BAC Information

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BAC

Clone NameB6Ng01-249B12
ChromosomeX (Build37)
Map Location 40,193,142 - 40,298,731
singlet/doubletdoublet
Overlap geneOdz1
Upstream geneThoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2, LOC100039899, Sh2d1a
Downstream geneGm362, LOC100039977, LOC100039987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249B12.bB6Ng01-249B12.g
ACCGA057001GA057002
length3491,202
definitionB6Ng01-249B12.b B6Ng01-249B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,298,383 - 40,298,731)(40,193,142 - 40,194,313)
sequence
tccctttctcttcagctgctctttctattgttgcttggatctgcctcagc
agcatggccatacacatacataaacattcgcactttttgagattataaca
cgattacatttctcccttctcttttcactctgaaccatcctgtataccct
tttgttcaaattcatgaactctttttgcttagttcttctgtgcattgtta
tatttgttatgttaaaacctcttgagcctttcctcatccatttcagcatc
tcctaggctatctctttaatagaattcatttttctcctcaaaccacttga
atgcttaacaggtgattatatatttatatgtgtgtgtgtggggtgtgtg

gaattctcagcaagtacctaagtggtagaccttacaaacatacttttcaa
ccagtttcaacaatatataccttctgcaaaaataagactgttgttacttg
attgggctaattattattccttaactacagatttggattcatggtctcat
aacaaatagagttgggggcaaatttagagatgagctggtcctggtatgac
gatatgtttgtcaaagctttaatagctgttaaagttaaaggaaagagggg
tttgacagggatgtacttccctctcttatttgatctacagaactgtggcc
tctgtggttgtatttgcacaagtaatttctgaccaatatttattttgcat
aaggattttcctcctggactctcttaaggggctgaaagcaaactccccat
ttttcaaataagaaactagatccaagagaagtgaagctacagttgctatc
tggacttggctacagaatgttcaggacaagatataaattgtgtcatatca
atcaatggagtgttgtttacatggtcatatattcagcagaaactgactag
aaaacatcagtttttccccttcagtgttgcaaagatagatcttctggaat
gaatttcaaagaagtgccactcgccccaccaaggccagtattttgcaaaa
ctgtaaaaaccctgaagctgcctttggtatatttcagttcttttttccta
ccacttttctttgttccggtgttctattttgacattcaacttggaagaat
tcattgttgaacttctcaataaattttatcctcagtcagatagctactaa
aaatgttaggattttacttgatcctgatgctagagaaataatagttaagc
aatattcccaaccttttagtgttctgggaaactgtttactacacacacac
acacacacacacacacacacacactcacacacactcatacgatgcactga
aaacataaaaataccaccccttctctaaacagcatggttttggtaaaaag
tatccctgtccattcctcctaataagaatttgccctatgaacaatgaaca
gttaggcttgttttcatctaaggatgcatggcccttatatcctaaactaa
tcctcccaataattacccctatggccccatatgtaattgtaccctcctac
ctttacacatcaatggagagcttccctgtgccaagcagaataaagaacct
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_40298383_40298731
seq2: B6Ng01-249B12.b_55_403 (reverse)

seq1  CACACACCCCACACACACACATATAAATATATAATCACCTGTTAAGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCCCACACACACACATATAAATATATAATCACCTGTTAAGCATT  50

seq1  CAAGTGGTTTGAGGAGAAAAATGAATTCTATTAAAGAGATAGCCTAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGTTTGAGGAGAAAAATGAATTCTATTAAAGAGATAGCCTAGGAG  100

seq1  ATGCTGAAATGGATGAGGAAAGGCTCAAGAGGTTTTAACATAACAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAAATGGATGAGGAAAGGCTCAAGAGGTTTTAACATAACAAATAT  150

seq1  AACAATGCACAGAAGAACTAAGCAAAAAGAGTTCATGAATTTGAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCACAGAAGAACTAAGCAAAAAGAGTTCATGAATTTGAACAAAA  200

seq1  GGGTATACAGGATGGTTCAGAGTGAAAAGAGAAGGGAGAAATGTAATCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATACAGGATGGTTCAGAGTGAAAAGAGAAGGGAGAAATGTAATCGT  250

seq1  GTTATAATCTCAAAAAGTGCGAATGTTTATGTATGTGTATGGCCATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATCTCAAAAAGTGCGAATGTTTATGTATGTGTATGGCCATGCTG  300

seq1  CTGAGGCAGATCCAAGCAACAATAGAAAGAGCAGCTGAAGAGAAAGGGA  349
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAGATCCAAGCAACAATAGAAAGAGCAGCTGAAGAGAAAGGGA  349


seq1: chrX_40193142_40194313
seq2: B6Ng01-249B12.g_67_1268

seq1  GAATTCTCAGCAAGTACCTAAGTGGTAGACCTTACAAACATACTTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCAAGTACCTAAGTGGTAGACCTTACAAACATACTTTTCAA  50

seq1  CCAGTTTCAACAATATATACCTTCTGCAAAAATAAGACTGTTGTTACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCAACAATATATACCTTCTGCAAAAATAAGACTGTTGTTACTTG  100

seq1  ATTGGGCTAATTATTATTCCTTAACTACAGATTTGGATTCATGGTCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCTAATTATTATTCCTTAACTACAGATTTGGATTCATGGTCTCAT  150

