BAC Information

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BAC

Clone NameB6Ng01-264P09
ChromosomeX (Build37)14 (Build37)
Map Location 96,090,022 - 96,090,11794,736,246 - 94,737,349
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAr, LOC100042324, Ophn1
Downstream geneYipf6, LOC100042932, Stard8, LOC436219, Efnb1, Pja1, LOC100042947, Pcna-ps1, EG620592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264P09.bB6Ng01-264P09.g
ACCGA068734GA068735
length2081,101
definitionB6Ng01-264P09.b B6Ng01-264P09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,090,022 - 96,090,117)(94,736,246 - 94,737,349)
sequence
gaattcaatggagaaagtggtgtaccaccactccctgacagggtctccag
tagcagaaatgaaatgttgatttagcaagttgactcaggaaagttggagg
ggagaatgtatactagctgcagaaaggataagaaatgtccagccattgag
atagtcagggcatatcaaaattagttggtgtgtgtgtgtgtgtgtgtgtg
tgtgtttg
gaattccaaggcagagaatgctgcacagagaaataaaccaaccaccacta
acaaactgctctgattgcctcacaatcaacaacaaagtcctggtaaattt
aaagtccttatccttcaacactcttaatatcgggctacagaatgttttga
gatacctgatgtgggaactgggaatggaacttgggatgtcaaaagaaaaa
cacatgctcttaaggactgttccctttctccagccccacaaaaaagcatt
ttctcctgtcaattcaagtgctcttgctgtcctgtgatcctttcctgcag
tattaacatcattggggcaagagatcatggagtggaatctcgtaatctat
gaatcaaaagaaacatttttccctacgttaatttgtccaggattgagtac
agccatggagatcactagaaaaaatgcagatcatcctctaaagaattcat
tagtactacctttgtcaattatccacagcatttgtcaaattccttctacc
agtgaaatattcctatctctaactgaaagtacaaactttaacaatatgat
tatgagagatgattttaaatgcatattaattactttgatattattttttt
ctcctcacttaagttaatctatgtaaaaacataatcatttacagattgca
aataaatatccccaggtaactttctttcatttgaatatgtcttatctttt
ctattttctaaccatataccacagaatgtacaattaattcatattttata
atatatatgaattaacatatcattggcatctaattagtacttttagactt
cattgagttttatttttttttaaatatgtgagggtgttttatctgaatac
gtatacatgtaccttgtacacacagcgtccttggaggccagcaggaagcg
gagaattccaagtaactggaggtgaagatacttgcaaattatcgtattgg
taacaagaacctggattgaccatagagaagccagtgttcttaacgactga
gcaatctccttaacccccgctaattatatttttattaaacaataaatata
aaatcacttagcagtatatagaaacattgaaacctgtgttatcagagcaa
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_96090022_96090117
seq2: B6Ng01-264P09.b_149_250 (reverse)

seq1  CAAACACACACACACACACACACACACACACACACACACACAGAGAGAGA  50
      |||||||||||||||||||||||||||||||  ||  |    || |    
seq2  CAAACACACACACACACACACACACACACACCAACTAATTTTGATATGCC  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAT---------AGCTAGT  91
        ||     |     |  |   || |      ||         |||||||
seq2  CTGA---CTATCTCAATGGCTGGACATTTCTTATCCTTTCTGCAGCTAGT  97

seq1  ATACA  96
      |||||
seq2  ATACA  102

seq1: chr14_94736246_94737349
seq2: B6Ng01-264P09.g_68_1168

seq1  GAATTCCAAGGCAGAGAATGCTGCACAGAGAAATAAACCAACCACCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGCAGAGAATGCTGCACAGAGAAATAAACCAACCACCACTA  50

seq1  ACAAACTGCTCTGATTGCCTCACAATCAACAACAAAGTCCTGGTAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGCTCTGATTGCCTCACAATCAACAACAAAGTCCTGGTAAATTT  100

seq1  AAAGTCCTTATCCTTCAACACTCTTAATATCGGGCTACAGAATGTTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCTTATCCTTCAACACTCTTAATATCGGGCTACAGAATGTTTTGA  150

seq1  GATACCTGATGTGGGAACTGGGAATGGAACTTGGGATGTCAAAAGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTGATGTGGGAACTGGGAATGGAACTTGGGATGTCAAAAGAAAAA  200

