BAC Information

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BAC

Clone NameB6Ng01-265G20
Chromosome16 (Build37)X (Build37)
Map Location 88,634,185 - 88,635,19342,642,414 - 42,643,221
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBach1, LOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik
Downstream gene2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265G20.bB6Ng01-265G20.g
ACCGA069084GA069085
length1,212980
definitionB6Ng01-265G20.b B6Ng01-265G20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,634,185 - 88,635,193)(42,642,414 - 42,643,221)
sequence
gaattcttctcaatttagaagtacagatggacaatatacacatgaaaggt
gttcagtcatttcagtcatagtcaaattcaaatcaaaacaactgtgagat
tccaattttaacctgtgtcaatggctaatactaaaataaaaacagcaaaa
atattgttgggaatgggaggttatggaaggaattttgtatatttttattg
cttcttttacactggactacaatggggtaagattcagccactttcagttc
tgcccaccttggtctcagacaagcattggagactggttctcaccagaata
ttttttttaaagggaaaatggtgttaggaggatcaacacccacaataacc
tacacaaaatagtacagtatccggcatgattttggagattaattggaaaa
tggagagatgtctctgtggttaggaacactggctgttctcccagaagact
tgggtttggttcctagcatccacagagagaatctcagtcatttaaacccc
caattgtgagctgcgatgtgagttgtgagaattgaacctgggtgctctga
aatagccacagcttcccctaatcacagaattatctctccagcccaatcca
atggacatatgtggctaactgcttcatgttcctgctgtcctgacttgtcc
acaatgatagattataacctggaaatgtgactcaaacgaatccactctgt
cttaagttgcttttgtcctggcattttcacacaacaatggaaaataagac
gaagacatcaaatgtacacagctctctctttaattagaaacaccacagat
ttactaaaattatcaaatggaagttatcaaaggacacacatgcacagctc
aagaatgtacacttactggcagctggaaaaaaaaaatattcttacttgcc
acaacgcatccaaacgacaacgtgaactagagattaggttctcctgaaat
tttctttcactactggtacaaagtaaatatttttgggggggaacactttt
acattttattgtacttagattacagaagaccactttatataagcataatt
tgtactagggagcaatattcctcccataaatctctaacaggtccatctgc
ctttggtgcctttcccaccatgtgttgccttagtattgacagtcgtgatg
tgatgccatagcaaggcatctgatgaaatccaaatcctatattcgaattg
ctttaactaaaa
gaattctttgtcaaattcattcccatatggataactaacacagaatgtgg
aatatatatgattggctctacatactcagattaacgaatatgatagactt
ctacttagatatggcctcttaaagagtgcacagtcttccaatatagtgaa
aagaggtgaaaaccaagtatttttgcttgtttttgacatatttatttatt
tatttatttacttacttacttacttacttacttacttacactccaggtat
tattcccctcccggtctaccctttgataattattttaacaagggacacta
tgagggacattttatatataaaaaataacaatatagtttaaaaaaccact
ttacaatagtcacaaataatgtaaaataccttggtgtgactctaaaaaca
aaagatctgtatgataagaacttcaagtctctgaagaaagaaaaggaaga
cgatctcagaagatggaaagatctcccatactcatcaattggcaggatca
atatagtaaaaatggctatcttgccgaaagcaatctacagattcaatgca
atccccatcaaaattccaactcaattcttcactgagttagaaagggcaat
ttgcaaattcatctggaatacaaaaaaacctaggatagcaaagaacctct
ggtggaatcaccatccctgaccaaaagctgaactacagagctattgtggt
aaaacctgcatggtactgatacagtgacagacaggtcaatggaatagaat
tgaagacccagaaatgaacccacacacctatggtcacttgatcttttaca
aaggagctaaaaccatccagtgaaaagaagacataattttcaataaatga
tgatggctcaactggcagatatcatatataagtaatgtgaattgatccat
tctccgctccttgtacaaagctcaagtctaagtggatcaaggaactccac
ataaaaccagagacactgaaatttatagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88634185_88635193
seq2: B6Ng01-265G20.b_242_1253

