009790 - embryonic development [Evidence ISS]; GO:0008544 - epidermis development [Evidence ISS]; GO:0046330 - positive regulation of JNK cascade [Evidence ISS] codon_start : 1 exception : mismatches in translation product : X linked ectodysplasin receptor protein_id : NP_780749.2

name	Ar (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304901 CCDS:CCDS30294.1 GeneID:11835 MGI:88064
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] [Evidence IDA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IPI] [Evidence IDA] GO_function : GO:0004882 - androgen receptor activity [Evidence ISS] [Evidence IDA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence ISS] [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030521 - androgen receptor signaling pathway [Evidence IDA]; GO:0016049 - cell growth [Evidence ISS]; GO:0050875 - cellular physiological process [Evidence IDA]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0008584 - male gonad development [Evidence IMP]; GO:0019102 - male somatic sex determination [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : testicular feminization product : androgen receptor protein_id : NP_038504.1

name	LOC675824 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675824
definition	number : 5 pseudo : _no_value

name	LOC675824 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675824
definition	number : 4 pseudo : _no_value

name	LOC675824 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675824
definition	number : 3 pseudo : _no_value

name	LOC675824 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675824
definition	number : 2 pseudo : _no_value

name	LOC675824 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:675824
definition	number : 1 pseudo : _no_value

name	LOC668234 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668234
definition	number : 5 pseudo : _no_value

name	LOC668234 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668234
definition	number : 4 pseudo : _no_value

name	LOC668234 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668234
definition	number : 3 pseudo : _no_value

name	LOC668234 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668234
definition	number : 2 pseudo : _no_value

name	LOC668234 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668234
definition	number : 1 pseudo : _no_value

name	LOC668238 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668238
definition	number : 3 pseudo : _no_value

name	LOC668238 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668238
definition	number : 2 pseudo : _no_value

name	LOC668238 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668238
definition	number : 1 pseudo : _no_value

name	LOC668244 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668244
definition	number : 1 pseudo : _no_value

name	EG668236 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149271831 GeneID:668236 MGI:3648922
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 1 Protein product : predicted gene, EG668236 pseudo : _no_value transcript_id : XR_033838.1

