BAC Information

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BAC

Clone NameB6Ng01-254N14
ChromosomeX (Build37)
Map Location 38,009,165 - 38,010,296
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636756, EG636766, EG245391, LOC100039769
Downstream geneLOC385344, Gria3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254N14.bB6Ng01-254N14.g
ACCGA061210GA061211
length1,1321,119
definitionB6Ng01-254N14.b B6Ng01-254N14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactcccaaaatgactttactatgcctggatgccattttgttga
tgtctgtgagggtctcttcttactcacacaaaaaatatctttatgatttt
aataaagtagaaacaacaaagacttcaatcaactgttattaactaaggta
cagtttattatcaatgatcacttaatctgttaacttcactcacagtatat
ctctcacttttgcctctcaacctccaaaacacacataagttttaataaaa
agcagtgtatctgttcatctgtttaatttccacacttaagagtgagcaaa
atgaggtcaagaattatgttttctaaagggagaggtggatcagtaatgcc
ccagttgtgctgagtgtaattagtactttattacatgtttaagagataat
tttaaacaatataaaggaccaaaacaagtgaagtgatatgaatcagaaaa
attttaatgagttcagctacatattttaaattctaatcctaaatctatca
cctttttatgttttattttaaaaatgggattaaagtcgttgttcactttt
ctaatactcaaatgagaacatatattttcatttccctaattatattgtaa
atgattgttatagatatcaagaagatagaatgcaccctggaaaatgaaat
ccaattattgatcatccactctcattattatgaactaggaggttagaagt
accattgtgaacttgaatagtctggaagatcttagtataaagggacatcg
atttcattattaagtaaattgggagcagttataattcaaaaaaaataaca
agatggggaaacttgagaagtgatgagaattaattatacttcaaaatcta
aaaatacttatctttgtttttatttaatgtttttaattttcattttttat
atcttgagggttttttatttaaaacacaaactttgatttcatcaaagact
aatactttgcttgcaatcaaatatgaacctattctttttattttttttta
aagattatctcataagaagaagcaacattgccctgctcttgcagtagttt
cttctagcttccatatggtactgtcctagttatggggtcaaataccattc
ttttcaaagcatgtaggtttgatggtagtcat

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatgtaagatcgagaattgacaaatgg
gacctaatgaaactccaaagtttctgcttctatttctttaggtgaaatgg
gactgtttagattgttaatctgatcctgatttaactttggtacctggtat
ctgtctaggaagttgtacatttcatccaggttttctagttttgttgagta
tagtcttttgtagtaggatctgatgatgttttgtatttcttcaggttctg
ttgttatgcctcctttttcatttctgattttcttaattaggatactttcc
ctgtgacctctagttagtctggctaaggatttatctatcttgttgatttt
ctcaaagaaccagctccttgtttggttgtttctttgaatagttctttttg
tttccacttggttgatttcagccttaagtttgattatttcctgccatata
ctcctcttgggtgaatttatttcctttcattctagggcttctaggtgtgc
tgtccgactgctagtgtatgctctctagtttctttttggagccacacaag
gctatgagttttcctattaggactgctttcattgtgtcccataaatttgg
gtatgttgtggcttcattttcattaaactctacaaagtatttaatttatt
tctttatttcatccttgactaaggaaccattgagtaaagtgttgttcagt
ttcgatgtgaatgttgaatttctattatttatgttgttattgaagatcag
ccttagtctgtggtgatcagataggatgcacgggataatttcaaaatttt
tgtaactgttgaggcctgtttgtgaccaatttatatggtcagttttggag
aggttaccatgttggtgatgaaagaagtatatccttttgctttaggtaaa
atgttcttgtagatatctattaaatccatttgtttcataccttctgttag
tgtccatgtgtcctctgtttagtttctgttccagatctctgcccattggt
ggaaatgggggtggtgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_38009165_38010296
seq2: B6Ng01-254N14.b_47_1178 (reverse)

seq1  ATGACTAAACATCCAAACTACATGCTTTGAAAAAGAATGGTATTTTGAAC  50
      |||||| | |||| || |||||||||||| |||||||||||| ||||| |
seq2  ATGACT-ACCATCAAACCTACATGCTTTG-AAAAGAATGGTA-TTTGACC  47

seq1  CCATTACTAGGACAGTAACATATGGAAAGCTAGAAGAAACTACTGCAGAA  100
      |||| |||||||||||| ||||||| |||||||||||||||||||||  |
seq2  CCATAACTAGGACAGTACCATATGG-AAGCTAGAAGAAACTACTGCAAGA  96

