BAC Information

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BAC

Clone NameB6Ng01-258D01
ChromosomeX (Build37)
Map Location 86,690,382 - 86,691,581
singlet/doubletsinglet
Overlap geneEG629419
Upstream geneLOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934, Pet2
Downstream gene4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258D01.bB6Ng01-258D01.g
ACCGA063691GA063692
length1,209547
definitionB6Ng01-258D01.b B6Ng01-258D01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttacttatttaggggtttttgagataatagtcttactctgaa
gtttaaactgtgccagaattcacagtgtcatccataccagcctcaatctt
aaggcaatatcttatctcagactcaatagtgctagcattacgggtatgac
agatgaaattgttgctattttaaattaacaaatacagtgaatatatatca
caagaaaatatggcttctggaagttcctaatgcaaactgtgattgtgtta
ggaatacagccaaagaatggaaattttgctcatggctcaatagacaggta
gattctgtctttcctgtgggctatcatggcacttaatgccttacacttta
atttttatatattagcattaagtgtttgttttaaatttcaaaacattgca
aaaacttgcaaaaatacttatatataggttaaaatgtcaatttggaaatg
tagtatttgaaacctaaatagtagtagtttaccacttaaagtaagaagaa
ttctctttgagttcctattcacaagaatgtgtagtctgtgtgaattatca
catacatactagttactttcttaattatagacaggacaattctactatgc
tatatacatattttattgagaaaagggtatgggtacatatttattttaga
tgaggatattgaagataaaaccagtaagagcttctgaaaagtatctaatt
tatgagtgtcaaagagagagagagccaatttattgttaaactgctttatt
tcagagctcataaatcatcagtttaaaaatgctagttttttatacattga
acactgactctgaattgagaatctccaacccaggcagctcacaactacct
gaaattccagctccagaccatctgatgctctctttctgtattccatggaa
acctgcactgacatatgcacatatatgcatgtacatatatacatacaact
aaagaaaaaatattattttggaaaagtcaaatcatttcagaatctaccat
tgtcagaaagctccacacaaaccatttcacttatcatatctcaatgatat
tgtgttctgagactaagccatgttcttttgccttaaaatgtcttttctgg
acagtattttattgaatatccaactagaataaatacaaaaattgagccag
taaaaatggaaaatgtgttatacctttataaaagccttttctctcacctc
tggttttat

tttgtttagctctgtaccccattttaatagggttatttgattttctagag
tccagtttcttgagctctttatatattggatattagtcctctatcggatt
taggattggtaaaaatccttccccaatctgttggtgacctttttgtctta
ttgacagtgtcttttgccttacagaagctttgcaattttatgatgaatgg
accctgatatagctgtctcttatgaggctatgtcagtgcctggcaaatac
agaagtggatgatcacagtcatctataggatggaacacaggacccccaat
ggagaagctagagaaaggacccaaggagctgaaggggtctacaaccctat
aagtggaacaacaatatgaactaaccagtacccccagagcttgtgtctct
agctgcatatgtagcagaagatggcctagtcagacatcattgggaagaaa
ggcctcttggtattgcaaactttatattccccagtacaggggaacgccag
ggccaagaaatgggagtgagtgggtagaggagcagggtgtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_86690382_86691581
seq2: B6Ng01-258D01.b_44_1252

seq1  GAATTCATTTACTTATTTAGGGGTTTTTGAGATAATAGTCTTACTCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACTTATTTAGGGGTTTTTGAGATAATAGTCTTACTCTGAA  50

seq1  GTTTAAACTGTGCCAGAATTCACAGTGTCATCCATACCAGCCTCAATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAACTGTGCCAGAATTCACAGTGTCATCCATACCAGCCTCAATCTT  100

seq1  AAGGCAATATCTTATCTCAGACTCAATAGTGCTAGCATTACGGGTATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATATCTTATCTCAGACTCAATAGTGCTAGCATTACGGGTATGAC  150

seq1  AGATGAAATTGTTGCTATTTTAAATTAACAAATACAGTGAATATATATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAATTGTTGCTATTTTAAATTAACAAATACAGTGAATATATATCA  200

seq1  CAAGAAAATATGGCTTCTGGAAGTTCCTAATGCAAACTGTGATTGTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATATGGCTTCTGGAAGTTCCTAATGCAAACTGTGATTGTGTTA  250