clone name	MSMg01-059D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353K05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-070J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213E20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-291D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133L05
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-244G23.b	B6Ng01-244G23.g
ACC	GA053571	GA053572
length	977	1,069
definition	B6Ng01-244G23.b	B6Ng01-244G23.g
singlet/doublet	singlet	singlet
BLAST hit	unique	unique
Map location.	(94,562,141 - 94,562,404)	(38,390,331 - 38,391,404)
sequence	gaattcatacgagatgtaacctcaggcttacatgcaaaaaatgaaaaatg ggaccttttagaaagctcttcagcaagggcccatatcacccagtttcaag acctgcatgaaatctcacgtacaatggaagagaactgatttcttaaatta ccctctgagtgcttcattaatacacatgtacacacacacacacacacaca cacacacacacacacacacacacacacacacacaaacacacacacacaca gagtaaataaatagataaaaatttaaaatataaaaaaatacagaaaagta taaatatgtggataaatatgacagacttagaatttatctagaaaacagca gtttgctttttttttcttttttctttttaattagatattttcttcattta cttttcaaatgctatccggaaaatcccctataccctcccctctcacccat catgctccccaacccatgcactcctgcttcctgaccccagcattcccctg tactggggcatatggtcttcccaagaccaagggcctctcttcccattgat tgctgactaggccatcctctgctacatatgcaactagagacaggagctcg gagtggggggtactggttagttcatattgttgatcttcctgtagggttac agacccctttagtttcttgggtagtttctctagcttcttcattaggggcc ctgtgttccatccaatatatgactgtgagcatccacttctgtatttgcca ggcactggcatagcctcacagctctatcagggtcctttcagcaaaatctt gctggcatatgcaatagtgtctgggtttggtggttgtatatgggatggat ccccggatggggcagtctccggatggtcccttcttcttgttccagctccg aactttggctctgtaactccttccatgagtattttgttcccattctaaga aggaatgaagtagcacactttgacttc	gaattctcaatattgactggaaaatgtgaagggacttaaatagaaaatta gttgggcttgtttctggaacgtgcttagattttgcatgataagtcatata tgaatgtgtgtaattttaaaaacattgtatctaaactattgtgcgtgaaa gatttccctatagctcatcagtgaattcctgtgtattgcattcaatcaat accaaatcttaagaaattttttgtttccttctactacttcaaagtcattt tcaaactggctcatgaaacaagttcctgctagtgtttacaatcagataaa ggttttacaggcaagtatatttttaattatttgtaaagttaagatattgt aataacagttcaaattctatctgaaatattacaaaagttagataaatttt caagtaggacaattcagggaaaatatgtttctgaggttttagctatattt ttgtccatatttctcctataatattattttatagatttttctgaaagttt aaatgaactaaacaaacagtaaaaattatatgactcctttcacaaaggga tagaaataggcttgaaatacatgagtaaattgaaaatgcagtaatcatgc atttggctcaaagtaatttatttgtggattgttttacttcaggtaccctt gtggttatattcttaatatattatgttgtattggctaaatatgagcacag gatattgtctctccctcacaaacagtagacaacttgaaacttcaagagag gagatcatgggcttaaggcacagaagttaggaattaattaagtagtatgt taagtatggtaaaggaagacatttgattgaggtctttaggaatgtttttt aaaaatattatacagattttgttttgatcatggctatagactatctgtta atgtagaggcaaacaaaggggagtgttaacatcttcaaaggcttccatcc cagaagtacatttgagcttcaaaggttataattagtgagaaaggtactat agaagtagatagagccagaaaatgccagtggcatagttgtcagcacagtg aacttagtagccttgctta
quality values	Open. Hide. 49 26 27 28 58 32 19 51 51 54 54 58 45 31 35 58 58 58 52 44 58 58 54 41 58 58 58 62 54 62 42 31 46 15 5 14 25 24 30 32 31 28 62 62 62 62 62 62 47 62 62 62 47 42 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 56 62 62 44 62 56 62 62 62 62 62 54 62 54 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 49 62 59 59 59 59 62 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 54 51 44 49 49 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 36 62 62 62 62 62 62 62 62 62 62 51 62 62 56 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 43 56 56 56 38 56 46 62 62 62 54 62 62 62 62 62 62 62 56 62 62 62 56 62 62 62 62 62 47 56 56 62 56 62 62 62 62 62 52 52 41 46 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 52 52 46 62 62 62 62 62 58 58 58 58 58 54 54 54 54 58 54 54 54 54 54 52 52 54 52 52 52 54 54 54 58 58 52 58 58 44 54 47 54 52 58 58 54 54 52 54 54 58 46 52 48 52 58 52 39 41 52 52 52 52 