seq1  CACATGCTCTTAAGGACTGTTCCCTTTCTCCAGCCCCACAAAAAAGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTCTTAAGGACTGTTCCCTTTCTCCAGCCCCACAAAAAAGCATT  250

seq1  TTCTCCTGTCAATTCAAGTGCTCTTGCTGTCCTGTGATCCTTTCCTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGTCAATTCAAGTGCTCTTGCTGTCCTGTGATCCTTTCCTGCAG  300

seq1  TATTAACATCATTGGGGCAAGAGATCATGGAGTGGAATCTCGTAATCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACATCATTGGGGCAAGAGATCATGGAGTGGAATCTCGTAATCTAT  350

seq1  GAATCAAAAGAAACATTTTTCCCTACGTTAATTTGTCCAGGATTGAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAAAGAAACATTTTTCCCTACGTTAATTTGTCCAGGATTGAGTAC  400

seq1  AGCCATGGAGATCACTAGAAAAAATGCAGATCATCCTCTAAAGAATTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGGAGATCACTAGAAAAAATGCAGATCATCCTCTAAAGAATTCAT  450

seq1  TAGTACTACCTTTGTCAATTATCCACAGCATTTGTCAAATTCCTTCTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTACCTTTGTCAATTATCCACAGCATTTGTCAAATTCCTTCTACC  500

seq1  AGTGAAATATTCCTATCTCTAACTGAAAGTACAAACTTTAACAATATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATATTCCTATCTCTAACTGAAAGTACAAACTTTAACAATATGAT  550

seq1  TATGAGAGATGATTTTAAATGCATATTAATTACTTTGATATTATTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGATGATTTTAAATGCATATTAATTACTTTGATATTATTTTTTT  600

seq1  CTCCTCACTTAAGTTAATCTATGTAAAAACATAATCATTTACAGATTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACTTAAGTTAATCTATGTAAAAACATAATCATTTACAGATTGCA  650

seq1  AATAAATATCCCCAGGTAACTTTCTTTCATTTGAATATGTCTTATCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATCCCCAGGTAACTTTCTTTCATTTGAATATGTCTTATCTTTT  700

seq1  CTATTTTCTAACCATATACCACAGAATGTACAATTAATTCATATTTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCTAACCATATACCACAGAATGTACAATTAATTCATATTTTATA  750

seq1  ATATATATGAATTAACATATCATTGGCATCTAATTAGTACTTTTAGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGAATTAACATATCATTGGCATCTAATTAGTACTTTTAGACTT  800

seq1  CATTGAGTTTTA-TTTTTTTTAAATATGTGAGGGTGTTTTATCTGAATAC  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATTGAGTTTTATTTTTTTTTAAATATGTGAGGGTGTTTTATCTGAATAC  850

seq1  GTATACATGTACCTTGTACACACAGCGTCCTTGGAGGCCAGCAGGAAGCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATGTACCTTGTACACACAGCGTCCTTGGAGGCCAGCAGGAAGCG  900

seq1  GAGAATTCCAAGTAACTGGAGGTGAAGATACTTGCAAATTATCGTATTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCCAAGTAACTGGAGGTGAAGATACTTGCAAATTATCGTATTGG  950

seq1  TAACAAGAACCTGGATTGACCAATAGAGAAGCCAGTGTTCTTAACGACTG  999
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAACAAGAACCTGGATTGACC-ATAGAGAAGCCAGTGTTCTTAACGACTG  999

seq1  AGCAATCTCCTTAA-CCCCGCTAATTTATATTTTATTAAAACAAATAAAT  1048
      |||||||||||||| ||||||||| |||||||||  | |||| |||||||
seq2  AGCAATCTCCTTAACCCCCGCTAA-TTATATTTTTATTAAAC-AATAAAT  1047

seq1  ATAAAAATCACTAAGCAGTATATAGAAAACATGAAACCTGTGGTATCAGG  1098
      || ||||||||| |||||||||||||||   ||||||||||| ||||| |
seq2  AT-AAAATCACTTAGCAGTATATAGAAACATTGAAACCTGTGTTATCA-G  1095

seq1  AGCAAT  1104
      ||||||
seq2  AGCAAT  1101