seq1  AACAAATAGAGTTGGGGGCAAATTTAGAGATGAGCTGGTCCTGGTATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAGAGTTGGGGGCAAATTTAGAGATGAGCTGGTCCTGGTATGAC  200

seq1  GATATGTTTGTCAAAGCTTTAATAGCTGTTAAAGTTAAAGGAAAGAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTTTGTCAAAGCTTTAATAGCTGTTAAAGTTAAAGGAAAGAGGGG  250

seq1  TTTGACAGGGATGTACTTCCCTCTCTTATTTGATCTACAGAACTGTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGGGATGTACTTCCCTCTCTTATTTGATCTACAGAACTGTGGCC  300

seq1  TCTGTGGTTGTATTTGCACAAGTAATTTCTGACCAATATTTATTTTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTTGTATTTGCACAAGTAATTTCTGACCAATATTTATTTTGCAT  350

seq1  AAGGATTTTCCTCCTGGACTCTCTTAAGGGGCTGAAAGCAAACTCCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTTCCTCCTGGACTCTCTTAAGGGGCTGAAAGCAAACTCCCCAT  400

seq1  TTTTCAAATAAGAAACTAGATCCAAGAGAAGTGAAGCTACAGTTGCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATAAGAAACTAGATCCAAGAGAAGTGAAGCTACAGTTGCTATC  450

seq1  TGGACTTGGCTACAGAATGTTCAGGACAAGATATAAATTGTGTCATATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGGCTACAGAATGTTCAGGACAAGATATAAATTGTGTCATATCA  500

seq1  ATCAATGGAGTGTTGTTTACATGGTCATATATTCAGCAGAAACTGACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGAGTGTTGTTTACATGGTCATATATTCAGCAGAAACTGACTAG  550

seq1  AAAACATCAGTTTTTCCCCTTCAGTGTTGCAAAGATAGATCTTCTGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCAGTTTTTCCCCTTCAGTGTTGCAAAGATAGATCTTCTGGAAT  600

seq1  GAATTTCAAAGAAGTGCCACTCGCCCCACCAAGGCCAGTATTTTGCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAAAGAAGTGCCACTCGCCCCACCAAGGCCAGTATTTTGCAAAA  650

seq1  CTGTAAAAACCCTGAAGCTGCCTTTGGTATATTTCAGTTCTTTTTTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAAACCCTGAAGCTGCCTTTGGTATATTTCAGTTCTTTTTTCCTA  700

seq1  CCACTTTTCTTTGTTCCGGTGTTCTATTTTGACATTCAACTTGGAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTCTTTGTTCCGGTGTTCTATTTTGACATTCAACTTGGAAGAAT  750

seq1  TCATTGTTGAACTTCTCAATAAATTTTATCCTCAGTCAGATAGCTACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTGAACTTCTCAATAAATTTTATCCTCAGTCAGATAGCTACTAA  800

seq1  AAATGTTAGGATTTTACTTGATCCTGATGCTAGAGAAATAATAGTTAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAGGATTTTACTTGATCCTGATGCTAGAGAAATAATAGTTAAGC  850

seq1  AATATTCCCAACCTTTTAGTGTTCTGGGAAACTGTTTACTACACACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCCAACCTTTTAGTGTTCTGGGAAACTGTTTACTACACACACAC  900

seq1  ACACACACACACACACACACACACTCACACACACTCATACGATGCACTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACTCACACACACTCATACGATGCACTGA  950

seq1  AAACAT-AAAATAC--ACCCTTCTCTAAACAGCATG--TTTGGT-AAAAG  994
      |||||| |||||||   |||||||||||||||||||  |||||| |||||
seq2  AAACATAAAAATACCACCCCTTCTCTAAACAGCATGGTTTTGGTAAAAAG  1000

seq1  TAT-CCTGTCCATTCCTCCTAATAAG-ATTTG-CCTATG-ACAATG-ACA  1039
      ||| |||||||||||||||||||||| ||||| |||||| |||||| |||
seq2  TATCCCTGTCCATTCCTCCTAATAAGAATTTGCCCTATGAACAATGAACA  1050

seq1  G-TAAGCTTGTTTTCATCTAA-GATGCATGGCC---TTATTCTTAACT-A  1083
      | || |||||||||||||||| |||||||||||    ||| || |||| |
seq2  GTTAGGCTTGTTTTCATCTAAGGATGCATGGCCCTTATATCCTAAACTAA  1100

seq1  TTCTCC--ATAATTACCCTTATG--CCCATATGTAATTGTA-CCTCTTAC  1128
      | ||||  |||||||||| ||||  |||||||||||||||| |||| |||
seq2  TCCTCCCAATAATTACCCCTATGGCCCCATATGTAATTGTACCCTCCTAC  1150

seq1  TTT---ACATCAATG--AAGCTTCTCTGTGC--AGCAGATTAAAG-ACCT  1170
       ||   |||||||||   |||||| ||||||  |||||| ||||| ||||
seq2  CTTTACACATCAATGGAGAGCTTCCCTGTGCCAAGCAGAATAAAGAACCT  1200

seq1  TT  1172
      ||
seq2  TT  1202


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