MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-272K05
Chromosome	X (Build37)
Map Location	98,923,330 - 99,059,195
singlet/doublet	doublet
Overlap gene	Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083
Upstream gene	Gdpd2, Dlg3, Tex11, LOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291
Downstream gene	Rgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Gdpd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71584 MGI:1918834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dlg3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53310 MGI:1888986
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tex11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83558 MGI:1933237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668271 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668271
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 ESTs, 3 Proteins pseudo : _no_value

name	LOC100042392 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042392
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Slc7a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11989 MGI:1100521
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snx12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:55988 MGI:1919331
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mllt7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54601 MGI:1891915
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm614 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245536 MGI:2685460
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il2rg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16186 MGI:96551
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Med12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59024 MGI:1926212
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nlgn3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245537 MGI:2444609
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042407 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042407
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Gjb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14618 MGI:95719
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zmym3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56364 MGI:1927231
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nono (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53610 MGI:1855692
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Itgb1bp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26549 MGI:1353420
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC620837 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620837
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins pseudo : _no_value

name	Taf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270627 MGI:1336878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ogt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108155 MGI:1339639
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC620865 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620865
definition	note : RNA binding protein pseudogene pseudo : _no_value

name	LOC668291 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668291
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Cxcr3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12766 MGI:1277207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC632454 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:632454
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 1509 ESTs, 7 Proteins pseudo : _no_value

name	LOC668302 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668302
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 9 Proteins pseudo : _no_value

name	EG212753 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212753 MGI:3646776
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	8030474K03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382231 MGI:2685988
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs

name	LOC668308 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668308
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 9 Proteins pseudo : _no_value

name	LOC100042465 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042465
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	H3f3a-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15079 MGI:1101782
definition	note : H3 histone, family 3A, pseudogene 1 pseudo : _no_value

name	EG621083 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621083 MGI:3645090
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Rgag4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:331474 MGI:3045324
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042480 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042480
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs

name	LOC331476 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:331476
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins

name	Pin4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69713 MGI:1916963
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC670921 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670921
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein pseudo : _no_value

name	Ercc6l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236930 MGI:2654144
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668318 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668318
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 4 Proteins pseudo : _no_value

name	Rps4x (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20102 MGI:98158
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043080 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043080
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 3 Proteins pseudo : _no_value

name	Cited1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12705 MGI:108023
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hdac8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70315 MGI:1917565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phka1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18679 MGI:97576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC668331 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668331
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins pseudo : _no_value

name	LOC100042516 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042516
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG668339 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668339 MGI:3645559
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs

name	Dmrtc1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:632708 MGI:3639121
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668343 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668343 MGI:3648181
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 309 ESTs, 6 Proteins pseudo : _no_value

name	LOC100043105 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043105
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	EG668349 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668349 MGI:3648179
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	EG382233 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382233 MGI:3648097
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Dmrtc1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71083 MGI:1918333
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 2 Proteins

name	EG668360 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668360 MGI:3648387
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	LOC668357 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668357
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 2 Proteins

name	1700031F05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73300 MGI:1920550
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Gdpd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980660 GeneID:71584 MGI:1918834
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycerophosphodiester phosphodiesterase domain containing 2 transcript_id : NM_023608.2

name	Dlg3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131177 GeneID:53310 MGI:1888986
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : discs, large homolog 3 (Drosophila) transcript_id : NM_016747.2

name	Tex11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13878210 GeneID:83558 MGI:1933237
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : testis expressed gene 11 transcript_id : NM_031384.1

name	Slc7a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131076 GeneID:11989 MGI:1100521
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 transcript_id : NM_007515.2

name	Snx12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9256639 GeneID:55988 MGI:1919331
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorting nexin 12 transcript_id : NM_018875.1

name	Mllt7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9055157 GeneID:54601 MGI:1891915
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myeloid/lymphoid or mixed lineage-leukemia translocation to 7 homolog (Drosophila) transcript_id : NM_018789.1

name	Gm614 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370864 GeneID:245536 MGI:2685460
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 614, (NCBI) transcript_id : NM_001033362.2

name	Il2rg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129799 GeneID:16186 MGI:96551
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 2 receptor, gamma chain transcript_id : NM_013563.3

name	Med12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125628661 GeneID:59024 MGI:1926212
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mediator of RNA polymerase II transcription, subunit 12 homolog (yeast) transcript_id : NM_021521.2

name	Nlgn3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384121 GeneID:245537 MGI:2444609
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuroligin 3 transcript_id : NM_172932.2

name	LOC100042407 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271799 GeneID:100042407
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical protein LOC100042407 transcript_id : XM_001478124.1

name	Gjb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22165405 GeneID:14618 MGI:95719
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gap junction membrane channel protein beta 1 transcript_id : NM_008124.2

