BAC Information

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BAC

Clone NameB6Ng01-252G15
ChromosomeX (Build37)
Map Location 156,575,014 - 156,576,252
singlet/doubletsinglet
Overlap genePdha1
Upstream geneRps6ka3, Eif1ay, Mtap7d2, A830080D01Rik, LOC100041359, Sh3kbp1, LOC667524
Downstream geneLOC100041403, LOC100041416, LOC100041427, Gpr64, Phka2, Ppef1, Rs1, Gja6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252G15.bB6Ng01-252G15.g
ACCGA059416GA059417
length1,2111,197
definitionB6Ng01-252G15.b B6Ng01-252G15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggacacatactaagagctcaataaatgttggctatgtcgtaga
aatgtgctttgctgccggttcagattcaaatggtggttttccattccttg
atgcaattcctagagaaggacatttcgacctttctacaacctccccacac
tgagcagaattgcatcaaatcctaaagaaatcaacagaaccagaattaca
agtcaaagcctgatgacagttacaccaagagaaggcaacctctgtgtggc
tagaggtcaaaatgctaaaagcttaggtattagacagctcttaaagccgg
gccataagtcttaacctctaatcccaactctccgaaaaccattgctgttt
tctttcgctactttgaactctaagcctctgtgtgtttaagggtaaaggcg
gcttcctctgggttatgctcgattgctcgaaaattgactgccaagaaaaa
gttcagaggagcagggagtggaggaagtttgttttccgtgaacctgacct
ccctgaaccttcctcagaacagaacacaggtgatccacaaatgctcacgc
agctggacaccggcccttggcaggtgccaggcagaagggttggcattcgt
gccactgaccaactcaagataaccacccccccagaaggtagcgtcctcag
aatctccattatggagatgagagaactaggccctcagacgagtttttaca
tatcctgcttcttgatggttcctggtgccaaggctagtaaacgaagaagt
cggagtgcgcacggaacctgactcccgggactgggagctctttatttcgt
cttacgtggcctcatagccaagagcaatgacatgaaggagagtggaagtc
agcggagtccagagaggctggagcaagcccaagctccgcctcccagtgtc
ccgtaaggacgagcagttgtggggcgctgcaggggagctggcgtgaagct
tcgctgggggcgatcggggaagcacagcggaccgggcccgttctcaagcg
ctcttccccggtcagtgcgacacggactgcgcggaagccactccaagtcc
gcagctcgtcccagccccagccgtgcgcttcaagggggccggtccgcctc
tttctgccggctcagccgctcagctcacccgacttccgggatcaggcact
tactgcttctgtgcgaagactgcaacccgatacgtgcagacatcttcctc
agtgaagcgca
gaattctttgaatctgcaaatcaaaggcacacacatcagcatccttttga
aatgccttggctaactcatagactcctaaaccttttcctgaattcttttt
ttgtttgttttgttttgttttgttttgttttgttttgttttttgggacag
ggttgcttacatagctgggttggcttgttggctctctctcctgcagctct
cttctgtctcccactgcatccttgtgatcctccatctcctcctcactgtg
tcctagcccctgccactctaagggttccagctcgtctccctttgcccagc
cagtggactctggcatctttattgatcaatcaaaaaacaactggggacaa
atacctttagcttatggacacacagattcccaattgaattaaagcatttg
aactgatctccaacagcctatgactaagcatatccattcctgatgtacaa
ctagcaacaatgacttcttatgtctatcagaatctatataagaaagtgtt
ggtggcagaagtattcacaataacccaaagctagaaatgacatttatcta
cagtaagggataaatgaacattgtgatatgtgcaaaataaaatactatat
agcatttcagaaaaaaaattgaactaaccctacgtacaaacaagaatgga
tctaaccaatgatactgagaaaaagaagtcagttacaaaaaaatacatac
tacatgatacaattcatctgaagttcaggaataggaaaacaagtatttgt
cacagtttgtcttacagtttgtcttacagtaagtgtgaaggttactgaca
agggacatgagggagcgtcttagggtcatgaggacagttgttaagatctg
tggtgcattttgcgctgagaaagttatacctcacttgggaagttagtgaa
gtcaagaaatagaatcacatctcttcaatatttaagagattttttttcca
ttaaataaaggagaatattgtctgaggaaaatggaacttaactttcaaag
gcctttgtttttagtttacatcatcttctcaagtttagctgttgaacatt
tttgtttttgttttaagctttgtctcaaacctccatcccttcagattttg
taatacattcaagaatctaactagaatgggtgtgtgcagtcgtctggtgt
gcttatcaggtttaactgtttcatggagagattgaacctctcgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_156575014_156576252
seq2: B6Ng01-252G15.b_44_1254

seq1  GAATTCAGGACACATACTAAGAGCTCAATAAATGTTGGCTATGTCGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACACATACTAAGAGCTCAATAAATGTTGGCTATGTCGTAGA  50

seq1  AATGTGCTTTGCTGCCGGTTCAGATTCAAATGGTGGTTTTCCATTCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTTTGCTGCCGGTTCAGATTCAAATGGTGGTTTTCCATTCCTTG  100

seq1  ATGCAATTCCTAGAGAAGGACATTTCGACCTTTCTACAACCTCCCCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTCCTAGAGAAGGACATTTCGACCTTTCTACAACCTCCCCACAC  150

seq1  TGAGCAGAATTGCATCAAATCCTAAAGAAATCAACAGAACCAGAATTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGAATTGCATCAAATCCTAAAGAAATCAACAGAACCAGAATTACA  200

