MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-249J18
Chromosome	X (Build37)
Map Location	38,746,602 - 38,747,527
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100039769, LOC385344
Downstream gene	Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100039769 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039769
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	LOC385344 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:385344
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 91 ESTs, 2 Proteins pseudo : _no_value

name	Gria3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53623 MGI:95810
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039802 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039802
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC676077 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:676077
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Thoc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:331401 MGI:2442413
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665488 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665488
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	EG333830 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:333830 MGI:3646830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins

name	LOC100039838 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039838
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Birc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11798 MGI:107572
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stag2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20843 MGI:1098583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100039769 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271523 GeneID:100039769
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : similar to pol protein transcript_id : XM_001473464.1

name	Gria3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84781716 GeneID:53623 MGI:95810
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutamate receptor, ionotropic, AMPA3 (alpha 3) transcript_id : NM_016886.2

name	Thoc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125656162 GeneID:331401 MGI:2442413
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : THO complex 2 transcript_id : NM_001033422.1

name	EG333830 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407343 GeneID:333830 MGI:3646830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins product : predicted gene, EG333830 transcript_id : XM_912534.2

name	Birc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753087 GeneID:11798 MGI:107572
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : baculoviral IAP repeat-containing 4 transcript_id : NM_009688.1

name	Stag2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118150673 GeneID:20843 MGI:1098583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : stromal antigen 2 transcript_id : NM_001077712.1

name	Stag2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118150671 GeneID:20843 MGI:1098583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : stromal antigen 2 transcript_id : NM_021465.3

name	LOC100039769 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271524 GeneID:100039769
definition	codon_start : 1 product : similar to pol protein protein_id : XP_001473514.1

name	Gria3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84781717 CCDS:CCDS30097.1 GeneID:53623 MGI:95810
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005234 - glutamate-gated ion channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004970 - ionotropic glutamate receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : cAMP-dependent Rap1 guanine-nucleotide exchange factor; AMPA-selective glutamate receptor 3 (GluR-3) flip product : glutamate receptor, ionotropic, AMPA3 (alpha 3) protein_id : NP_058582.2

name	Thoc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125656163 GeneID:331401 MGI:2442413
definition	codon_start : 1 note : transcription/export complex subunit 2 product : THO complex subunit 2 protein_id : NP_001028594.1

name	EG333830 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407344 GeneID:333830 MGI:3646830
definition	codon_start : 1 product : similar to ribosomal protein S7 protein_id : XP_917627.2

name	Birc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753088 CCDS:CCDS30098.1 GeneID:11798 MGI:107572
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IDA]; GO:0006915 - apoptosis [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IDA]; GO:0043154 - negative regulation of caspase activity [Evidence IDA] codon_start : 1 exception : mismatches in translation note : apoptosis inhibitor 3; X-linked inhibitor of apoptosis product : baculoviral IAP repeat-containing 4 protein_id : NP_033818.1

name	Stag2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118150674 GeneID:20843 MGI:1098583
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 note : nuclear protein SA2 product : stromal antigen 2 protein_id : NP_001071180.1

name	Stag2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118150672 GeneID:20843 MGI:1098583
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 note : nuclear protein SA2 product : stromal antigen 2 protein_id : NP_067440.3

name	LOC100039802 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039802
definition	number : 3 pseudo : _no_value

name	LOC100039802 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039802
definition	number : 2 pseudo : _no_value

name	LOC100039802 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039802
definition	number : 1 pseudo : _no_value

name	LOC676077 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676077
definition	number : 4 pseudo : _no_value

name	LOC676077 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676077
definition	number : 3 pseudo : _no_value

name	LOC676077 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676077
definition	number : 2 pseudo : _no_value

name	LOC676077 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676077
definition	number : 1 pseudo : _no_value

name	LOC665488 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665488
definition	number : 1 pseudo : _no_value

name	LOC665488 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665488
definition	number : 2 pseudo : _no_value

name	LOC100039838 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039838
definition	number : 1 pseudo : _no_value

name	LOC100039838 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039838
definition	number : 2 pseudo : _no_value

name	LOC100039838 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039838
definition	number : 3 pseudo : _no_value

name	LOC385344 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271554 GeneID:385344
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 91 ESTs, 2 Proteins product : similar to 3-phosphoglycerate dehydrogenase pseudo : _no_value transcript_id : XR_032497.1