name	Zmym3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130614 GeneID:56364 MGI:1927231
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, MYM-type 3 transcript_id : NM_019831.2

name	Nono (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12963530 GeneID:53610 MGI:1855692
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : non-POU-domain-containing, octamer binding protein transcript_id : NM_023144.1

name	Itgb1bp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114842407 GeneID:26549 MGI:1353420
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrin beta 1 binding protein 2 transcript_id : NM_013712.2

name	Taf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486595 GeneID:270627 MGI:1336878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor transcript_id : NM_001081008.1

name	Ogt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46909606 GeneID:108155 MGI:1339639
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) transcript_id : NM_139144.2

name	Cxcr3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129823 GeneID:12766 MGI:1277207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-X-C motif) receptor 3 transcript_id : NM_009910.2

name	EG212753 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407689 GeneID:212753 MGI:3646776
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : predicted gene, EG212753 transcript_id : XM_136015.7

name	8030474K03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271836 GeneID:382231 MGI:2685988
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs product : RIKEN cDNA 8030474K03 gene transcript_id : XM_001000772.2

name	LOC100042465 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271805 GeneID:100042465
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042465 transcript_id : XM_001478268.1

name	EG621083 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407693 GeneID:621083 MGI:3645090
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : predicted gene, EG621083 transcript_id : XM_896183.2

name	Rgag4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387815 GeneID:331474 MGI:3045324
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retrotransposon gag domain containing 4 transcript_id : NM_183318.2

name	LOC100042480 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271807 GeneID:100042480
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs product : similar to novel similar to human Nance-Horan syndrome protein (RP11-262D11.5) transcript_id : XM_001478287.1

name	LOC331476 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271809 GeneID:331476
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : similar to SUMO-1-specific protease transcript_id : XM_001478302.1

name	Pin4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113931155 GeneID:69713 MGI:1916963
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) transcript_id : NM_027181.1

name	Ercc6l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27414500 GeneID:236930 MGI:2654144
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : excision repair cross-complementing rodent repair deficiency complementation group 6 - like transcript_id : NM_146235.2

name	Rps4x (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6677804 GeneID:20102 MGI:98158
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S4, X-linked transcript_id : NM_009094.1

name	Cited1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476051 GeneID:12705 MGI:108023
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 transcript_id : NM_007709.3

name	Hdac8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801693 GeneID:70315 MGI:1917565
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histone deacetylase 8 transcript_id : NM_027382.2

name	Phka1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142355008 GeneID:18679 MGI:97576
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphorylase kinase alpha 1 transcript_id : NM_173021.2

name	Phka1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679300 GeneID:18679 MGI:97576
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphorylase kinase alpha 1 transcript_id : NM_008832.1

name	LOC100042516 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271813 GeneID:100042516
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042516 transcript_id : XM_001478363.1

name	EG668339 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407698 GeneID:668339 MGI:3645559
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs product : predicted gene, EG668339 transcript_id : XM_001001002.1

name	Dmrtc1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84993762 GeneID:632708 MGI:3639121
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DMRT-like family C1b transcript_id : NM_001039116.1

name	LOC100043105 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271839 GeneID:100043105
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : similar to novel member of the doublesex and mab-3 related transcription factor (Dmrt) family transcript_id : XM_001479377.1

name	EG668349 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407703 GeneID:668349 MGI:3648179
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG668349 transcript_id : XM_001001046.1

name	EG382233 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407705 GeneID:382233 MGI:3648097
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : predicted gene, EG382233, transcript variant 1 transcript_id : XM_356344.5

name	Dmrtc1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407710 GeneID:71083 MGI:1918333
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 2 Proteins product : DMRT-like family C1c transcript_id : XM_001001109.1

name	EG668360 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271815 GeneID:668360 MGI:3648387
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG668360 transcript_id : XM_001001097.2

name	LOC668357 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94407706 GeneID:668357
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 2 Proteins product : similar to Dmrtc1c protein transcript_id : XM_135517.4

name	1700031F05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407712 GeneID:73300 MGI:1920550
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700031F05 gene, transcript variant 1 transcript_id : XM_356346.4

name	Gdpd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963749 CCDS:CCDS30306.1 GeneID:71584 MGI:1918834
definition	codon_start : 1 note : osteoblast differentiation promoting factor; glycerophosphodiester phosphodiesterase 3 product : osteoblast differentiation promoting factor protein protein_id : NP_076097.1

name	Dlg3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7949129 CCDS:CCDS30307.1 GeneID:53310 MGI:1888986
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 note : discs large homolog 3 product : synapse-associated protein 102 protein_id : NP_058027.1

name	Tex11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13878211 CCDS:CCDS30308.1 GeneID:83558 MGI:1933237
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : testis expressed gene 11 protein_id : NP_113561.1

