BAC Information

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BAC

Clone NameB6Ng01-274D16
ChromosomeX (Build37)10 (Build37)
Map Location 63,202,286 - 63,202,901129,880,866 - 129,881,991
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCtag2, LOC671840
Downstream geneSlitrk2, LOC666824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274D16.bB6Ng01-274D16.g
ACCGA075587GA075588
length9321,109
definitionB6Ng01-274D16.b B6Ng01-274D16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,202,286 - 63,202,901)(129,880,866 - 129,881,991)
sequence
gaattccacacccctaagccccttaccccataaaaacccctagctttcga
gctttgtggccgacatccgttatctcctgtgtgggatgcatgtcggtcag
gagctctgtcattaaactacctcgtgtaattacatcaagtcggtctatct
attcgtgattctttgggtgcctgccgaatggggaattgagtgggggtttc
cccactaggttctatcatttggaggccccagcgagatctgcgtgacaccc
aggaaccccgaaagaccccttggaggtacatttgtttgtgtgagtcttgc
atgttgtctgttgtctaagtgtggcaccgctgaatttgtgtcttggtttt
tcagttctgagattgtgggtttgagtcccaccttgtgtcttggtttttta
gttctgagattgtgggtttgagtcccaccttgtgtcttgttttttagttc
tgagattgtgggttcgagtcccacctgggttcccagttctggtattctgt
attctggcagctgccactgtgggccatgaggacctagtggctgcgggagg
gagatgtcctaagaccccgcaggctgcaacactggaagacgttccacagg
tggaagcagagtcactacccccccctcaccccccaatcaggaagggtgtc
aatgtggaatccgacccccaacaggaagtcgtgtttggctggttgtacaa
gtccaggcatggacgagtgtgcttagatatactagtgtctttttttctct
gttgctgtcttgtttttgtttgtggttttcatcatgggacatagctggtt
tcaggtctggttttggtccccaaggggttgactgattatcttgttttggt
tttaggcctgtctcaggttctgggggcctttcccatgggagagaggtcca
tttgggttgggtcgcagtgacagtgagacgtg

gaattctccgattatcttaatgtctttgaagagatcagcttgccttttta
cttgctaacttttcccctttcgttcatggtggctaacattttaaacgtga
cctcatctctgttcctcaggatacattagacagcagtttttttagtcctt
taaccagaactggattgtggttttgtgaaattttgctgtgccactacctc
aggatgacatcctgcattttcaggattttcagagtcattgctctggtctt
ccccttttccgtctttttcagaagttggacattccccttttcctgaagta
tcagtaactgttttcttgggtggagaatcggattggtcagcagcactgtc
tttctctgtgttttttggcttgggatcttcactgccaggctctggactcc
cttgtccacctcctccccaagcactctggatgccccatttttttcccact
gatttgctatttaagcaactagctcctgaggaaattttggagtccttaga
tttcttgtgtgtagaagtttgaccactggagcccgacgcaggtagagttg
tggttttctgggctttgcatcgctctggctgttctttcttaggtgacccc
aagatgaaattctcttatggtgtgtaatgtttctgggcaaatcgcaagag
ctatctcctctctcttctgtctctaattgtataaacaaagtactccggag
cactctgcttaatattgggaataatattctccactagagcctcgtgaaga
atgaattttaccagaggagatttaaaactctcggcatggcttttaagaat
tcacgtaattcttaaatagttgtgctgagaccatctggcttaaatggaat
tttgttcttataaaagcgaaaggtaactcgagtccttttgatatcggata
tctttgaagttgggtacttatgtccttgtacagatctctcgccacataga
agcttctcttgggtttagcatttccttcagtggactcgctgccctgctcc
tcgccctgcgctctgcgtgtcctggcacgggctggcgcagcgactcaact
tctctcgagttcttggctgctcggctccggctctaaatcgtaggcagtgc
agtccagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_63202286_63202901
seq2: B6Ng01-274D16.b_526_967

seq1  GTTCTGGTATTCTGTATTCTGGCAGCTGCCACTGTGGACCGTAAGGACCT  50
      ||||||||||||||||||||||||||||||||||||| || | |||||||
seq2  GTTCTGGTATTCTGTATTCTGGCAGCTGCCACTGTGGGCCATGAGGACCT  50