54 58 58 52 52 54 54 52 54 42 42 58 49 54 40 41 41 52 52 58 54 54 52 54 54 54 52 54 54 52 52 46 36 54 54 49 42 39 50 54 50 51 51 51 28 48 49 40 45 37 38 34 50 47 48 48 51 50 58 52 50 43 50 50 53 53 49 58 50 37 51 49 51 54 50 58 33 42 31 50 46 54 58 40 51 53 46 43 43 58 28 50 58 49 58 49 49 58 37 37 41 53 58 37 47 28 46 40 51 52 40 50 49 33 41 49 49 32 49 42 38 39 46 50 46 42 51 50 58 40 33 23 54 39 26 50 27 52 42 50 49 34 33 28 44 50 50 44 40 33 47 51 26 39 35 36 50 50 50 24 50 35 42 50 30 40 50 53 35 50 37 47 49 35 36 40 54 37 33 31 29 40 18 54 54 33 21 51 49 32 54 31 49 16 29 31 30 30 32 52 25 24 42 45 42 39 39 37 39 53 23 40 50 29 39 41 23 45 34 39 27 53 26 31 31 37 25 40 54 31 32 29 54 46 33 31 37 40 20 53 28 31 24 27 41 47 32 28 33 42 23 34 38 40 40 37 38 39 32 33 45 39 32 25 32 31 22 28 49 31 31 34 31 45 52 32 29 35 24 31 31 53 53 35 31 32 33 41 32 26 26 26 46 19 31 35 29 31 37 33 32 32 33 42 31 43 33 32 35 24 38 46 14 18 46 31 31 51 24 51 43 33 28 37 21 28 21 21 12 25 40 27 33 19 31 32 27 24 24 42 42 30 13 22 11 11 31 46 47 37 26 33 17 18 41 32 27 29 12 29 36 24 31 22 14 20 42 29 29 9 8 26 18 17 7 6 13 23 29 24 24 26 19 32 31 25 33 10 37 31 15 27 46 36 46 13 17 31 29 28 31 30 30 26 32 32 25 21 25 17 14 21 36 21 24 34 14 27 29 28 44 32 29 24 15 14 44 32 32 25 34 32 29 17 34 33 18 38 19 27 18 21 24 35 32 18 26 5 23 24 14 34 6 15 24 19 20 21 21 14 8 10 21 20 21	Open. Hide. 62 47 47 42 62 62 62 47 42 47 43 42 43 26 30 17 31 56 62 62 47 62 62 62 44 54 54 62 62 62 62 62 62 59 44 62 59 62 62 62 62 62 62 62 62 62 62 59 62 59 62 49 62 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 59 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 54 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 47 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 39 62 62 58 58 58 54 54 58 58 54 58 54 58 58 58 58 58 58 58 58 54 54 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 54 58 58 58 58 58 58 58 58 54 54 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 54 58 58 49 58 58 58 53 58 58 58 51 58 51 58 58 58 58 51 49 58 54 58 51 46 58 58 58 58 58 58 58 58 39 54 42 53 52 58 51 47 58 58 41 39 58 54 58 58 50 53 53 49 58 52 54 58 58 49 58 49 54 50 54 52 58 58 51 33 53 53 58 34 49 58 58 50 58 58 58 51 58 51 54 51 52 53 54 53 53 42 58 58 58 36 51 58 50 54 44 54 54 39 17 58 53 43 50 53 41 52 58 38 52 50 58 58 46 41 54 35 53 32 54 54 40 54 54 39 34 49 39 51 47 39 23 54 45 26 32 54 54 54 49 54 49 54 54 49 49 52 38 53 53 42 54 38 52 46 51 52 53 45 51 41 35 54 37 54 37 53 54 34 53 45 42 54 41 38 39 29 54 37 44 42 42 53 54 26 53 42 52 43 33 54 32 38 32 33 52 52 31 51 32 53 42 42 52 48 39 40 31 45 31 51 51 34 32 32 32 53 34 41 35 34 39 34 34 34 41 45 52 34 33 31 40 42 28 32 31 46 26 51 31 33 44 24 29 20 30 28 31 45 51 31 30 33 51 23 22 19 25 29 32 43 30 28 35 46 30 38 33 29 21 37 22 32 15 25 8 29 15 38 27 37 35 35 29 29 34 34 36 42 32 30 29 19 26 33 32 31 32 33 25 32 47 32 28 31 24 29 19 21 21 27 36 48 37 31 25 21 31 31 28 11 28 30 31 31 48 37 25 19 23 31 25 13 41 32 48 46 46 46 16 28 48 47 47 33 31 27 30 29 21 14 30 34 31 24 37 25 44 44 22 22 8 44 44 31 20 31 27 31 29 29 26 33 33 38 32 32 24 23 30 31 32 32 31 31 19 27 14 16 30 22 24 38 20 19 18 28 22 26 31 22 48 21 16 12 43 19 8 43 48 27 33 12 25 21 31 6 20 18 16 14 23 16 24 10 34 19 40 30 9 10 32 17 19 13 16 18 32 32 48 32 11 9 10 26 12 7 6 16 11 23 30 24 8 5 7 28 29 18 13 9 28 15 22 11 21 13 13 24 16 17 17 19 20 26 24 18 16 4 15 40 15 7 8 16 6 15 27 21 20 11 19 19 38 23 21 5 11 5 10 6 17 21 6 15 16 11 12 5 32 38 26 27 17 9 20 13 4 4 7 18 12 13 19 18 5 24 18 3 2 6 15 7 20 5 8 6 10 13 23 5 6 22 5 8 19 4 6 21 5 16 17 13 21 14 17 16 7 8

