BAC Information

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BAC

Clone NameB6Ng01-260C21
ChromosomeX (Build37)
Map Location 129,993,507 - 129,994,628
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665846, LOC665850, LOC665854
Downstream geneLOC100040794, Pcdh19, LOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260C21.bB6Ng01-260C21.g
ACCGA065165GA065166
length1,1901,124
definitionB6Ng01-260C21.b B6Ng01-260C21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttt
tcaaatgctttctccacatctaaggagacgatcatgtggtttttgtcttt
gagtttgtttatatactggattacattgatgtatttccgtatattgaacc
attcctgcatccctgggatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggatttggttagcaagaactttattgaggatttttgc
atcgatattcataagggaaattggtctgaagttctctttgttgggtcttt
ttgtggtttaggtatcagagtaatagtggcatcataaaatgagttgggta
gagtaccttctgtttcaattttgtggaataaaatatggggctcagagcta
aacaaagaattctcacctgaggaatactgaatggctgagaagcacctaaa
aaaattttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccc
tgagattccacctcacaccagtcagaatggctaagttcaaaaattcaggt
gacagcagatgctggcgaggatgtggagaaagaggaacagtcctccattg
ttggttggattgcacacttgtacaaccactctcgaaatcagtctgggggt
tcttcagaaaattggacatactactacgggaggatcccgccatacctctc
ctgggcatatatctagaagatgttccaactggtaagaaggacacatgctc
cactatgttcatagcagccttatttataatagccagaagctggaaaaaaa
ccagatgcccctcaacagaggaatggatacagaaaatgtgatatatttac
acaatggagtactacttatctattaaaaagaatgaatttatgaaattcct
aggcaaatggatggacttggagggcatcatcctgagtgagtagcccaatc
acaaaagaactcacacatatgtactcactgatagtggatattagccagaa
acttagataccaagatatagaatacattgggaaacccgtaaactcagaag
aatgaagaccaagtgtgacacttgaccttcttagaatggacaaacaccca
tgcagagtacagagacagtgaaccgtgaatgaagaatgaacttgaactgc
atccggatcatcaatcgactcaacctgaataacatggtca
gaattccttgtgaactcttgtatttctggaaaaggagacatttttctaga
gtatgtcatcttttggaggccacatttagaatcatgtttgggttccttag
tacaaaaatactccaatgcatctatagaataagcataacttcaaggcagt
catttatagaccagatatcttgggaaccttaattaaagaggactcttcta
acttgtacaaaaatatagtctaggccccatgcatctctatccaaggaatg
actatcaccagtttggggattaaataataggaaatagctaaagaccgtaa
tgcctcaaatgtacctgtgaaatggctaatgtgacaagtttttaatatga
acactgtcagacaatctgtaaaaacagaaccaaagtacaacaaaaatatg
aaatcacagtagtttcatttgttagtgaatctggaaataaaaatcatata
ctttaagttccatgccagtaacttgtggctagttcaatgtatttaccttt
gctactgaaagatggtgttgatcctgaaaacagacttaagaaaaattaat
tccatcctataacactataactcaaatgtctgatcaaagatctaaattga
gaagcccaagattatctttttcaccaataagttatcaaaatatcaatttt
tatttgatagtatacttttactatgtctaaaatatatgaagaactaatta
tgttgaattatatgaatacaaagtaactaggtagatgattgagatgtgta
ttaataggaaaatattttttcatacatagtacaacaatttggtgagtttt
gacgaaagggtagtcatataactaccctcaccattcaaagggtagaaaat
atctgttaattcacaaaatttcattatgctacattggaataagttcctga
ctttcatcatggactgccgcatgtaactcttgaacatctgtaataatttt
ttctagaattgtgcataaataaatcatacatacatatgcatatacacaca
ttattttattgagacaatgtctccactatttgtaacctaggctggcttca
agcttgctaacttttgcccacagcctcctaagtatggattacaggattag
ttccacagtgcaccgtcttcttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_129993507_129994628
seq2: B6Ng01-260C21.g_64_1187 (reverse)

seq1  ACAAGAAGACCGTGCACTGT-GACCTAATCTTGTAATTCCAATACTTAGG  49
      |||||||||| ||||||||| || |||||| ||||||  | |||||||||
seq2  ACAAGAAGACGGTGCACTGTGGAACTAATCCTGTAAT--CCATACTTAGG  48

seq1  AGGCTGTGGCAAAAAGTTAGCAAGCTTGAAGCCAGCCTAGGTTAC-AATA  98
      |||||||||  |||||||||||||||||||||||||||||||||| ||||
seq2  AGGCTGTGGGCAAAAGTTAGCAAGCTTGAAGCCAGCCTAGGTTACAAATA  98