seq1  AGTGGCTGTGGGAGGACGAAGGTCTTAAGGGTGACCCTGGAGGAAGTGCC  100
      |||||||| ||||||  | | ||| |||    |||||           | 
seq2  AGTGGCTGCGGGAGGGAG-ATGTCCTAA----GACCC-----------CG  84

seq1  CAGGGTGAGGGACAGTCAAAATGGACTGACTGTCCTCTGGCAGAGTGAGG  150
      |||| ||     ||   | | ||||  |||  ||| | ||  ||   || 
seq2  CAGGCTG-----CA---ACACTGGA-AGACGTTCCACAGGTGGAAGCAGA  125

seq1  GAGATCAGGACCTCTCTCTGCCAGAGCAGGAGTGAATGTGGAATCCCCCG  200
      |   |||  ||| | | ||                      |  ||||  
seq2  G---TCACTACCCCCCCCT---------------------CACCCCCCAA  151

seq1  TCAGAAAAGAGGTCGATGTGGAATCTGA--CCTGTCAGGAAGTAGCGTTT  248
      |||| || |  ||| |||||||||| ||  ||   |||||||| | ||||
seq2  TCAGGAAGGGTGTCAATGTGGAATCCGACCCCCAACAGGAAGTCGTGTTT  201

seq1  GGCTGGTTGTAGAAGTCCAGGCATGGACGAGTGTGCTTAGATATACTGGT  298
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  GGCTGGTTGTACAAGTCCAGGCATGGACGAGTGTGCTTAGATATACTAGT  251

seq1  GTCTTTTTTTCTCTGTTGCTATCTTGTTTTTGTTTGTGGTTTTTGTCATG  348
      |||||||||||||||||||| ||||||||||||||||||||||  |||||
seq2  GTCTTTTTTTCTCTGTTGCTGTCTTGTTTTTGTTTGTGGTTTTCATCATG  301

seq1  AGACACAGACACTGTACATCGGAGTTAAAGTAGAATCCCTCTCTACCTGT  398
       |||| ||                                          
seq2  GGACATAG------------------------------------------  309

seq1  CTGTCTGTATGTCTGTGTGTCTGTCTGTCTTGTTCACTTGTGTGTCCTCC  448
                                                        
seq2  --------------------------------------------------  309

seq1  ATTGGACCACCTTCTGATTCTGTTTTGTTTTTTGTTTGTCTGGTTTCAAG  498
                                             ||||||||| |
seq2  ---------------------------------------CTGGTTTCAGG  320

seq1  TCTGGTTTTGGT-CCCAAGGAGTTGACTGATTATCTTGGTTTGGTTTTAG  547
      |||||||||||| ||||||| ||||||||||||||||| |||||||||||
seq2  TCTGGTTTTGGTCCCCAAGGGGTTGACTGATTATCTTGTTTTGGTTTTAG  370

seq1  GCCGGTCTCAGGTTCTGGGGGCC-TTCCCAT-GGAGAGAGATCCATTTGG  595
      ||| ||||||||||||||||||| ||||||| |||||||| |||||||||
seq2  GCCTGTCTCAGGTTCTGGGGGCCTTTCCCATGGGAGAGAGGTCCATTTGG  420

seq1  GTT-GGTCGTAGTGACAGTGAG  616
      ||| ||||| ||||||||||||
seq2  GTTGGGTCGCAGTGACAGTGAG  442


seq1: chr10_129880866_129881991
seq2: B6Ng01-274D16.g_63_1171

seq1  GAATTCTCCGATTATCTTAATGTCTTTGAAGAGATCAGCTTGCCTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGATTATCTTAATGTCTTTGAAGAGATCAGCTTGCCTTTTTA  50

seq1  CTTGCTAACTTTTCCCCTTTCGTTCATGGTGGCTAACATTTTAAACGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAACTTTTCCCCTTTCGTTCATGGTGGCTAACATTTTAAACGTGA  100

seq1  CCTCATCTCTGTTCCTCAGGATACATTAGACAGCAGTTTTTTTAGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTCTGTTCCTCAGGATACATTAGACAGCAGTTTTTTTAGTCCTT  150

seq1  TAACCAGAACTGGATTGTGGTTTTGTGAAATTTTGCTGTGCCACTACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGAACTGGATTGTGGTTTTGTGAAATTTTGCTGTGCCACTACCTC  200

seq1  AGGATGACATCCTGCATTTTCAGGATTTTCAGAGTCATTGCTCTGGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACATCCTGCATTTTCAGGATTTTCAGAGTCATTGCTCTGGTCTT  250