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_94562141_94562404
seq2: B6Ng01-244G23.b_405_679

seq1  TTTTTTTTCTTTTTTCTTTT--ATTAGATATTTTCTTCATTTACATTTCA  48
      ||||||||||||||||||||  |||||||||||||||||||||| |||||
seq2  TTTTTTTTCTTTTTTCTTTTTAATTAGATATTTTCTTCATTTACTTTTCA  50

seq1  AATGCTATCCCAAAGGTCCCCTATACCCTCCC----CACCCACTCTGTTC  94
      ||||||||||  ||  ||||||||||||||||    ||||||   || ||
seq2  AATGCTATCCGGAAAATCCCCTATACCCTCCCCTCTCACCCATCATGCTC  100

seq1  CCTTACCCACCCACTCCCACTTCTTGGCCCTGGCATTACCCTGTACTGGG  144
      ||  |||||  ||||||  |||| || |||  ||||| ||||||||||||
seq2  CCCAACCCATGCACTCCTGCTTCCTGACCCCAGCATTCCCCTGTACTGGG  150

seq1  GCATAT-AAGTTTGCAATACCAAGGGGCCTCTCTTCCCAGTGATGGCTGA  193
      ||||||    ||  ||| ||||| ||||||||||||||| |||| |||||
seq2  GCATATGGTCTTCCCAAGACCAA-GGGCCTCTCTTCCCATTGATTGCTGA  199

seq1  CTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTC-----TG  238
      |||||||||| ||||||||||||||| ||||||||| ||||||      |
seq2  CTAGGCCATCCTCTGCTACATATGCAACTAGAGACAGGAGCTCGGAGTGG  249

seq1  GGGGTACTGGTTAGTTCATATTGTTG  264
      ||||||||||||||||||||||||||
seq2  GGGGTACTGGTTAGTTCATATTGTTG  275

seq1: chr11_38390331_38391404
seq2: B6Ng01-244G23.g_64_1132

seq1  GAATTCTCAATATTGACTGGAAAATGTGAAGGGACTTAAATAGAAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATATTGACTGGAAAATGTGAAGGGACTTAAATAGAAAATTA  50

seq1  GTTGGGCTTGTTTCTGGAACGTGCTTAGATTTTGCATGATAAGTCATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCTTGTTTCTGGAACGTGCTTAGATTTTGCATGATAAGTCATATA  100

seq1  TGAATGTGTGTAATTTTAAAAACATTGTATCTAAACTATTGTGCGTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGTGTAATTTTAAAAACATTGTATCTAAACTATTGTGCGTGAAA  150

seq1  GATTTCCCTATAGCTCATCAGTGAATTCCTGTGTATTGCATTCAATCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCCTATAGCTCATCAGTGAATTCCTGTGTATTGCATTCAATCAAT  200

seq1  ACCAAATCTTAAGAAATTTTTTGTTTCCTTCTACTACTTCAAAGTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCTTAAGAAATTTTTTGTTTCCTTCTACTACTTCAAAGTCATTT  250