clone name	MSMg01-344D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-197E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242A09
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-249J18.b	B6Ng01-249J18.g
ACC	GA057386	GA057387
length	1,048	945
definition	B6Ng01-249J18.b	B6Ng01-249J18.g
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattctttgttcagttctgagccccattttttaagggggttatttgatt ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca ttagatcccatttgtcaattctcgatcttacagcacaagccattgctgtt ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt tatccttgagaagagtttttgctatcctcggttttttgttattccagatg aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt gatggggattgcattgaatctgtagattgcttttggcaagatagccattt ttataatgttgggtcctgccaatccatgagcatgggagatctttccatct tctgagatcttctttaatttctttcttcagggacttgaagtttttatcat acagatcctttcacttccttcgttagagtcacgccgagattattttatat tattgtggctattgagaaaggtgttgtttccctaaatttctttctcagcc tgttattctttgtgtagaggaagggcattgacttgtttgagtaatttt	gaattcagagtctttataggaatgaagaagataactagagacagttgaaa tttagcctgtggctaattcttaaggaggaatagcaattgctgattttatg aaattttaatctggtataatctgtgtgctgtgggcatatccttttgaatc attgtgatatcagtttcatgagcatagtagtagtattttgaagcaaaggg ggaaaaaaaggcacattcaacacttttcagtgttctgggtgattacacac aaaattaaaatcagtgattttttttattgaaaatgtctatattatacaac cacttttgaggcagaggcaggaagattgctacacatttggggttgtcctt atctacatagtgagttccacgtgctccagaggggcattgtaagaacccat ctaaagccctacaaaataaacaactaagcatataaacaaattcacaaaca aacaaacaaacaaaaccatggatgtcctaggtcaagagaatctgttgttt gttcaaatataagaaaatgtgaatttcggtggagttttgtgcttcactag aaaatccctgaagattttctctgggctgtgaacttgtttgttttgtaatt gctatcaggctgatggaataagtgatgctgccgttggttatggagcctag aggaaagatgtctacaggcatttttgaaggtagagtccatggacagaact aaaactcttcggaagcacaggacaacaatgagttatgtgacacacaataa aggacaatccagctccaaacgacaatgtgtttacaagaagaggtcttttt tgtgggaaaagtgatatgatatatacccacatagcattctttagagacat gaggtgtgtggcttaggctctgaaaatcttttgacctcttatcttatgtt ctggtcaaaacaactggtgaatgtgaccctctggaagtaatttta
quality values	Open. Hide. 58 36 25 26 58 58 58 58 58 49 62 62 31 16 54 62 62 62 47 49 62 62 62 62 62 47 41 62 62 62 62 62 47 56 44 59 62 62 62 59 62 62 62 59 62 62 62 62 59 62 54 62 62 62 59 62 62 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 54 62 62 54 54 54 62 59 59 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 54 54 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 62 62 62 56 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 47 54 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 58 54 58 54 52 58 58 58 58 58 58 58 54 58 58 54 54 38 36 43 49 58 58 58 58 58 54 52 41 49 53 46 54 52 58 54 54 54 58 58 54 58 45 41 58 54 47 52 54 54 46 50 45 21 58 54 58 54 54 58 58 54 52 52 52 54 54 52 46 58 40 58 49 30 58 46 54 58 58 58 58 50 50 49 52 53 51 49 54 52 39 42 32 58 58 58 58 58 58 46 58 50 50 50 50 40 50 50 47 31 49 49 53 53 58 54 50 43 22 58 40 50 58 49 52 51 42 50 49 39 32 37 21 53 50 53 46 53 51 43 28 52 58 29 58 27 29 58 50 58 26 51 33 43 37 50 39 26 58 58 58 50 49 39 54 49 49 51 35 32 32 47 53 31 42 33 35 33 46 39 45 49 54 37 41 32 39 35 39 51 42 53 54 54 51 35 49 29 20 53 40 42 32 40 33 31 31 35 39 54 54 54 51 34 41 40 37 29 51 8 33 22 54 24 29 12 54 42 40 29 28 31 31 31 23 31 25 37 40 53 12 32 27 31 28 52 31 53 23 35 