name	Slc7a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671600 CCDS:CCDS30309.1 GeneID:11989 MGI:1100521
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS] GO_function : GO:0015171 - amino acid transporter activity [Evidence IEA]; GO:0015326 - cationic amino acid transporter activity [Evidence IDA]; GO:0015181 - L-arginine transporter activity [Evidence IDA]; GO:0015189 - L-lysine transporter activity [Evidence IDA] GO_process : GO:0015809 - arginine transport [Evidence IDA]; GO:0015819 - lysine transport [Evidence IDA] codon_start : 1 note : amino acid transporter, cationic 3 product : solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 protein_id : NP_031541.1

name	Snx12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9256640 GeneID:55988 MGI:1919331
definition	GO_function : GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : sorting nexin 12 protein_id : NP_061363.1

name	Mllt7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055158 GeneID:54601 MGI:1891915
definition	GO_component : GO:0005829 - cytosol [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0019899 - enzyme binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence ISS] [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence ISS]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0007050 - cell cycle arrest [Evidence ISS]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0000080 - G1 phase of mitotic cell cycle [Evidence ISS]; GO:0008286 - insulin receptor signaling pathway [Evidence ISS]; GO:0007095 - mitotic G2 checkpoint [Evidence IDA]; GO:0016525 - negative regulation of angiogenesis [Evidence ISS]; GO:0008285 - negative regulation of cell proliferation [Evidence ISS] [Evidence IDA]; GO:0051151 - negative regulation of smooth muscle cell differentiation [Evidence ISS]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence ISS] [Evidence IEA]; GO:0007519 - striated muscle development [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006366 - transcription from RNA polymerase II promoter [Evidence ISS] codon_start : 1 note : forkhead protein product : myeloid/lymphoid or mixed lineage-leukemia translocation to 7 homolog protein_id : NP_061259.1

name	Gm614 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701852 CCDS:CCDS30311.1 GeneID:245536 MGI:2685460
definition	codon_start : 1 note : interleukin 2 receptor, gamma chain product : hypothetical protein LOC245536 protein_id : NP_001028534.1

name	Il2rg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305181 CCDS:CCDS30312.1 GeneID:16186 MGI:96551
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004896 - hematopoietin/interferon-class (D200-domain) cytokine receptor activity [Evidence IEA]; GO:0019976 - interleukin-2 binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : gamma C receptor; common gamma chain; common cytokine receptor gamma chain product : interleukin 2 receptor, gamma chain protein_id : NP_038591.1

name	Med12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125628662 GeneID:59024 MGI:1926212
definition	GO_component : GO:0000119 - mediator complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0003713 - transcription coactivator activity [Evidence ISS] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence ISS] codon_start : 1 note : OPA-containing protein 1; trinucleotide repeat containing 11 (THR-associated protein, 230 kDa subunit); trinucleotide repeat containing 11 (THR-associated protein) product : mediator of RNA polymerase II transcription, subunit 12 homolog protein_id : NP_067496.2

name	Nlgn3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370440 CCDS:CCDS30313.1 GeneID:245537 MGI:2444609
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0045202 - synapse [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0050808 - synapse organization and biogenesis [Evidence ISS] codon_start : 1 exception : mismatches in translation note : neuroligin 3 protein product : neuroligin 3 protein_id : NP_766520.1

name	LOC100042407 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271800 GeneID:100042407
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478174.1

name	Gjb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22165406 CCDS:CCDS30314.1 GeneID:14618 MGI:95719
definition	GO_component : GO:0005922 - connexon complex [Evidence IEA]; GO:0005921 - gap junction [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0015285 - connexon channel activity [Evidence IEA]; GO:0005243 - gap-junction forming channel activity [Evidence IEA] GO_process : GO:0007154 - cell communication [Evidence IEA]; GO:0007267 - cell-cell signaling [Evidence IEA] codon_start : 1 note : connexin 32; connexin-32; connexin-43 product : gap junction protein, beta 1, 32kDa protein_id : NP_032150.2

name	Zmym3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790027 CCDS:CCDS30315.1 GeneID:56364 MGI:1927231
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : DXHXS6673E product : zinc finger protein 261 protein_id : NP_062805.1

name	Nono (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963531 CCDS:CCDS30316.1 GeneID:53610 MGI:1855692
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : non-POU-domain-containing, octamer-binding protein product : non-POU-domain-containing, octamer binding protein protein_id : NP_075633.1

name	Itgb1bp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305191 GeneID:26549 MGI:1353420
definition	GO_component : GO:0030018 - Z disc [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IDA] codon_start : 1 note : melusin product : integrin beta 1 binding protein 2 protein_id : NP_038740.1