seq1  GT-GAGACATTGTCTCAATAAA--TATGTGTGTATATGCATATGTATTGT  145
      || |||||||||||||||||||   ||||||||||||||||||||| |||
seq2  GTGGAGACATTGTCTCAATAAAATAATGTGTGTATATGCATATGTA-TGT  147

seq1  ATGATTTTATTTATGCACAATTCTAGAAAAAATTATTACAGATGTTCAAG  195
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGA-TTTATTTATGCACAATTCTAGAAAAAATTATTACAGATGTTCAAG  196

seq1  AGTTACATGCGGCAGTCCATGATGAAAGTCAGGAACTTATTCCAATGTAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATGCGGCAGTCCATGATGAAAGTCAGGAACTTATTCCAATGTAG  246

seq1  CATAATGAAATTTTGTGAATTAACAGATATTTTCTACCCTTTGAATGGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAAATTTTGTGAATTAACAGATATTTTCTACCCTTTGAATGGTG  296

seq1  AGGGTAGTTATATGACTACCC-TTCGTCAAAACTCACCAAATTGTTGTAC  344
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGGTAGTTATATGACTACCCTTTCGTCAAAACTCACCAAATTGTTGTAC  346

seq1  TATGTATGAAAAAATATTTTCCTATTAATACACATCTCAATCATCTACCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGAAAAAATATTTTCCTATTAATACACATCTCAATCATCTACCT  396

seq1  AGTTACTTTGTATTCATATAATTCAACATAATTAGTTCTTCATATATTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTGTATTCATATAATTCAACATAATTAGTTCTTCATATATTTT  446

seq1  AGACATAGTAAAAGTATACTATCAAATAAAAATTGATATTTTGATAACTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGTAAAAGTATACTATCAAATAAAAATTGATATTTTGATAACTT  496

seq1  ATTGGTGAAAAAGATAATCTTGGGCTTCTCAATTTAGATCTTTGATCAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGAAAAAGATAATCTTGGGCTTCTCAATTTAGATCTTTGATCAGA  546

seq1  CATTTGAGTTATAGTGTTATAGGATGGAATTAATTTTTCTTAAGTCTGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGTTATAGTGTTATAGGATGGAATTAATTTTTCTTAAGTCTGTT  596

seq1  TTCAGGATCAACACCATCTTTCAGTAGCAAAGGTAAATACATTGAACTAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATCAACACCATCTTTCAGTAGCAAAGGTAAATACATTGAACTAG  646

seq1  CCACAAGTTACTGGCATGGAACTTAAAGTATATGATTTTTATTTCCAGAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGTTACTGGCATGGAACTTAAAGTATATGATTTTTATTTCCAGAT  696

seq1  TCACTAACAAATGAAACTACTGTGATTTCATATTTTTGTTGTACTTTGGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAACAAATGAAACTACTGTGATTTCATATTTTTGTTGTACTTTGGT  746

seq1  TCTGTTTTTACAGATTGTCTGACAGTGTTCATATTAAAAACTTGTCACAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTACAGATTGTCTGACAGTGTTCATATTAAAAACTTGTCACAT  796

seq1  TAGCCATTTCACAGGTACATTTGAGGCATTACGGTCTTTAGCTATTTCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATTTCACAGGTACATTTGAGGCATTACGGTCTTTAGCTATTTCCT  846

seq1  ATTATTTAATCCCCAAACTGGTGATAGTCATTCCTTGGATAGAGATGCAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAATCCCCAAACTGGTGATAGTCATTCCTTGGATAGAGATGCAT  896

seq1  GGGGCCTAGACTATATTTTTGTACAAGTTAGAAGAGTCCTCTTTAATTAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTAGACTATATTTTTGTACAAGTTAGAAGAGTCCTCTTTAATTAA  946

seq1  GGTTCCCAAGATATCTGGTCTATAAATGACTGCCTTGAAGTTATGCTTAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAAGATATCTGGTCTATAAATGACTGCCTTGAAGTTATGCTTAT  996

seq1  TCTATAGATGCATTGGAGTATTTTTGTACTAAGGAACCCAAACATGATTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGATGCATTGGAGTATTTTTGTACTAAGGAACCCAAACATGATTC  1046

seq1  TAAATGTGGCCTCCAAAAGATGACATACTCTAGAAAAATGTCTCCTTTTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGGCCTCCAAAAGATGACATACTCTAGAAAAATGTCTCCTTTTC  1096

seq1  CAGAAATACAAGAGTTCACAAGGAATTC  1122
      ||||||||||||||||||||||||||||
seq2  CAGAAATACAAGAGTTCACAAGGAATTC  1124