20 28 29 53 35 35 26 21 31 32 42 30 45 32 31 31 15 33 21 31 21 33 32 25 46 26 32 29 31 51 35 31 31 51 31 30 37 33 26 17 21 46 33 24 21 30 33 36 25 32 31 34 46 46 46 25 13 19 25 12 9 10 31 26 31 22 26 19 7 19 48 15 31 26 32 23 11 15 28 20 24 18 11 29 23 32 23 39 29 11 14 27 31 30 30 33 21 36 20 11 7 7 19 12 46 46 36 31 26 31 30 18 19 16 10 31 28 17 22 7 29 19 22 26 21 20 9 16 43 10 33 44 9 21 6 19 25 19 32 32 18 48 33 16 6 25 13 18 43 14 24 30 34 9 6 4 13 25 8 16 22 32 22 25 7 7 6 30 26 14 39 24 17 10 30 6 16 10 14 7 7 12 33 6 29 15 21 8 13 11 11 24 13 18 4 8 11 27 18 8 23 8 25 7 10 10 28 28 10	Open. Hide. 62 47 62 47 62 42 37 62 62 62 56 56 56 38 30 51 56 51 43 43 62 62 59 62 62 59 62 62 62 62 59 46 62 62 62 62 59 62 62 62 59 62 59 62 62 62 54 59 62 62 62 62 54 54 59 62 62 62 62 54 59 62 62 59 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 59 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 59 59 54 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 56 62 62 62 62 62 62 62 62 59 54 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 59 62 62 62 62 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 59 62 59 62 51 59 59 56 54 54 62 62 62 62 62 62 62 50 59 62 59 62 62 62 62 62 62 62 62 59 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 59 59 59 59 59 59 62 62 62 62 62 62 62 62 54 62 62 62 62 59 56 50 62 59 62 59 59 59 62 62 62 62 62 62 62 62 62 59 62 62 56 62 56 62 62 62 62 62 62 62 59 62 62 59 59 59 59 59 62 62 62 62 62 62 59 62 62 54 54 62 62 59 59 59 59 59 56 56 50 48 56 56 59 59 59 51 41 62 59 62 62 62 62 62 62 62 59 59 62 62 56 62 59 59 59 56 51 59 59 59 59 62 62 62 62 62 62 62 62 62 59 59 62 62 59 51 51 51 50 49 56 59 59 56 59 38 59 51 59 62 62 59 62 62 62 56 56 56 62 62 62 51 59 56 56 56 59 59 62 62 62 41 51 45 56 43 45 46 62 51 59 59 59 59 62 59 62 62 62 59 59 62 62 62 59 56 59 34 59 46 62 59 62 59 62 59 59 62 62 62 62 62 62 62 62 59 62 59 62 59 59 59 51 62 62 62 59 59 59 62 56 59 62 62 62 62 59 59 56 62 62 62 62 62 62 59 62 59 62 62 62 56 62 62 62 62 62 56 62 62 62 62 56 56 62 62 62 56 62 62 62 62 62 47 62 62 56 62 56 51 29 35 32 56 51 47 47 56 47 51 56 62 62 62 47 62 51 38 51 37 37 39 42 62 56 62 62 47 32 56 56 39 62 56 56 56 39 43 45 47 56 56 56 51 32 31 62 39 56 62 47 21 56 62 54 31 62 47 56 42 47 62 47 38 56 56 50 47 39 56 42 46 39 38 32 33 39 43 37 41 41 47 39 47 47 37 32 13 41 22 32 47 39 56 38 62 32 50 50 56 62 20 41 30 33 47 43 37 27 43 62 56 38 41 52 52 43 24 12 37 14 62 23 35 31 38 27 33 34 36 31 39 35 31 19 21 34 42 32 32 35 20 35 43 27 21 24 21 14 18 43 31 24 32 10 23 22 10 31 34 37 31 16 42 15 23 25 28 28 20 18 39 17 14 24 30 21 23 21 23 27 26 28 17 9 25 10 12 22 17 25 22 13 7 17 28 32 33 12 9 22 34 27 34 17 28 30 50 21 50 37 32 42 46 42 30 27 19 27 34 19 21 12 25 20 35 15 13 10 8 9 8 8 8 11 13 28 37 8 37 30 30 27 16 27 25 25 24 22 13 20 28 20 15 22 27 41 42 35 25 13 12 15 21 10 16 13 29 6 20 30 23 15 7 13 10 15 23 28 39 29 10 17 13 18 9 13 20 22 25 11 10 12 15 12 9 6 9 9 8 12 9 13 10 22 13 32 24 47 27 44 43 37 39 8 17 7 40 25 25 18 19 13 7 22 29 46 8 25 19 13 9 11 18 8 11 16 16 30 29 27 7 16 9 13 32 11 9 10 6 14 11 13 13 11 11 21 33 11 21 33 26 24 31 25 37 7 19 12 16 41 40 29 33 12 12 12 16 12 23 32 30 31