seq1  GCA-GGCAATG-TGCTTCTTCTTATGAGATAATCTTT-AAAAAAAATAAA  147
      ||| ||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  GCAGGGCAATGTTGCTTCTTCTTATGAGATAATCTTTAAAAAAAAATAAA  146

seq1  AAGAATA-GTTCATATTTGATTGCAAGCAAAGTATTAGTCCTTGATGAAA  196
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  AAGAATAGGTTCATATTTGATTGCAAGCAAAGTATTAGTCTTTGATGAAA  196

seq1  TCAAAGTTTGTGTTTTAAATAAAAAACCCTCAAGATATAAAAAATGAAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTTGTGTTTTAAATAAAAAACCCTCAAGATATAAAAAATGAAAA  246

seq1  TTAAAAACATTAAATAAAAACAAAGATAAGTATTTTTAGATTTTGAAGTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACATTAAATAAAAACAAAGATAAGTATTTTTAGATTTTGAAGTA  296

seq1  TAATTAATTCTCATCACTTCTCAAGTTTCCCCATCTTGTTATTTTTTTTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTCTCATCACTTCTCAAGTTTCCCCATCTTGTTATTTTTTTTG  346

seq1  AATTATAACTGCTCCCAATTTACTTAATAATGAAATCGATGTCCCTTTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAACTGCTCCCAATTTACTTAATAATGAAATCGATGTCCCTTTAT  396

seq1  ACTAAGATCTTCCAGACTATTCAAGTTCACAATGGTACTTCTAACCTCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGATCTTCCAGACTATTCAAGTTCACAATGGTACTTCTAACCTCCT  446

seq1  AGTTCATAATAATGAGAGTGGATGATCAATAATTGGATTTCATTTTCCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATAATAATGAGAGTGGATGATCAATAATTGGATTTCATTTTCCAG  496

seq1  GGTGCATTCTATCTTCTTGATATCTATAACAATCATTTACAATATAATTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATTCTATCTTCTTGATATCTATAACAATCATTTACAATATAATTA  546

seq1  GGGAAATGAAAATATATGTTCTCATTTGAGTATTAGAAAAGTGAACAACG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGAAAATATATGTTCTCATTTGAGTATTAGAAAAGTGAACAACG  596

seq1  ACTTTAATCCCATTTTTAAAATAAAACATAAAAAGGTGATAGATTTAGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATCCCATTTTTAAAATAAAACATAAAAAGGTGATAGATTTAGGA  646

seq1  TTAGAATTTAAAATATGTAGCTGAACTCATTAAAATTTTTCTGATTCATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTAAAATATGTAGCTGAACTCATTAAAATTTTTCTGATTCATA  696

seq1  TCACTTCACTTGTTTTGGTCCTTTATATTGTTTAAAATTATCTCTTAAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCACTTGTTTTGGTCCTTTATATTGTTTAAAATTATCTCTTAAAC  746

seq1  ATGTAATAAAGTACTAATTACACTCAGCACAACTGGGGCATTACTGATCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATAAAGTACTAATTACACTCAGCACAACTGGGGCATTACTGATCC  796

seq1  ACCTCTCCCTTTAGAAAACATAATTCTTGACCTCATTTTGCTCACTCTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCCTTTAGAAAACATAATTCTTGACCTCATTTTGCTCACTCTTA  846

seq1  AGTGTGGAAATTAAACAGATGAACAGATACACTGCTTTTTATTAAAACTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGAAATTAAACAGATGAACAGATACACTGCTTTTTATTAAAACTT  896

seq1  ATGTGTGTTTTGGAGGTTGAGAGGCAAAAGTGAGAGATATACTGTGAGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTTTGGAGGTTGAGAGGCAAAAGTGAGAGATATACTGTGAGTG  946

seq1  AAGTTAACAGATTAAGTGATCATTGATAATAAACTGTACCTTAGTTAATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAACAGATTAAGTGATCATTGATAATAAACTGTACCTTAGTTAATA  996

seq1  ACAGTTGATTGAAGTCTTTGTTGTTTCTACTTTATTAAAATCATAAAGAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGATTGAAGTCTTTGTTGTTTCTACTTTATTAAAATCATAAAGAT  1046

seq1  ATTTTTTGTGTGAGTAAGAAGAGACCCTCACAGACATCAACAAAATGGCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTGTGAGTAAGAAGAGACCCTCACAGACATCAACAAAATGGCA  1096

seq1  TCCAGGCATAGTAAAGTCATTTTGGGAGTTGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCATAGTAAAGTCATTTTGGGAGTTGAATTC  1132


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