name	Taf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486596 GeneID:270627 MGI:1336878
definition	GO_component : GO:0005669 - transcription factor TFIID complex [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006352 - transcription initiation [Evidence IEA] codon_start : 1 note : cell cycle, G1 phase defect product : TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_id : NP_001074477.1

name	Ogt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46909607 CCDS:CCDS30318.1 GeneID:108155 MGI:1339639
definition	GO_component : GO:0005829 - cytosol [Evidence ISS]; GO:0005622 - intracellular [Evidence TAS]; GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0008375 - acetylglucosaminyltransferase activity [Evidence ISS]; GO:0008080 - N-acetyltransferase activity [Evidence TAS]; GO:0005515 - protein binding [Evidence ISS]; GO:0016262 - protein N-acetylglucosaminyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006493 - protein amino acid O-linked glycosylation [Evidence TAS] [Evidence ISS]; GO:0007584 - response to nutrient [Evidence ISS]; GO:0007165 - signal transduction [Evidence ISS] codon_start : 1 note : UDP-N-acetylglucosaminyltransferase; O-linked GlcNAc transferase product : O-linked N-acetylglucosamine transferase protein_id : NP_631883.2

name	Cxcr3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753458 CCDS:CCDS30319.1 GeneID:12766 MGI:1277207
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016493 - C-C chemokine receptor activity [Evidence IEA]; GO:0016494 - C-X-C chemokine receptor activity [Evidence IEA]; GO:0004950 - chemokine receptor activity [Evidence IEA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006952 - defense response [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : chemokine (C-X-C) receptor 3 product : chemokine (C-X-C motif) receptor 3 protein_id : NP_034040.1

name	EG212753 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407690 GeneID:212753 MGI:3646776
definition	codon_start : 1 product : hypothetical protein protein_id : XP_136015.7

name	8030474K03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407692 GeneID:382231 MGI:2685988
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001000772.1

name	LOC100042465 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271806 GeneID:100042465
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478318.1

name	EG621083 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83003083 GeneID:621083 MGI:3645090
definition	codon_start : 1 product : similar to novel similar to human Nance-Horan syndrome protein (RP11-262D11.5) protein_id : XP_901276.1

name	Rgag4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34304005 CCDS:CCDS30320.1 GeneID:331474 MGI:3045324
definition	codon_start : 1 note : gag-like protein product : retrotransposon gag domain containing 4 protein_id : NP_899141.1

name	LOC100042480 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271808 GeneID:100042480
definition	codon_start : 1 product : similar to novel similar to human Nance-Horan syndrome protein (RP11-262D11.5) protein_id : XP_001478337.1

name	LOC331476 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271810 GeneID:331476
definition	codon_start : 1 product : similar to SUMO-1-specific protease protein_id : XP_001478352.1

name	Pin4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113931156 GeneID:69713 MGI:1916963
definition	GO_function : GO:0016853 - isomerase activity [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) protein_id : NP_081457.1

name	Ercc6l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27414501 CCDS:CCDS30321.1 GeneID:236930 MGI:2654144
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA] codon_start : 1 note : SNF2/RAD54 family protein; excision repair cross-complementing rodent repair deficiency complementation group 6-like product : excision repair cross-complementing rodent repair deficiency complementation group 6 - like protein_id : NP_666347.2

name	Rps4x (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677805 GeneID:20102 MGI:98158
definition	GO_component : GO:0005830 - cytosolic ribosome (sensu Eukaryota) [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence ISS] GO_function : GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence ISS]; GO:0007046 - ribosome biogenesis [Evidence IEA] codon_start : 1 note : ribosomal protein S4 X-linked product : ribosomal protein S4, X-linked protein_id : NP_033120.1

name	Cited1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671760 CCDS:CCDS30322.1 GeneID:12705 MGI:108023
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003700 - transcription factor activity [Evidence NAS]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0001892 - embryonic placenta development [Evidence IMP]; GO:0030318 - melanocyte differentiation [Evidence IMP]; GO:0043473 - pigmentation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0001570 - vasculogenesis [Evidence IMP] codon_start : 1 product : Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 protein_id : NP_031735.1

name	Hdac8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037203 GeneID:70315 MGI:1917565
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0000118 - histone deacetylase complex [Evidence TAS]; GO:0005634 - nucleus [Evidence TAS] [Evidence IEA] GO_function : GO:0004407 - histone deacetylase activity [Evidence IEA] [Evidence TAS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence TAS] GO_process : GO:0016568 - chromatin modification [Evidence TAS] [Evidence IEA]; GO:0016575 - histone deacetylation [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : histone deacetylase 8 protein_id : NP_081658.1