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_38746602_38747527
seq2: B6Ng01-249J18.g_67_1009 (reverse)

seq1  AAATTACTTCCAGA-GGTCACATTCA-CAGTTGTTTTGA-CAGAAC-TAT  46
      |||||||||||||| ||||||||||| |||||||||||| |||||| || 
seq2  AAATTACTTCCAGAGGGTCACATTCACCAGTTGTTTTGACCAGAACATAA  50

seq1  GATTAGA-GTC--AAGGTTTTCAGAGCCTTAG-CACAACACTCATGTCTC  92
      ||| ||| |||  ||| |||||||||||| || ||||   ||||||||||
seq2  GATAAGAGGTCAAAAGATTTTCAGAGCCTAAGCCACACACCTCATGTCTC  100

seq1  TAAAG-ATGCTATGTGTGTATATATCATATCACTTTT-CCACAAAA---G  137
      ||||| |||||||||| |||||||||||||||||||| ||||||||    
seq2  TAAAGAATGCTATGTGGGTATATATCATATCACTTTTCCCACAAAAAAGA  150

seq1  CCTC-TCTTGTAAACACATTGTCGTTTGGAGCTGGATTGTCCTTTATTGT  186
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTGTAAACACATTGTCGTTTGGAGCTGGATTGTCCTTTATTGT  200

seq1  GTGTCACAT-ACTCATTGTTGTCCTGTGCTTCCGAAGAGTTTTAGTTCTG  235
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACATAACTCATTGTTGTCCTGTGCTTCCGAAGAGTTTTAGTTCTG  250

seq1  TCCATGGACTCTACCTTC-AAAATGCCTGTAGACATCTTTCCTCTAGGCT  284
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCATGGACTCTACCTTCAAAAATGCCTGTAGACATCTTTCCTCTAGGCT  300

seq1  CCATAACCAACGGCAGCATCACTTATTCCATCAGCCTGATAGCAATTAC-  333
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCATAACCAACGGCAGCATCACTTATTCCATCAGCCTGATAGCAATTACA  350

seq1  AAACAAACAAGTTCACAGCCCAGAGAAAATCTTCAGGGATTTTCTAGTGA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAGTTCACAGCCCAGAGAAAATCTTCAGGGATTTTCTAGTGA  400

seq1  AGCACAAAACTCCACCGAAATTCACATTTTCTTATATTTGAACAAACAAC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAAACTCCACCGAAATTCACATTTTCTTATATTTGAACAAACAAC  450

seq1  AGATTCTCTTGACCTAGGACATCCATGGTTTTGTTTGTTTGTTTGTTTGT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCTTGACCTAGGACATCCATGGTTTTGTTTGTTTGTTTGTTTGT  500

seq1  GAATTTGTTTATATGCTTAGTTGTTTATTTTGTAGGGCTTTAGATGGGTT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTTTATATGCTTAGTTGTTTATTTTGTAGGGCTTTAGATGGGTT  550

seq1  CTTACAATGCCCCTCTGGAGCACGTGGAACTCACTATGTAGATAAGGACA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAATGCCCCTCTGGAGCACGTGGAACTCACTATGTAGATAAGGACA  600

seq1  ACCCCAAATGTGTAGCAATCTTCCTGCCTCTGCCTCAAAAGTGGTTGTAT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAATGTGTAGCAATCTTCCTGCCTCTGCCTCAAAAGTGGTTGTAT  650

seq1  AATATAGACATTTTCAATAAAAAAAATCACTGATTTTAATTTTGTGTGTA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGACATTTTCAATAAAAAAAATCACTGATTTTAATTTTGTGTGTA  700

seq1  ATCACCCAGAACACTGAAAAGTGTTGAATGTGCCTTTTTTTCCCCCTTTG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCAGAACACTGAAAAGTGTTGAATGTGCCTTTTTTTCCCCCTTTG  750

seq1  CTTCAAAATACTACTACTATGCTCATGAAACTGATATCACAATGATTCAA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAATACTACTACTATGCTCATGAAACTGATATCACAATGATTCAA  800

seq1  AAGGATATGCCCACAGCACACAGATTATACCAGATTAAAATTTCATAAAA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATGCCCACAGCACACAGATTATACCAGATTAAAATTTCATAAAA  850

seq1  TCAGCAATTGCTATTCCTCCTTAAGAATTAGCCACAGGCTAAATTTCAAC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAATTGCTATTCCTCCTTAAGAATTAGCCACAGGCTAAATTTCAAC  900

seq1  TGTCTCTAGTTATCTTCTTCATTCCTATAAAGACTCTGAATTC  926
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAGTTATCTTCTTCATTCCTATAAAGACTCTGAATTC  943

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information