BAC Information

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BAC

Clone NameB6Ng01-249M15
ChromosomeX (Build37)
Map Location 107,328,780 - 107,329,332
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3bgrl, EG622976, LOC100042831, LOC213474, LOC245573
Downstream geneEG634340, LOC668530, LOC100043316, Pou3f4, Cylc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249M15.bB6Ng01-249M15.g
ACCGA057517GA057518
length9551,188
definitionB6Ng01-249M15.b B6Ng01-249M15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaataggcttcttgtattctcataggaatctctttctttaggtta
gggaagttttcttctatactttttttgaagatatttactggccctttaag
ttggggatcttcactctcttctatacctattatctttaggtttggtcttc
tcattgtgtcctggatttcctggctgttttggcttaggagctttttgcat
cttacattttctttgactgttgtgtcaatgttttctatggtatcttctgc
acctgctagtctctcttctatcatttgtattctgttggtgatgcttgtat
ctataactcctgatctctttcctaggtttactactttcagggttgtctcc
ctttgtgattttttttattgtttctgtttccatttttacatcctggatgg
ttttgttcaactccttcacctgtttgattgtgttttcctgtaattcaagg
gatttttgtgttttgtctttcagggctccttcctgtttagctgtattctc
ctgtattttttaagggagttatttatgtccttcttaaagtcctctatcat
catgagatgtgattttaaattagagtcttgcttttccagtttgttgtggt
aaccaggacttgctgtggtggtagaactatgttctgatgatgccaagtag
ccttggtttctgttgcttaggttcttgggcttacctcttgccatctgttt
atctctgttgctaattggtcttgctgtctatgattggaacttgtccctcc
tgtgggcctgtgagcctgtgattttaaatgtgtcagcactcctggtgaga
ccatcattctctgggcaggatttgggtttggagggctgtggggcagcctt
agctccgaagcacagatggagactagaagcccaaattttattttatctgg
ttgttttttttatagatggataaaattatttgtacacattgattctgttg
atgaa

gaattctcacccgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagatttttattgaa
aggacgcagatgtagctgtctcttgtgagactattgcccgggcccagcaa
acacagaagtggatgctcacagtcagctaatggatggatcatagggctcc
caatggaggagctagagaaagtagccaaaggagctaaagggatctgcaac
cctataggtgaacacattatgagctaccagtaccccggagctctggactc
tagctgcatatatattcaaaagaatggctatcgcatcactggaaagagag
gccattgactgcaactttaattgcccaatacagggattccagctaaaagg
gatgggttggcagggaatggcggtcgtgctacgcagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_107328780_107329332
seq2: B6Ng01-249M15.b_53_217 (reverse)

seq1  CCAGGAAATCCAGGACACAATGAGAAGACCAAACCTAAAGATAATAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CCAGGAAATCCAGGACACAATGAGAAGACCAAACCTAAAGATAATAGGTA  50

seq1  TAGATGAGAATGAAGATTTTTAACTTTAAGGGCCAG-CAATAT-------  92
      |||| |||| |||||||    ||||| |||||||||  |||||       
seq2  TAGAAGAGAGTGAAGATCCCCAACTTAAAGGGCCAGTAAATATCTTCAAA  100

seq1  ----GTATCAGAAGA----TGGCCTAGTCGGCCATCAGTGGAAAGAGAGA  134
          |||| ||||||    |  ||||       | |    ||||||||  
seq2  AAAAGTAT-AGAAGAAAACTTCCCTA-------ACCTAAAGAAAGAGATT  142

seq1  CCCATTGATCATGCAA----ACTTTATCTGCCTCAGTACAGGGGAACGCC  180
      || | |||  || |||     ||                           
seq2  CCTA-TGAGAATACAAGAAGCCTA--------------------------  165

seq1  AGGGCCAAGAAGTGGGAGTGGGAGAGTGGGGGAGTGGGTGGGGGACTTTT  230
                                                        
seq2  --------------------------------------------------  165

seq1  AGGATAGCATTGGAAATGTAAATAAAATAAATACCTAGTAAAAGAATAAA  280
                                                        
seq2  --------------------------------------------------  165

seq1  ATTGAAAAAAAAGTACTGGCTCATCTTGTACAGGACCTGGGTTTGGATCA  330
                                                        
seq2  --------------------------------------------------  165

seq1  TAGCACCCACAACTGTCCATAACACCAGTTCCAGGAAATCTGATGCCCTT  380
                                                        
seq2  --------------------------------------------------  165

seq1  TTCTGGTACCTGAGGGCAGAACCCATGATATAAACACAGAAATGCAGACA  430
                                                        
seq2  --------------------------------------------------  165

seq1  AAAATACTCATACACCTTTAAAAAGGCGGGGGGGGGGCGCGCCAGCAAAT  480
                                                        
seq2  --------------------------------------------------  165

seq1  ATCTTCTAAAAATTATAGAAGAAAACTTCCCAAACCTAAAGAAATAGATG  530
                                                        
seq2  --------------------------------------------------  165

seq1  TCCATGAGCATACAAGAAGCCTA  553
                             
seq2  -----------------------  165


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