seq1  AGTCAAAGCCTGATGACAGTTACACCAAGAGAAGGCAACCTCTGTGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGCCTGATGACAGTTACACCAAGAGAAGGCAACCTCTGTGTGGC  250

seq1  TAGAGGTCAAAATGCTAAAAGCTTAGGTATTAGACAGCTCTTAAAGCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTCAAAATGCTAAAAGCTTAGGTATTAGACAGCTCTTAAAGCCGG  300

seq1  GCCATAAGTCTTAACCTCTAATCCCAACTCTCCGAAAACCATTGCTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAGTCTTAACCTCTAATCCCAACTCTCCGAAAACCATTGCTGTTT  350

seq1  TCTTTCGCTACTTTGAACTCTAAGCCTCTGTGTGTTTAAGGGTAAAGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCGCTACTTTGAACTCTAAGCCTCTGTGTGTTTAAGGGTAAAGGCG  400

seq1  GCTTCCTCTGGGTTATGCTCGATTGCTCGAAAATTGACTGCCAAGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCTGGGTTATGCTCGATTGCTCGAAAATTGACTGCCAAGAAAAA  450

seq1  GTTCAGAGGAGCAGGGAGTGGAGGAAGTTTGTTTTCCGTGAACCTGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGGAGCAGGGAGTGGAGGAAGTTTGTTTTCCGTGAACCTGACCT  500

seq1  CCCTGAACCTTCCTCAGAACAGAACACAGGTGATCCACAAATGCTCACGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACCTTCCTCAGAACAGAACACAGGTGATCCACAAATGCTCACGC  550

seq1  AGCTGGACACCGGCCCTTGGCAGGTGCCAGGCAGAAGGGTTGGCATTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACACCGGCCCTTGGCAGGTGCCAGGCAGAAGGGTTGGCATTCGT  600

seq1  GCCACTGACCAACTCAAGATAACCACCCCCCCAGAAGGTAGCGTCCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGACCAACTCAAGATAACCACCCCCCCAGAAGGTAGCGTCCTCAG  650

seq1  AATCTCCATTATGGAGATGAGAGAACTAGGCCCTCAGACGAGTTTTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCATTATGGAGATGAGAGAACTAGGCCCTCAGACGAGTTTTTACA  700

seq1  TATCCTGCTTCTTGATGGTTCCTGGTGCCAAGGCTAGTAAACGAAGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGCTTCTTGATGGTTCCTGGTGCCAAGGCTAGTAAACGAAGAAGT  750

seq1  CGGAGTGCGCACGGAACCTGACTCCCGGGACTGGGAGCTCTTTATTTCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTGCGCACGGAACCTGACTCCCGGGACTGGGAGCTCTTTATTTCGT  800

seq1  CTTACGTGGCCTCATAGCCAAGAGCAATGACATGAAGGAGAGTGGAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTGGCCTCATAGCCAAGAGCAATGACATGAAGGAGAGTGGAAGTC  850

seq1  AGCGGAGTCCAGAGAGGCTGGAGCAAGCCCAAGCTCCGCCTCCCAGTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAGTCCAGAGAGGCTGGAGCAAGCCCAAGCTCCGCCTCCCAGTGTC  900

seq1  CCGTAAGGGACGAGCAGTTGTGGGGCGCTGCAGGGGAGCTGGCGTGAAGC  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAA-GGACGAGCAGTTGTGGGGCGCTGCAGGGGAGCTGGCGTGAAGC  949

seq1  TCCGCTGGGGGCGATCGGGGGAAGCACAGCGGACCGGGCCCGTTCTCAAG  1000
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCGCTGGGGGCGATC-GGGGAAGCACAGCGGACCGGGCCCGTTCTCAAG  998

seq1  CCGCTCTTCCCCCGGCCAGTGGCGACACGGACTGCGCGGAAAGCCCACCC  1050
       ||||||| |||||| |||| |||||||||||||||||| |||||   ||
seq2  -CGCTCTT-CCCCGGTCAGT-GCGACACGGACTGCGCGG-AAGCCACTCC  1044

seq1  AAGTCCCGCAGCTCGTCCCCAGCCCCCAGCCGTGCGCTCCAGGGGGGCCC  1100
      |||| ||||||||||| ||||| ||||||||||||||| || ||||| ||
seq2  AAGT-CCGCAGCTCGT-CCCAG-CCCCAGCCGTGCGCTTCAAGGGGG-CC  1090

seq1  GGTCCGCCCTCTTCCTGCCCCGCCTCAGGCCGGCTCCAGCCCCACCCCGG  1150
      |||||| |||||| |||  ||| |||||  | ||| ||| | |||||  |
seq2  GGTCCG-CCTCTTTCTG--CCGGCTCAG--CCGCT-CAG-CTCACCC--G  1131

seq1  CCTCCCGGGATCAGGCGACCTCACCGGCTTCTGCGCAGAGCCTGCCAACA  1200
       || |||||||||||| || |   | ||||||| ||  || ||| |||| 
seq2  ACTTCCGGGATCAGGC-ACTT--ACTGCTTCTGTGCGAAGACTG-CAACC  1177

seq1  CGCGGGATACAGCGGCAAGCATCTTCCTCA-TGGAGCGCA  1239
      |    |||||    |||  ||||||||||| || ||||||
seq2  C----GATAC--GTGCAGACATCTTCCTCAGTGAAGCGCA  1211