BAC Information

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BAC

Clone NameB6Ng01-275E22
ChromosomeX (Build37)X (Build37)
Map Location 95,404,736 - 95,405,93195,274,897 - 95,276,018
singlet/doubletsingletsinglet
Overlap geneAr
Upstream geneEda2r, LOC668244
Downstream geneLOC100042324, Ophn1, Yipf6, LOC100042932, Stard8, LOC436219, Efnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275E22.bB6Ng01-275E22.g
ACCGA076383GA076384
length1,1801,137
definitionB6Ng01-275E22.b B6Ng01-275E22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,404,736 - 95,405,931)(95,274,897 - 95,276,018)
sequence
gaattcctacatccatggtgtaagaacggactgaagtacctatagtcgaa
gcagcagaagagtttgcagtctttgctgttatagattctttttcttttta
tattttttaatatttatttatttacttatttatttggttttttgagacag
ggtttctctgtgtagccctggctgtcttggaactcactttgtagaccagg
ttggcctcgaactcagaaatccacttgcttctgcttcccaagtgctggga
ttaaaggtgtgtcccaaaaaaagcacaaaaagtctagcttctttggactt
ttagttttgtctttctacaatgtatgtattcagttatgcaatccaaagaa
gagactctacaagtcagtcactagcaatgactaagtcactcattaagaca
gtttataggggtagctaatttcaccattctctttaggattctctcaaggc
tgtattgtgattaaaaaaaaataataccatatcaatcgttacaagttctt
gatactggagctaaaagtaattgtaagtgattgatactggtataatctaa
tcttcagtcttgctgtgacatctagtacagtaaataaaaatctttccctt
aagtatattgttaaaacaagtgcagaattcaacaaggaacatgatgtgaa
atacaatagcttgcctttctaagctctcaagtgtgacagttgtttgaagg
gagtcccaaattcctccagaacccgtagaactgagcgttcagtgtagagt
agaagtgctcctggattgtcagtgctatctccatatatcaaatcattctt
aagagcagtgacgagacttcctttttaaaaaaggatttcatccaattttc
tttcaaaatatgaaaacatggtgattctttgtataaatctgcattgttct
cccatttacttaaaaagagaactctctggagcttgtatacttctctattg
gttagcctaatctctttcagctccacctaaataaagcactgtgcataggt
cttcaattccacattaacaataagtacttctttcagtgcctattccaaca
catgtttgctgtttgtttgtttgttgtttttttactaataagtcatggcc
atcacttaggatagtgtcatcagtgctgtaagcagatcttgctctggaag
tttatcattttacctttctccataatttga

gatgggggttgccccggcgtggaaagtctgcaggcaatgatattagtagt
ttaaacaagacctgaaccacagaaacgcctgttgatacgacaatgtggat
aggaaatagtttggagggtcctaccttgagatgaagtgctagagccaatt
agtgactgcttagaaggaaaaaagatcaattttctccagaaacgagtccc
ctaattgactctcaaataccaagtggtcaggtctttaaaattataaagtt
gagtaacacaaaatacaacttaacaggatatatatagagatagagataga
gatagagatagatatgaataacaatttttaaaaagggggagaccagcatt
tgagaaagaatgaaagggacataaggttggagggatgagagggagagcca
aataatataaatacaatatacatgtatgaaagtaatacaatacttttaaa
aagaataaagagtaaaattactataactcatatgaagacattatacagaa
ataataagcattattgccaagaatttgggtatataaatacatacataaat
atagtaaaatacagaaaccagagacagacttacaaaaacataactcatta
ttaagaaaggtctaactcagtacagtgacatatacctgaaattcttgtac
ttcgaaggctagggtaggaggatcagaactttgagggcagcctgggctat
atagagagacactgtcttggcaaaataaaggaaggaaggaaggacgtgaa
tgatctagagagggagggaaggaaagggacatagaaagaaaaattatttc
attaagcaaatggtattgggaaaactgaacatatgtgtgtgtgaaaagaa
catgtacataagtctaacactttataaaaataggtaagtagacaatgggc
aaaacataaagtagaagactatgagttcctaacaggaccccaaaactacc
acacatatcagagatccaggagttacatgaacctgtttgccttctctctg
tgtatacatagggcaccctagccctgctcactagagatatcctctccagc
tcatgcactcttgaaatatactgtatacccatcactctacaaggagctac
agctcacatgtggtgcagaccgagccctagtttgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_95404736_95405931
seq2: B6Ng01-275E22.b_43_1222 (reverse)