name	Phka1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27819665 CCDS:CCDS30324.1 GeneID:18679 MGI:97576
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005516 - calmodulin binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004689 - phosphorylase kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0005977 - glycogen metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2 product : phosphorylase kinase alpha 1 isoform 2 protein_id : NP_766609.1

name	Phka1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679301 CCDS:CCDS30323.1 GeneID:18679 MGI:97576
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005516 - calmodulin binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004689 - phosphorylase kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0005977 - glycogen metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1 product : phosphorylase kinase alpha 1 isoform 1 protein_id : NP_032858.1

name	LOC100042516 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271814 GeneID:100042516
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478413.1

name	EG668339 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407699 GeneID:668339 MGI:3645559
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001001002.1

name	Dmrtc1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84993763 CCDS:CCDS30325.1 GeneID:632708 MGI:3639121
definition	codon_start : 1 exception : mismatches in translation note : doublesex and mab-3 related transcription factor 8.2 product : DMRT-like family C1b protein_id : NP_001034205.1

name	LOC100043105 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271840 GeneID:100043105
definition	codon_start : 1 product : similar to novel member of the doublesex and mab-3 related transcription factor (Dmrt) family protein_id : XP_001479427.1

name	EG668349 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407704 GeneID:668349 MGI:3648179
definition	codon_start : 1 product : similar to doublesex and mab-3 related transcription factor 8.2 protein_id : XP_001001046.1

name	EG382233 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63747891 GeneID:382233 MGI:3648097
definition	codon_start : 1 product : similar to novel member of the doublesex and mab-3 related transcription factor (Dmrt) family isoform 1 protein_id : XP_356344.2

name	Dmrtc1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271841 GeneID:71083 MGI:1918333
definition	codon_start : 1 product : DMRT-like family C1c protein_id : XP_001001109.2

name	EG668360 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271816 GeneID:668360 MGI:3648387
definition	codon_start : 1 product : similar to doublesex and mab-3 related transcription factor 8.2 protein_id : XP_001001097.2

name	LOC668357 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271842 GeneID:668357
definition	codon_start : 1 product : similar to Dmrtc1c protein protein_id : XP_135517.4

name	1700031F05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38086482 GeneID:73300 MGI:1920550
definition	codon_start : 1 product : hypothetical protein LOC73300 isoform 1 protein_id : XP_356346.1

name	LOC100042392 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042392
definition	number : 2 pseudo : _no_value

name	LOC100042392 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042392
definition	number : 1 pseudo : _no_value

name	LOC668291 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668291
definition	number : 2 pseudo : _no_value

name	LOC668291 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668291
definition	number : 1 pseudo : _no_value

name	LOC668271 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271798 GeneID:668271
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 ESTs, 3 Proteins product : similar to high-mobility group box 1 pseudo : _no_value transcript_id : XR_033538.1

name	LOC620837 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271835 GeneID:620837
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : similar to Rnf26 protein pseudo : _no_value transcript_id : XR_034095.1

name	LOC632454 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271802 GeneID:632454
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 1509 ESTs, 7 Proteins product : similar to tumor protein, translationally-controlled 1 pseudo : _no_value transcript_id : XR_033588.1

name	LOC668302 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271803 GeneID:668302
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 9 Proteins product : similar to hCG1984468 pseudo : _no_value transcript_id : XR_033602.1

name	LOC668308 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271804 GeneID:668308
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 9 Proteins product : similar to hCG1984468 pseudo : _no_value transcript_id : XR_033611.1

name	LOC670921 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271837 GeneID:670921
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : similar to Hmgb1 protein pseudo : _no_value transcript_id : XR_034127.1

name	LOC668318 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271811 GeneID:668318
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 4 Proteins product : similar to PNG protein pseudo : _no_value transcript_id : XR_033639.1

name	LOC100043080 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271838 GeneID:100043080
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 3 Proteins product : similar to 60S ribosomal protein L34 pseudo : _no_value transcript_id : XR_034133.1

name	LOC668331 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271812 GeneID:668331
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins product : similar to transcriptional adaptor 3-like pseudo : _no_value transcript_id : XR_033649.1

name	EG668343 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94407700 GeneID:668343 MGI:3648181
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 309 ESTs, 6 Proteins product : predicted gene, EG668343 pseudo : _no_value transcript_id : XR_002167.1

