BAC Information

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BAC

Clone NameB6Ng01-271D09
ChromosomeX (Build37)
Map Location 27,451,729 - 27,452,886
singlet/doubletsinglet
Overlap geneEG664890
Upstream geneLOC100042154, EG664861, LOC664866, LOC100042175, LOC100039194, LOC100039208, EG664877, LOC664881, LOC100039240, LOC100039248, LOC100039073
Downstream geneLOC664898, LOC22526, EG664906, LOC664917, LOC100039324, LOC100039334, LOC100039096, EG664923, LOC100039364, LOC100039377, LOC100039386, LOC100039127, EG664944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271D09.bB6Ng01-271D09.g
ACCGA073357GA073358
length9021,152
definitionB6Ng01-271D09.b B6Ng01-271D09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcctttccaatttttatccctttgacctctttttgttatatag
ttgctatggatataacttctagtactataaaattctactatattatatac
tactgtgaataggtaggaagagagtggtcttgtcttgtctgatattagtg
ggattgcatcaagtttctctccatttaatttgatgttggatactggtttg
ctctatattgcttttactatgtttaggtatgggccttgacttgatctttc
caagaattttatcatgaagagttattgaatttttgcaaatgatttctcag
catctaatgagataatactgtttttttttcctcaagattttttacatagt
ggattacgctgatggattcccatatattgaaccatccctgtatccctggg
atgaagaacacttgatcatgaaggatgatcatattaacatgttcttggat
taggtttaccagaattttattgagtatttttgcatcaatattcataagtg
aaactggtctcaagttccctttcttcatttgggtctttgtatgttttggg
tataagtgtaattgtggcttcatagaaaattgaatagtgttccttctctt
ttgattttgcataaaagtttgaagagtattggtattaggtcttccttgaa
ggtctgatagaattctgtactaaacccatctgatcctgggcttttatttt
ttgtgagggggttgggagcctattagtgactgcttctatttctttagggg
ttataggagtgtttacagggtctatttgatcctgatttaaatttggtacc
tgatatctgtctagacagttgtccattttcatccaaatttttcagttttt
gttaagtataggctcttatagtaggatctgatgatttttggggggggggc
ct
gaattctaggttcattgagaccctgtctcccaaacagtgggatgcaacca
aagaagacacccaatattaatcctttgtctccatatgtatgcacgtgtac
attttttaaagagaaacttcacaaagtggaggtcattgtacttaatcagg
atgatttgagtggaaatgtgaggtacaaaactgatcactgtgaataaagg
acaaaataggaatgtagtagcagaaggagaaaaggtgtaaacagcctgtc
ttaattttttaaatgcaaattaccatggttgtctgccaacataaagaata
caaagagaaatttatattactacttccattgttacttgagattggaacct
agataaaacaaatctaccactagattggacttagtaaagaataagtataa
ggcatccttaagaaaggaaaagaaagtagaagacatggcacatacacctt
aggtgggggctagatacagagatgaggtagtgaaccacctcctgggatta
cttctgctggttagaaaaaggaggccaccatatggtaaaagcattaacac
tagctagagttaagcttccagggctaggattttaccaagttcatgtttac
atggtgcatgcctataaacttaagtacttgagaggctaaggccagtctct
gcagcatggcaaacactttctcataaaaaaaagttttattaacccacaat
tggtagtataattgtatttcatgttacttaaaaatataagtatatttagt
cataatagttgttaaaatgttaaatcacttggaaaactattccttttaca
tttcatatggaattatttttgctcacgtaaatattttagtattggaaata
cattaagtggttggttgttagcctagcattcatgctgcatggcagtaaaa
acaaaaatgaacagaattgttacagtaatgttttccttttacatttgtag
aacaattatcaaaaaagacaacagcattaaaactgtccgaatgtagtcag
atctgaccctggaagcaatttgaagaacatgcatgagaagtcatgagtat
gtttgcacatgttcataaaatgttccttagaaccgaaattatgttttaga
ttcaaaaggtttactactggaattttgactactcttactggagtggactg
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_27451729_27452886
seq2: B6Ng01-271D09.g_64_1215

seq1  GAATTCTAGGTTCATTGAGACCCTGTCTCCCAAACAGTGGGATGCAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTTCATTGAGACCCTGTCTCCCAAACAGTGGGATGCAACCA  50

seq1  AAGAAGACACCCAATATTAATCCTTTGTCTCCATATGTATGCACGTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGACACCCAATATTAATCCTTTGTCTCCATATGTATGCACGTGTAC  100

seq1  ATTTTTTAAAGAGAAACTTCACAAAGTGGAGGTCATTGTACTTAATCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAGAGAAACTTCACAAAGTGGAGGTCATTGTACTTAATCAGG  150