seq1  GGAATACAGCCAAAGAATGGAAATTTTGCTCATGGCTCAATAGACAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACAGCCAAAGAATGGAAATTTTGCTCATGGCTCAATAGACAGGTA  300

seq1  GATTCTGTCTTTCCTGTGGGCTATCATGGCACTTAATGCCTTACACTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTCTTTCCTGTGGGCTATCATGGCACTTAATGCCTTACACTTTA  350

seq1  ATTTTTATATATTAGCATTAAGTGTTTGTTTTAAATTTCAAAACATTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATATATTAGCATTAAGTGTTTGTTTTAAATTTCAAAACATTGCA  400

seq1  AAAACTTGCAAAAATACTTATATATAGGTTAAAATGTCAATTTGGAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGCAAAAATACTTATATATAGGTTAAAATGTCAATTTGGAAATG  450

seq1  TAGTATTTGAAACCTAAATAGTAGTAGTTTACCACTTAAAGTAAGAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTGAAACCTAAATAGTAGTAGTTTACCACTTAAAGTAAGAAGAA  500

seq1  TTCTCTTTGAGTTCCTATTCACAAGAATGTGTAGTCTGTGTGAATTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGAGTTCCTATTCACAAGAATGTGTAGTCTGTGTGAATTATCA  550

seq1  CATACATACTAGTTACTTTCTTAATTATAGACAGGACAATTCTACTATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACTAGTTACTTTCTTAATTATAGACAGGACAATTCTACTATGC  600

seq1  TATATACATATTTTATTGAGAAAAGGGTATGGGTACATATTTATTTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATATTTTATTGAGAAAAGGGTATGGGTACATATTTATTTTAGA  650

seq1  TGAGGATATTGAAGATAAAACCAGTAAGAGCTTCTGAAAAGTATCTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATATTGAAGATAAAACCAGTAAGAGCTTCTGAAAAGTATCTAATT  700

seq1  TATGAGTGTCAAAGAGAGAGAGAGCCAATTTATTGTTAAACTGCTTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTGTCAAAGAGAGAGAGAGCCAATTTATTGTTAAACTGCTTTATT  750

seq1  TCAGAGCTCATAAATCATCAGTTTAAAAATGCTAGTTTTTTATACATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCTCATAAATCATCAGTTTAAAAATGCTAGTTTTTTATACATTGA  800

seq1  ACACTGACTCTGAATTGAGAATCTCCAACCCAGGCAGCTCACAACTACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACTCTGAATTGAGAATCTCCAACCCAGGCAGCTCACAACTACCT  850

seq1  GAAATTCCAGCTCCAGACCATCTGATGCTCTCTTTCTGTATTCCATGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCCAGCTCCAGACCATCTGATGCTCTCTTTCTGTATTCCATGGAA  900

seq1  ACCTGCACTGACATATGCACATATATGCATGTACATATATACATACAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACTGACATATGCACATATATGCATGTACATATATACATACAACT  950

seq1  AAAGAAAAAATATTATTTTGGAAAAGTCAAATCATTTCAGAATCTACCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAATATTATTTTGGAAAAGTCAAATCATTTCAGAATCTACCAT  1000

seq1  TGTCAGAAAGCTCCACACAAACCATTTCACTTATCATATCTCAATGATA-  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTCAGAAAGCTCCACACAAACCATTTCACTTATCATATCTCAATGATAT  1050

seq1  TGTGTTCTGAGACTAAGCCATGTTCTTTTG-CTTAAAATGTCTTTTCTGG  1098
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGTTCTGAGACTAAGCCATGTTCTTTTGCCTTAAAATGTCTTTTCTGG  1100

seq1  ACAGTATTT--ATGAATATCAAATTAGGATAAATACAAAAA-TGAG-CAG  1144
      |||||||||   |||||||| || ||| ||||||||||||| |||| |||
seq2  ACAGTATTTTATTGAATATCCAACTAGAATAAATACAAAAATTGAGCCAG  1150

seq1  TAAAAATGAAAAATGTG-TATACCTTTATAAAAGCTCTTTCTC-CA-CTC  1191
      |||||||| |||||||| |||||||||||||||||  |||||| || |||
seq2  TAAAAATGGAAAATGTGTTATACCTTTATAAAAGCCTTTTCTCTCACCTC  1200

seq1  TGGTTTTAT  1200
      |||||||||
seq2  TGGTTTTAT  1209


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