clone name	MSMg01-276H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437K04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-391O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-209E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476L23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-051J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161C14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-052A19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-123E10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-052A19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-123E10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-263L07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-529C20
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-183L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340E02
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-272K05.b	B6Ng01-272K05.g
ACC	GA074414	GA074415
length	543	1,092
definition	B6Ng01-272K05.b	B6Ng01-272K05.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(98,923,330 - 98,923,872)	(99,058,105 - 99,059,195)
sequence	tgtcatgtctttgagcaaagctaagtcatgtaattacttagaaaataagt attttcatcttagtttactgttctccttattcaagagttccagcagactc cctatctttgggagctattgagggttgtggattggatccaagattgtatt tgtatatttctgtggaaaccagagaaaatggccaccaattgaatggctta gatctgcatgaatgtcttatcttagagttctggcagtcctgagcctagga tgagtcgtcgagataacaatctcaatcttgaccttcctctctggagaatg aagttctctgtctttcccagctcctagttcctcgcacagcccctgcctgc atggcttcttcaaagacaaaacatcttttgtctctttcctttccttttat agattcctgtgacactaggctcacttggtggcagtggtggcggtggcaga tgcttccttctccttctcctgctccccctctcttctgctgctgccaccac agcacacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt	tcccaagccctcaggatctgaagggctccagcagctgcatgctatgtcca agtccctaccaccatcaagacaagatttacctccaccagggagagactgc tctaacttccagctcctggctcatctgaagaaaggagttaccagagtgtt cttccaagttcctatgactgagggttacattgcattcaagaggtagtaaa gggaaggaaataaaagtggggttcgagaaaggtcagtacatattggcagc ctctgcatggactagcatcccccactggaggaagtgtggctgcaaactgg agtcggggcacagcagagggagtcagaaggctggaaagaactggcaggag ctgagtgtgggtctggaaggatgaataaatgttctggagaacaagaggaa agagctatggaagctttccctgcccctgtgcccagtgctttccaagcagg acttgggtgtctgcagtaacactgctttctgcactatctccctgagagtt aagactccagagttaaaggcaactcttaagaattacgtatcagcaatatc tggcacagaggccagcacaggcttagtgtgacgatcggggtaggaattag tttttggagccaactctaaatcaccagattagagataaactgctttcttt tattaagggacaagaacatgaaaagggaaaatatctcagctatgcccaaa ctcagccattttaaagacagtgtcttgttatagagtccaggcctggtctg gaactcttgatcctcttgcttcagccttcccaagtgctaagattgcatgg taagtcaccaccacacgagactctaaactcccactttgaagctcatttca agagaacacagtcaagtttttaaaccattgtgaaggaagaaatgatagtg gcattttcccatccaggatctcaaagcagtgttttagtcacagtttaaca agtagccctgggtgttcatctagagtagagccacagacagaggaatggct gatgctccctcaaactgtagctggcactgggcatctgagggataagcagt ctacctaccacaaatgaactggtgcctgggatgaatgggcag
quality values	Open. Hide. 62 62 62 39 26 47 62 62 62 62 62 62 49 43 62 59 62 62 62 62 62 59 51 59 32 38 28 40 46 62 62 62 62 59 59 62 62 62 62 62 62 62 62 54 42 59 62 62 62 62 62 59 49 62 62 59 59 62 62 62 62 62 59 62 62 62 62 59 62 49 54 62 54 62 62 62 62 62 62 62 62 59 59 62 54 54 62 62 62 62 62 59 62 62 62 62 59 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 59 54 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 33 37 62 62 62 62 62 62 62 62 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 52 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 49 49 58 58 58 58 58 49 58 58 49 58 49 38 49 58 58 58 58 58 58 49 41 58 58 58 58 58 58 14 11	Open. Hide. 62 62 62 41 37 40 46 43 56 56 38 38 50 32 49 28 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 59 56 54 62 49 42 59 62 62 59 62 62 59 59 62 62 62 62 54 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 24 54 59 59 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 54 54 54 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 38 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 54 58 58 58 58 58 58 58 49 38 58 58 58 54 58 58 58 54 47 58 58 58 54 58 58 58 51 54 58 54 58 58 49 58 58 58 54 54 54 58 58 58 58 58 58 49 58 52 58 48 58 58 54 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 58 58 49 58 52 58 51 49 38 58 50 58 58 52 58 51 53 58 42 58 58 58 54 58 52 58 58 49 58 45 38 51 58 58 58 58 58 58 58 51 53 32 58 58 43 41 53 52 52 58 58 58 58 58 58 47 58 46 58 46 31 58 54 58 58 53 50 58 58 58 53 41 46 53 49 46 51 40 50 54 53 58 28 28 39 52 58 58 54 51 58 54 54 58 50 43 49 58 58 41 42 51 52 41 46 24 58 49 47 34 50 50 50 58 50 50 39 54 54 58 54 54 38 38 54 49 39 49 54 37 53 52 53 53 54 47 34 32 51 38 38 52 41 44 54 53 25 54 51 39 53 49 34 34 53 40 19 44 54 54 37 28 54 54 47 42 45 40 53 52 52 45 53 45 45 51 28 51 38 52 40 42 54 37 39 49 51 40 40 49 32 54 32 52 54 41 47 32 40 37 53 35 33 52 40 45 41 42 31 32 31 53 42 52 28 53 45 37 34 32 37 33 33 52 51 34 33 34 53 47 32 40 34 25 32 43 45 30 33 31 24 6 31 40 42 31 30 51 45 27 42 28 28 43 43 25 20 37 29 51 45 31 43 28 45 34 37 24 31 32 38 43 31 25 47 35 31 38 34 46 30 26 32 31 46 42 31 33 31 29 31 31 31 29 31 48 38 38 30 29 42 42 31 31 22 17 25 32 31 22 15 31 20 37 31 37 48 48 47 31 32 41 26 28 32 25 32 31 31 31 33 36 31 9 34 17 26 16 31 48 29 31 36 25 23 24 17 32 27 28 14 14 32 48 48 37 38 48 21 12 29 18 30 32 31 20 32 35 25 20 29 18 47 31 30 28 19 16 21 25 31 44 47 24 33 13 13 26 19 32 27 32 18 39 9 27 19 21 13 18 30 17 23 9 25 47 16 8 9 32 11 4 9 8 17 26 8 43 14 21 23 27 24 16 16 31 11 21 6 24 6 7 21 14 23 33 10 6 16 18 8 22 9 8 23 20 18 11 27 20 14 12 6 19 5 15 38 22 20 16 18 34 13 19 13 14 6 12 24 28 21 18 29 11 19 31 9 22 40 28 19 24 26 19 18 19 24 11 47 14 7 5 5 13 6 21 5 7 9 21 13 20 9 13 15 8 20 10 6 3 3 19 11 5 12 10 16 19 16 15 10 8 10 14 12 9 15 18 6 5 2 13 7 8 7 8 23 17 4 4 7