seq1  ATGATTTGAGTGGAAATGTGAGGTACAAAACTGATCACTGTGAATAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGAGTGGAAATGTGAGGTACAAAACTGATCACTGTGAATAAAGG  200

seq1  ACAAAATAGGAATGTAGTAGCAGAAGGAGAAAAGGTGTAAACAGCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAGGAATGTAGTAGCAGAAGGAGAAAAGGTGTAAACAGCCTGTC  250

seq1  TTAATTTTTTAAATGCAAATTACCATGGTTGTCTGCCAACATAAAGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTAAATGCAAATTACCATGGTTGTCTGCCAACATAAAGAATA  300

seq1  CAAAGAGAAATTTATATTACTACTTCCATTGTTACTTGAGATTGGAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAAATTTATATTACTACTTCCATTGTTACTTGAGATTGGAACCT  350

seq1  AGATAAAACAAATCTACCACTAGATTGGACTTAGTAAAGAATAAGTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAACAAATCTACCACTAGATTGGACTTAGTAAAGAATAAGTATAA  400

seq1  GGCATCCTTAAGAAAGGAAAAGAAAGTAGAAGACATGGCACATACACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCTTAAGAAAGGAAAAGAAAGTAGAAGACATGGCACATACACCTT  450

seq1  AGGTGGGGGCTAGATACAGAGATGAGGTAGTGAACCACCTCCTGGGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGGCTAGATACAGAGATGAGGTAGTGAACCACCTCCTGGGATTA  500

seq1  CTTCTGCTGGTTAGAAAAAGGAGGCCACCATATGGTAAAAGCATTAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTGGTTAGAAAAAGGAGGCCACCATATGGTAAAAGCATTAACAC  550

seq1  TAGCTAGAGTTAAGCTTCCAGGGCTAGGATTTTACCAAGTTCATGTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGAGTTAAGCTTCCAGGGCTAGGATTTTACCAAGTTCATGTTTAC  600

seq1  ATGGTGCATGCCTATAAACTTAAGTACTTGAGAGGCTAAGGCCAGTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCATGCCTATAAACTTAAGTACTTGAGAGGCTAAGGCCAGTCTCT  650

seq1  GCAGCATGGCAAACACTTTCTCATAAAAAAAAGTTTTATTAACCCACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATGGCAAACACTTTCTCATAAAAAAAAGTTTTATTAACCCACAAT  700

seq1  TGGTAGTATAATTGTATTTCATGTTACTTAAAAATATAAGTATATTTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTATAATTGTATTTCATGTTACTTAAAAATATAAGTATATTTAGT  750

seq1  CATAATAGTTGTTAAAATGTTAAATCACTTGGAAAACTATTCCTTTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGTTGTTAAAATGTTAAATCACTTGGAAAACTATTCCTTTTACA  800

seq1  TTTCATATGGAATTATTTTTGCTCACGTAAATATTTTAGTATTGGAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATGGAATTATTTTTGCTCACGTAAATATTTTAGTATTGGAAATA  850

seq1  CATTAAGTGGTTGGTTGTTAGCCTAGCATTCATGCTGCATGGCAGTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTGGTTGGTTGTTAGCCTAGCATTCATGCTGCATGGCAGTAAAA  900

seq1  ACAAAAATGAACAGAATTGTTACAGTAATGTTTTCCTTTTACATTTGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATGAACAGAATTGTTACAGTAATGTTTTCCTTTTACATTTGTAG  950

seq1  AACAATTATCAAAAAGAACAACAAGCATTAAAACTGTCCGAATGTAGTCA  1000
      |||||||||||||||  ||||| |||||||||||||||||||||||||||
seq2  AACAATTATCAAAAAAGACAAC-AGCATTAAAACTGTCCGAATGTAGTCA  999

seq1  GAATCTGACCCTGGAAGCAA-TTGAAG-ACATGCATGAGAAGTCCATGGA  1048
      | |||||||||||||||||| |||||| ||||||||||||||| ||||  
seq2  G-ATCTGACCCTGGAAGCAATTTGAAGAACATGCATGAGAAGT-CATG--  1045

seq1  GGTATG-TTGCACATGGTCCATAAAATG-TCCTTAGGAAACGAAA-TATG  1095
       ||||| |||||||| || ||||||||| |||||| ||| ||||| ||||
seq2  AGTATGTTTGCACAT-GTTCATAAAATGTTCCTTA-GAACCGAAATTATG  1093

seq1  TTTTAGGAATCAAAAAGTTTAACTACTTGATATTTTGAATTATTTCTTAC  1145
      ||||| || |||||| |||| |||||| || ||||||| |    ||||||
seq2  TTTTA-GATTCAAAAGGTTT-ACTACTGGA-ATTTTGACT--ACTCTTAC  1138

seq1  TGAAGT-GACTGAT  1158
      || ||| |||||||
seq2  TGGAGTGGACTGAT  1152