seq1  CTTCATTTACACTGGACTACAATGGGGTAAGATTCAGCCACTTTCAGTTC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTACACTGGACTACAATGGGGTAAGATTCAGCCACTTTCAGTTC  50

seq1  TGCCCACCTTGGTCTCAGAGAAGCATTGGAGACTGGTTCTCACCAGAATA  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGCCCACCTTGGTCTCAGACAAGCATTGGAGACTGGTTCTCACCAGAATA  100

seq1  TTTTTTTTAAAGGGAAAATGGTGTTAGGAGGATCAACACCCACAAGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTTTTTAAAGGGAAAATGGTGTTAGGAGGATCAACACCCACAATAACC  150

seq1  TACACAAAATAGTACAGTATCCGGCATGATTTTGGAGATTAATTGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAATAGTACAGTATCCGGCATGATTTTGGAGATTAATTGGAAAA  200

seq1  TGGAGAGATGTCTCTGTGGTTAGGAACACTGGCTGTTCTCCCAGAAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGTCTCTGTGGTTAGGAACACTGGCTGTTCTCCCAGAAGACT  250

seq1  TGGGTTTGGTTCCTAGCATCCACAGAGAGAATCTCAGTCATTTAAACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGGTTCCTAGCATCCACAGAGAGAATCTCAGTCATTTAAACCCC  300

seq1  CAATTGTGAGCTGCGATGTGAGTTGTGAGAATTGAACCTGGGTGCTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTGAGCTGCGATGTGAGTTGTGAGAATTGAACCTGGGTGCTCTGA  350

seq1  AATAGCCACAGCTTCCCCTAATCACAGAATTATCTCTCCAGCCCAATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCACAGCTTCCCCTAATCACAGAATTATCTCTCCAGCCCAATCCA  400

seq1  ATGGACATATGTGGCTAACTGCTTCATGTTCCTGCTGTCCTGACTTGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACATATGTGGCTAACTGCTTCATGTTCCTGCTGTCCTGACTTGTCC  450

seq1  ACAATGATAGATTATAACCTGGAAATGTGACTCAAACGAATCCACTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATAGATTATAACCTGGAAATGTGACTCAAACGAATCCACTCTGT  500

seq1  CTTAAGTTGCTTTTGTCCTGGCATTTTCACACAACAATGGAAAATAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTGCTTTTGTCCTGGCATTTTCACACAACAATGGAAAATAAGAC  550

seq1  GAAGACATCAAATGTACACAGCTCTCTCTTTAATTAGAAACACCACAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATCAAATGTACACAGCTCTCTCTTTAATTAGAAACACCACAGAT  600

seq1  TTACTAAAATTATCAAATGGAAGTTATCAAAGGACACACATGCACAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAATTATCAAATGGAAGTTATCAAAGGACACACATGCACAGCTC  650

seq1  AAGAATGTACACTTACTGGCAGCTGG-AAAAAAAAATATTCTTACATGCC  699
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  AAGAATGTACACTTACTGGCAGCTGGAAAAAAAAAATATTCTTACTTGCC  700

seq1  AGAAGGCATGCAAACGACAACGTGAACTAGAGATTAGGTTCTCCTGAAAT  749
      | || |||| ||||||||||||||||||||||||||||||||||||||| 
seq2  ACAACGCATCCAAACGACAACGTGAACTAGAGATTAGGTTCTCCTGAAA-  749

seq1  TTTTCTTTCACTACTGGTACAAAGTAAAATATTTTTGGGGGGGAACACTT  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTCTTTCACTACTGGTACAAAGT-AAATATTTTTGGGGGGGAACACTT  798

seq1  TTACATTTTATTGTAC-TAGATTACAGAAGACCACTTTAATATAAGCATA  848
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  TTACATTTTATTGTACTTAGATTACAGAAGACCACTTT-ATATAAGCATA  847

seq1  AATTGTACTA-GGAGC-ATATTCTTCCCATAAATCTC--ACA-GTCCATC  893
      | |||||||| ||||| |||||| |||||||||||||  ||| |||||||
seq2  ATTTGTACTAGGGAGCAATATTCCTCCCATAAATCTCTAACAGGTCCATC  897