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_98923330_98923872
seq2: B6Ng01-272K05.b_60_602

seq1  TGTCATGTCTTTGAGCAAAGCTAAGTCATGTAATTACTTAGAAAATAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTCTTTGAGCAAAGCTAAGTCATGTAATTACTTAGAAAATAAGT  50

seq1  ATTTTCATCTTAGTTTACTGTTCTCCTTATTCAAGAGTTCCAGCAGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATCTTAGTTTACTGTTCTCCTTATTCAAGAGTTCCAGCAGACTC  100

seq1  CCTATCTTTGGGAGCTATTGAGGGTTGTGGATTGGATCCAAGATTGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTTTGGGAGCTATTGAGGGTTGTGGATTGGATCCAAGATTGTATT  150

seq1  TGTATATTTCTGTGGAAACCAGAGAAAATGGCCACCAATTGAATGGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTTCTGTGGAAACCAGAGAAAATGGCCACCAATTGAATGGCTTA  200

seq1  GATCTGCATGAATGTCTTATCTTAGAGTTCTGGCAGTCCTGAGCCTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCATGAATGTCTTATCTTAGAGTTCTGGCAGTCCTGAGCCTAGGA  250

seq1  TGAGTCGTCGAGATAACAATCTCAATCTTGACCTTCCTCTCTGGAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCGTCGAGATAACAATCTCAATCTTGACCTTCCTCTCTGGAGAATG  300

seq1  AAGTTCTCTGTCTTTCCCAGCTCCTAGTTCCTCGCACAGCCCCTGCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCTGTCTTTCCCAGCTCCTAGTTCCTCGCACAGCCCCTGCCTGC  350

seq1  ATGGCTTCTTCAAAGACAAAACATCTTTTGTCTCTTTCCTTTCCTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCTTCAAAGACAAAACATCTTTTGTCTCTTTCCTTTCCTTTTAT  400

seq1  AGATTCCTGTGACACTAGGCTCACTTGGTGGCAGTGGTGGCGGTGGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTGTGACACTAGGCTCACTTGGTGGCAGTGGTGGCGGTGGCAGA  450

seq1  TGCTTCCTTCTCCTTCTCCTGCTCCCCCTCTCTTCTGCTGCTGCCACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTTCTCCTTCTCCTGCTCCCCCTCTCTTCTGCTGCTGCCACCAC  500

seq1  AGCACACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  543

seq1: chrX_99058105_99059195
seq2: B6Ng01-272K05.g_74_1165 (reverse)

seq1  CTGCCCA-TCCTTCCAGGCA-CAG-TCATTTGGTGGTA-GTAGACTGGCT  46
      ||||||| || | ||||||| ||| |||||| |||||| ||||||||  |
seq2  CTGCCCATTCATCCCAGGCACCAGTTCATTT-GTGGTAGGTAGACTGCTT  49

seq1  ATCCCTCAGATGCCCAGGTGCCAGCTACAGTTTGAGGGAGGCATCAGCCA  96
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  ATCCCTCAGATGCCCA-GTGCCAGCTACAGTTTGAGGGA-GCATCAGCCA  97

