BAC Information

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BAC

Clone NameB6Ng01-271M11
ChromosomeX (Build37)
Map Location 43,252,192 - 43,253,266
singlet/doubletsinglet
Overlap genenone
Upstream gene1110059M19Rik, LOC100040038, EG385346
Downstream geneLOC100040075, Actrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271M11.bB6Ng01-271M11.g
ACCGA073771GA073772
length1,2061,066
definitionB6Ng01-271M11.b B6Ng01-271M11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataaactggacccagcattattgcttcatacacaccttactgtc
aaagacaattactacctgagagtaaagagctggaaaacaattttccaagc
aaaaagtcccaagaagcaaccaggaatagccattctaaaatcgaataaaa
ttgactttcaactaaaagttataaaaaaaaagataaggaaggacacttat
actcatcaaaggaaaaaatcaccaagaagaactctaaattctgaacatct
atgctcaaaatgcaagagcatccagatccataaaagaaactttactaaag
ctgaaagcacacatttcacctcacacaataattgtgggggacttctaaac
cccactctcatcaatggacagatcagggaaacataaactaaacatgttta
tgacacagtgaaactaacagaatttggaaacgaatggatttttaaaatat
ctattgaacatttaatcctaaatcgaatgattatactttcttctcagcac
atcatggtaccttctccaaaattgaccacataatcagtcacaaattagca
ctcaacagatataagaatattgaaataaccccatgtctcctaaggatcac
taaggattaaggctggtcttcaatggcaacagaaagcccacatccacatg
gaagctgagcaatgctctcctctataacttgatcaaagaagaaataaaga
aagagattaaagactttttagagtttaatgaaaatgaagccacagcatac
agaaatttatggaacacaatgaaagcagtgctaagaggaaaactcatacc
tctgagagcctctaaaaaggaactagaaaaatcatacactaacaccttga
cagcacatctgaaagctctagaacaaaaagaagtagatacatccaagagg
agaagacagccggaaacaatcaaactcagggctgaaatcaaccatgtaga
aacaaaaagaactatacaaagaatcacaaaaccaggagctagatctttga
caaaatcacaagatagatacacccttagtcagactaccagagggcagaga
gacagtactcaaatacaaatagaacgaaacgagatattacatcgaaacta
gaatccaaaaaactatcgatctactacaaaactcctcactcaacaaactt
gaagcttgaatcaaggataatttctctagaacggattttcagggtagaca
aagtgg

gaattcaataatctcttattttctgcatcttgacccattgtgttttgtat
taatcaccaacaactgtaaaaagaggcttatctgatgttgcttgaaagat
tgattaatctgtaagtatgaatacaataattgagaggaagtttattatta
tatctacctagagaagcaacagtaatagggccccataggactttgaggcc
tttattcctagtatacagctttcaaagtgctagaagctgcaaagtatact
accaagagagaaaagtctttaacagtattatccaactatgaaagctacaa
tagctattaacctgaaagatatccccaatagtgaaatagtggcccaaata
acatggatgtaacctataaccctttttccatatttaacttgtgtattttt
ctgtgcttgtatgtctatatttatgtaatttgtaatttcacataaataag
actatatatattatattacctgacaacacacattgaaaaattaagtatga
acaacactattaatgttataaagttataatggtacatatattctcctcat
atcaatttagcaactggtattgaaattacttattcaaagcattattgtgt
caaaaatatatgtatatttaacaggtataagttaggtgaaatgaagaatt
ctaaaactgtaaacatacttaaaagttattaaaatctaagaaataaacat
acatcatacttatcaatcattagaaaaatcttatcgtgaaaatactccaa
ttactcaaagcaatctatcaaattatggtaatccttaccaaaagccttaa
tcaaatcctaatcagtagtttaaatcagtgattaagaactcaatattaaa
acactacactgcccaaacatgtaataaaagaataccatcaaatgaaagaa
tcctgccttgaaggaacttgtcttggttgatggtgaatgttattgttttg
aaaataggagttaaatgagtgacataaaatagagacaacacattgccaaa
ggacagtatttgaggaaatgacaggaaataacattgaaacagaaatgtaa
acatggagactatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_43252192_43253266
seq2: B6Ng01-271M11.g_65_1130

seq1  GAATTCAATAATCTCTTATTTTCTGCATCTTGACCCATTGTGTTTTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATCTCTTATTTTCTGCATCTTGACCCATTGTGTTTTGTAT  50