seq1  TG-CTTTGTGCCCTTCCCCACCATGTG-TGCCCTAGTATTTGACAGTTCG  941
      || |||||   |||| ||||||||||| |||| ||||| ||||||| |||
seq2  TGCCTTTGGTGCCTTTCCCACCATGTGTTGCCTTAGTA-TTGACAG-TCG  945

seq1  TGATGTGATG-CATAGCAAGGCATTCTAGTATGAATCCCAAATCCTATA-  989
      |||||||||| |||||||||||| |||   |||||  |||||||||||| 
seq2  TGATGTGATGCCATAGCAAGGCA-TCT--GATGAAATCCAAATCCTATAT  992

seq1  TCGATTTTGCTTAACTAAAA  1009
      |||| ||   ||||||||||
seq2  TCGAATTGCTTTAACTAAAA  1012

seq1: chrX_42642414_42643221
seq2: B6Ng01-265G20.g_64_870

seq1  GAATTCATTTGTAAAATTCATTCCCATATGGATAACTAACACAGAATGTG  50
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTC-TTTGTCAAATTCATTCCCATATGGATAACTAACACAGAATGTG  49

seq1  GAATATATATGATTGGCTCTACATACTCAGATTAACGAATATGATAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATATGATTGGCTCTACATACTCAGATTAACGAATATGATAGACT  99

seq1  TCTACTTAGATATGGCCTCTTAAAGAGTGCACAGTCTTCCAATATAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTAGATATGGCCTCTTAAAGAGTGCACAGTCTTCCAATATAGTGA  149

seq1  AAAGAGGTGAAAACCAAGTATTTTTGCTTGTTTTTGACATATTTATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTGAAAACCAAGTATTTTTGCTTGTTTTTGACATATTTATTTAT  199

seq1  TTATTTATTTACTTACTTACTTACTTACTTACTTACTTACACTCCAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTACTTACTTACTTACTTACTTACTTACTTACACTCCAGGTA  249

seq1  TTATTCCCCTCCCGGTCTACCCTTTGATAATTATTTTAACAAGGGACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCCCTCCCGGTCTACCCTTTGATAATTATTTTAACAAGGGACACT  299

seq1  ATGAGGGACATTTTATATATAAAAAATAACAATATAGTTTAAAAAACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGACATTTTATATATAAAAAATAACAATATAGTTTAAAAAACCAC  349

seq1  TTTACAATAGTCACAAATAATGTAAAATACCTTGGTGTGACTCTAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATAGTCACAAATAATGTAAAATACCTTGGTGTGACTCTAAAAAC  399

seq1  AAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAAAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAAAGGAAG  449

seq1  ACGATCTCAGAAGATGGAAAGATCTCCCATACTCATCAATTGGCAGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATCTCAGAAGATGGAAAGATCTCCCATACTCATCAATTGGCAGGATC  499

seq1  AATATAGTAAAAATGGCTATCTTGCCGAAAGCAATCTACAGATTCAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTAAAAATGGCTATCTTGCCGAAAGCAATCTACAGATTCAATGC  549

seq1  AATCCCCATCAAAATTCCAACTCAATTCTTCACTGAGTTAGAAAGGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCATCAAAATTCCAACTCAATTCTTCACTGAGTTAGAAAGGGCAA  599

seq1  TTTGCAAATTCATCTGGAATACAAAAAAACCTAGGATAGCAAAGAACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATTCATCTGGAATACAAAAAAACCTAGGATAGCAAAGAACCTC  649

seq1  TGGTGGAATCACCATCCCTGACCAAAAGCTGAACTACAGAGCTATTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAATCACCATCCCTGACCAAAAGCTGAACTACAGAGCTATTGTGG  699

seq1  TAAAACCTGCATGGTACTGATACAGTGACAGACAGGTCAATGGAATAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTGCATGGTACTGATACAGTGACAGACAGGTCAATGGAATAGAA  749

seq1  TTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTTTAC  799

seq1  AAAGGAGC  808
      ||||||||
seq2  AAAGGAGC  807