seq1  CCCCTTTTCCGTCTTTTTCAGAAGTTGGACATTCCCCTTTTCCTGAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTCCGTCTTTTTCAGAAGTTGGACATTCCCCTTTTCCTGAAGTA  300

seq1  TCAGTAACTGTTTTCTTGGGTGGAGAATCGGATTGGTCAGCAGCACTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACTGTTTTCTTGGGTGGAGAATCGGATTGGTCAGCAGCACTGTC  350

seq1  TTTCTCTGTGTTTTTTGGCTTGGGATCTTCACTGCCAGGCTCTGGACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGTTTTTTGGCTTGGGATCTTCACTGCCAGGCTCTGGACTCC  400

seq1  CTTGTCCACCTCCTCCCCAAGCACTCTGGATGCCCCATTTTTTTCCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCACCTCCTCCCCAAGCACTCTGGATGCCCCATTTTTTTCCCACT  450

seq1  GATTTGCTATTTAAGCAACTAGCTCCTGAGGAAATTTTGGAGTCCTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCTATTTAAGCAACTAGCTCCTGAGGAAATTTTGGAGTCCTTAGA  500

seq1  TTTCTTGTGTGTAGAAGTTTGACCACTGGAGCCCGACGCAGGTAGAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTGTGTAGAAGTTTGACCACTGGAGCCCGACGCAGGTAGAGTTG  550

seq1  TGGTTTTCTGGGCTTTGCATCGCTCTGGCTGTTCTTTCTTAGGTGACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCTGGGCTTTGCATCGCTCTGGCTGTTCTTTCTTAGGTGACCCC  600

seq1  AAGATGAAATTCTCTTATGGTGTGTAATGTTTCTGGGCAAATCGCAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAATTCTCTTATGGTGTGTAATGTTTCTGGGCAAATCGCAAGAG  650

seq1  CTATCTCCTCTCTCTTCTGTCTCTAATTGTATAAACAAAGTACTCCGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCCTCTCTCTTCTGTCTCTAATTGTATAAACAAAGTACTCCGGAG  700

seq1  CACTCTGCTTAATATTGGGAATAATATTCTCCACTAGAGCCTCGTGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCTTAATATTGGGAATAATATTCTCCACTAGAGCCTCGTGAAGA  750

seq1  ATGAATTTTACCAGAGGAGATTTAAAACTCTCGGCATGGCTTTTAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTTACCAGAGGAGATTTAAAACTCTCGGCATGGCTTTTAAGAAT  800

seq1  TCACGTAATTCTTAAATAGTTGTGCTGAGACCATCTGGCTTAAATGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTAATTCTTAAATAGTTGTGCTGAGACCATCTGGCTTAAATGGAAT  850

seq1  TTTGTTCTTATAAAAGCG-AAGGTAACTCGAGTCCTTTTGATATCGGATA  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTGTTCTTATAAAAGCGAAAGGTAACTCGAGTCCTTTTGATATCGGATA  900

seq1  TCTTTGAAGTTTGGGTACTTATGTCCTTGTACAGATCTCTCGCCACATAG  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAG-TTGGGTACTTATGTCCTTGTACAGATCTCTCGCCACATAG  949

seq1  AAGCTTCTCTTTGGTTTAGCATTTCCTTCAGTGGACTCGCTGCCCTGCTC  999
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTCTTGGGTTTAGCATTTCCTTCAGTGGACTCGCTGCCCTGCTC  999

seq1  CTCGCCCTGCGCCTCTGCGTGGTCCTTGGGCACGGGCTGGCGCAAGGCCG  1049
      ||||||||||| |||||||| |||||  ||||||||||||||||    ||
seq2  CTCGCCCTGCG-CTCTGCGT-GTCCT--GGCACGGGCTGGCGCA---GCG  1042

seq1  ACCTCCAACTCTCTCCGGAGGTTTCTTGGGCTGCTCGGGCTCCGGCTCTA  1099
      ||   ||||| ||||  |||  ||||| |||||||| |||||||||||||
seq2  AC--TCAACT-TCTCTCGAG--TTCTT-GGCTGCTC-GGCTCCGGCTCTA  1085

seq1  AATCGGTAGGCCAAGTGGAGTCCAGTC  1126
      |||| ||||||  |||| |||||||||
seq2  AATC-GTAGGC--AGTGCAGTCCAGTC  1109


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