seq1  TCAAACTGGCTCATGAAACAAGTTCCTGCTAGTGTTTACAATCAGATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTGGCTCATGAAACAAGTTCCTGCTAGTGTTTACAATCAGATAAA  300

seq1  GGTTTTACAGGCAAGTATATTTTTAATTATTTGTAAAGTTAAGATATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACAGGCAAGTATATTTTTAATTATTTGTAAAGTTAAGATATTGT  350

seq1  AATAACAGTTCAAATTCTATCTGAAATATTACAAAAGTTAGATAAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGTTCAAATTCTATCTGAAATATTACAAAAGTTAGATAAATTTT  400

seq1  CAAGTAGGACAATTCAGGGAAAATATGTTTCTGAGGTTTTAGCTATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGGACAATTCAGGGAAAATATGTTTCTGAGGTTTTAGCTATATTT  450

seq1  TTGTCCATATTTCTCCTATAATATTATTTTATAGATTTTTCTGAAAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATATTTCTCCTATAATATTATTTTATAGATTTTTCTGAAAGTTT  500

seq1  AAATGAACTAAACAAACAGTAAAAATTATATGACTCCTTTCACAAAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACTAAACAAACAGTAAAAATTATATGACTCCTTTCACAAAGGGA  550

seq1  TAGAAATAGGCTTGAAATACATGAGTAAATTGAAAATGCAGTAATCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAGGCTTGAAATACATGAGTAAATTGAAAATGCAGTAATCATGC  600

seq1  ATTTGGCTCAAAGTAATTTATTTGTGGATTGTTTTACTTCAGGTACCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTCAAAGTAATTTATTTGTGGATTGTTTTACTTCAGGTACCCTT  650

seq1  GTGGTTATATTCTTAATATATTATGTTGTATTGGCTAAATATGAGCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATATTCTTAATATATTATGTTGTATTGGCTAAATATGAGCACAG  700

seq1  GATATTGTCTCTCCCTCACAAACAGTAGACAACTTGAAACTTCAAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTCTCTCCCTCACAAACAGTAGACAACTTGAAACTTCAAGAGAG  750

seq1  GAGATCATGGGCTTAAGGCACAGAAGTTAGGAATTAATTAAGTAGTATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATGGGCTTAAGGCACAGAAGTTAGGAATTAATTAAGTAGTATGT  800

seq1  TAAGTATGGTAAAGGAAGACATTTGATTGAGGTCTTTAGGAATGTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATGGTAAAGGAAGACATTTGATTGAGGTCTTTAGGAATGTTTTTT  850

seq1  AAAAATATTATACAGATTTTGTTTTGATCATGGCTATAGACTATCTGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTATACAGATTTTGTTTTGATCATGGCTATAGACTATCTGTTA  900

seq1  ATGTAGAGGCAAACAAAGGGGAGTGTTAACATCTTCAAA-GCTTCCATCC  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGTAGAGGCAAACAAAGGGGAGTGTTAACATCTTCAAAGGCTTCCATCC  950

seq1  CAGAAGTACATTTGAGCTTCAAAGGTTATAATTAGTGAAGAAAGGTACTA  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGAAGTACATTTGAGCTTCAAAGGTTATAATTAGTG-AGAAAGGTACTA  999

seq1  TAGAAGTAGGATAGAGCCAGGAAAATGCCAGTGGGCATAGTTTGGTCAGC  1049
      |||||||| |||||||||| |||||||||||| |||||||||  ||||||
seq2  TAGAAGTA-GATAGAGCCA-GAAAATGCCAGT-GGCATAGTT--GTCAGC  1044

seq1  ACAGTG-ACCTAGTAGCCTTTGCTTA  1074
      |||||| || |||||||| |||||||
seq2  ACAGTGAACTTAGTAGCC-TTGCTTA  1069

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information