seq1  TTCCTCTGTCTGTGGCTCTACTCTAGAATGAACAACCAGGGCTACTTGTT  146
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  TTCCTCTGTCTGTGGCTCTACTCTAG-ATGAACACCCAGGGCTACTTGTT  146

seq1  -AACTGTGACTAAAACACTGCTTTGAGATCCTGGATGGGAAAATGCCACT  195
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGACTAAAACACTGCTTTGAGATCCTGGATGGGAAAATGCCACT  196

seq1  ATCATTTCTTCCTTCACAATGGTTTAAAAACTTGACTGTGTTCTCTTGAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTTCCTTCACAATGGTTTAAAAACTTGACTGTGTTCTCTTGAA  246

seq1  ATGAGCTTCAAAGTGGGAGTTTAGAGTCTCGTGTGGTGGTGACTTACCAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTCAAAGTGGGAGTTTAGAGTCTCGTGTGGTGGTGACTTACCAT  296

seq1  GCAATCTTAGCACTTGGGAAGGCTGAAGCAAGAGGATCAAGAGTTCCAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTAGCACTTGGGAAGGCTGAAGCAAGAGGATCAAGAGTTCCAGA  346

seq1  CCAGGCCTGGACTCTATAACAAGACACTGTCTTTAAAATGGCTGAGTTTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTGGACTCTATAACAAGACACTGTCTTTAAAATGGCTGAGTTTG  396

seq1  GGCATAGCTGAGATATTTTCCCTTTTCATGTTCTTGTCCCTTAATAAAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGCTGAGATATTTTCCCTTTTCATGTTCTTGTCCCTTAATAAAAG  446

seq1  AAAGCAGTTTATCTCTAATCTGGTGATTTAGAGTTGGCTCCAAAAACTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTTTATCTCTAATCTGGTGATTTAGAGTTGGCTCCAAAAACTAA  496

seq1  TTCCTACCCCGATCGTCACACTAAGCCTGTGCTGGCCTCTGTGCCAGATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACCCCGATCGTCACACTAAGCCTGTGCTGGCCTCTGTGCCAGATA  546

seq1  TTGCTGATACGTAATTCTTAAGAGTTGCCTTTAACTCTGGAGTCTTAACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATACGTAATTCTTAAGAGTTGCCTTTAACTCTGGAGTCTTAACT  596

seq1  CTCAGGGAGATAGTGCAGAAAGCAGTGTTACTGCAGACACCCAAGTCCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAGATAGTGCAGAAAGCAGTGTTACTGCAGACACCCAAGTCCTG  646

seq1  CTTGGAAAGCACTGGGCACAGGGGCAGGGAAAGCTTCCATAGCTCTTTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAGCACTGGGCACAGGGGCAGGGAAAGCTTCCATAGCTCTTTCC  696

seq1  TCTTGTTCTCCAGAACATTTATTCATCCTTCCAGACCCACACTCAGCTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCTCCAGAACATTTATTCATCCTTCCAGACCCACACTCAGCTCC  746

seq1  TGCCAGTTCTTTCCAGCCTTCTGACTCCCTCTGCTGTGCCCCGACTCCAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTTCTTTCCAGCCTTCTGACTCCCTCTGCTGTGCCCCGACTCCAG  796

seq1  TTTGCAGCCACACTTCCTCCAGTGGGGGATGCTAGTCCATGCAGAGGCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGCCACACTTCCTCCAGTGGGGGATGCTAGTCCATGCAGAGGCTG  846

seq1  CCAATATGTACTGACCTTTCTCGAACCCCACTTTTATTTCCTTCCCTTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATGTACTGACCTTTCTCGAACCCCACTTTTATTTCCTTCCCTTTA  896

seq1  CTACCTCTTGAATGCAATGTAACCCTCAGTCATAGGAACTTGGAAGAACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCTTGAATGCAATGTAACCCTCAGTCATAGGAACTTGGAAGAACA  946

seq1  CTCTGGTAACTCCTTTCTTCAGATGAGCCAGGAGCTGGAAGTTAGAGCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTAACTCCTTTCTTCAGATGAGCCAGGAGCTGGAAGTTAGAGCAG  996

seq1  TCTCTCCCTGGTGGAGGTAAATCTTGTCTTGATGGTGGTAGGGACTTGGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTGGTGGAGGTAAATCTTGTCTTGATGGTGGTAGGGACTTGGA  1046

seq1  CATAGCATGCAGCTGCTGGAGCCCTTCAGATCCTGAGGGCTTGGGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCATGCAGCTGCTGGAGCCCTTCAGATCCTGAGGGCTTGGGA  1092

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Alignment Information