seq1  TAATCACCAACAACTGTAAAAAGAGGCTTATCTGATGTTGCTTGAAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACCAACAACTGTAAAAAGAGGCTTATCTGATGTTGCTTGAAAGAT  100

seq1  TGATTAATCTGTAAGTATGAATACAATAATTGAGAGGAAGTTTATTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATCTGTAAGTATGAATACAATAATTGAGAGGAAGTTTATTATTA  150

seq1  TATCTACCTAGAGAAGCAACAGTAATAGGGCCCCATAGGACTTTGAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACCTAGAGAAGCAACAGTAATAGGGCCCCATAGGACTTTGAGGCC  200

seq1  TTTATTCCTAGTATACAGCTTTCAAAGTGCTAGAAGCTGCAAAGTATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCTAGTATACAGCTTTCAAAGTGCTAGAAGCTGCAAAGTATACT  250

seq1  ACCAAGAGAGAAAAGTCTTTAACAGTATTATCCAACTATGAAAGCTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGAGAAAAGTCTTTAACAGTATTATCCAACTATGAAAGCTACAA  300

seq1  TAGCTATTAACCTGAAAGATATCCCCAATAGTGAAATAGTGGCCCAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATTAACCTGAAAGATATCCCCAATAGTGAAATAGTGGCCCAAATA  350

seq1  ACATGGATGTAACCTATAACCCTTTTTCCATATTTAACTTGTGTATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATGTAACCTATAACCCTTTTTCCATATTTAACTTGTGTATTTTT  400

seq1  CTGTGCTTGTATGTCTATATTTATGTAATTTGTAATTTCACATAAATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTGTATGTCTATATTTATGTAATTTGTAATTTCACATAAATAAG  450

seq1  ACTATATATATTATATTACCTGACAACACACATTGAAAAATTAAGTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATATATTATATTACCTGACAACACACATTGAAAAATTAAGTATGA  500

seq1  ACAACACTATTAATGTTATAAAGTTATAATGGTACATATATTCTCCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTATTAATGTTATAAAGTTATAATGGTACATATATTCTCCTCAT  550

seq1  ATCAATTTAGCAACTGGTATTGAAATTACTTATTCAAAGCATTATTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTAGCAACTGGTATTGAAATTACTTATTCAAAGCATTATTGTGT  600

seq1  CAAAAATATATGTATATTTAACAGGTATAAGTTAGGTGAAATGAAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATATATGTATATTTAACAGGTATAAGTTAGGTGAAATGAAGAATT  650

seq1  CTAAAACTGTAAACATACTTAAAAGTTATTAAAATCTAAGAAATAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTGTAAACATACTTAAAAGTTATTAAAATCTAAGAAATAAACAT  700

seq1  ACATCATACTTATCAATCATTAGAAAAATCTTATCGTGAAAATACTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATACTTATCAATCATTAGAAAAATCTTATCGTGAAAATACTCCAA  750

seq1  TTACTCAAAGCAATCTATCAAATTATGGTAATCCTTACCAAAAGCCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAAGCAATCTATCAAATTATGGTAATCCTTACCAAAAGCCTTAA  800

seq1  TCAAATCCTAATCAGTAGTTTAAATCAGTGATTAAGAACTCAATATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCTAATCAGTAGTTTAAATCAGTGATTAAGAACTCAATATTAAA  850

seq1  ACACTACACTGCCCAAACATGTAATAAAAGAATACCATCAAATGAAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACACTGCCCAAACATGTAATAAAAGAATACCATCAAATGAAAGAA  900

seq1  TCCTGCCTTGAAGGAACTTGTCTTGGTTGATGGTGAATGTTATTGTTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTTGAAGGAACTTGTCTTGGTTGATGGTGAATGTTATTGTTTTG  950

seq1  AAAAATAGGAGTTAAATGAGTGACAATAAAATAGAGACAAACAACATTGC  1000
       ||||||||||||||||||||||| |||||||||||||||   |||||||
seq2  -AAAATAGGAGTTAAATGAGTGAC-ATAAAATAGAGACAA--CACATTGC  996

seq1  CAAAGAACAAGGTATTTGAAGAAATGACAGGAAATAACATTGAAACAGAA  1050
      ||||| |||  |||||||| ||||||||||||||||||||||||||||||
seq2  CAAAGGACA--GTATTTGAGGAAATGACAGGAAATAACATTGAAACAGAA  1044

seq1  ATGTTAAAACAATGAGACTAATGTG  1075
      ||||  |||||  |||||| |||||
seq2  ATGT--AAACATGGAGACT-ATGTG  1066


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