seq1  TCCAATTATG----AAAGTAAAATGATAAA-TTCAAGAGCAAGATCTTGC  45
      || |||||||    || ||||||||||||| ||| ||||||||||| |||
seq2  TCAAATTATGGAGAAAGGTAAAATGATAAACTTCCAGAGCAAGATC-TGC  49

seq1  TTACAAGCACCCTGATGGACACCTTATTCTTAAAAGTGATGGCCATGACC  95
      |||| ||||  ||||| |||||  ||| ||   ||||||||||||||| |
seq2  TTAC-AGCA--CTGAT-GACAC--TATCCT---AAGTGATGGCCATGA-C  89

seq1  TTATTAGTTAAAAAAAACAAACAAACAAACAAACAAGCAAAACATGTGGT  145
      ||||||||  |||||||| ||||||||||||||| ||| |||||||| ||
seq2  TTATTAGT--AAAAAAAC-AACAAACAAACAAAC-AGC-AAACATGT-GT  133

seq1  TGGAATAGGCACTGAAAGAAGTTACTTTATTGTTAATGTGGAAATTTGAA  195
      ||||||||||||||||||||| ||| |||||||||||||||||  |||||
seq2  TGGAATAGGCACTGAAAGAAG-TAC-TTATTGTTAATGTGGAA--TTGAA  179

seq1  GACCTATGCACAGTGCTTTATTTAGGTGGAGCTGAAAGAGATTAGGCTAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATGCACAGTGCTTTATTTAGGTGGAGCTGAAAGAGATTAGGCTAA  229

seq1  CCAATAGAGAAGTATACAAGCTCCAGAGAGTTCTCTTTTTAAGTAAATGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGAGAAGTATACAAGCTCCAGAGAGTTCTCTTTTTAAGTAAATGG  279

seq1  GAGAACAATGCAGATTTATACAAAGAATCACCATGTTTTCATATTTTGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAATGCAGATTTATACAAAGAATCACCATGTTTTCATATTTTGAA  329

seq1  AGAAAATTGGATGAAATCCTTTTTTAAAAAGGAAGTCTCGTCACTGCTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTGGATGAAATCCTTTTTTAAAAAGGAAGTCTCGTCACTGCTCT  379

seq1  TAAGAATGATTTGATATATGGAGATAGCACTGACAATCCAGGAGCACTTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGATTTGATATATGGAGATAGCACTGACAATCCAGGAGCACTTC  429

seq1  TACTCTACACTGAACGCTCAGTTCTACGGGTTCTGGAGGAATTTGGGACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTACACTGAACGCTCAGTTCTACGGGTTCTGGAGGAATTTGGGACT  479

seq1  CCCTTCAAACAACTGTCACACTTGAGAGCTTAGAAAGGCAAGCTATTGTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAAACAACTGTCACACTTGAGAGCTTAGAAAGGCAAGCTATTGTA  529

seq1  TTTCACATCATGTTCCTTGTTGAATTCTGCACTTGTTTTAACAATATACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATCATGTTCCTTGTTGAATTCTGCACTTGTTTTAACAATATACT  579

seq1  TAAGGGAAAGATTTTTATTTACTGTACTAGATGTCACAGCAAGACTGAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAAAGATTTTTATTTACTGTACTAGATGTCACAGCAAGACTGAAG  629

seq1  ATTAGATTATACCAGTATCAATCACTTACAATTACTTTTAGCTCCAGTAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTATACCAGTATCAATCACTTACAATTACTTTTAGCTCCAGTAT  679

seq1  CAAGAACTTGTAACGATTGATATGGTATTATTTTTTTTTAATCACAATAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTTGTAACGATTGATATGGTATTATTTTTTTTTAATCACAATAC  729

seq1  AGCCTTGAGAGAATCCTAAAGAGAATGGTGAAATTAGCTACCCCTATAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGAGAGAATCCTAAAGAGAATGGTGAAATTAGCTACCCCTATAAA  779

seq1  CTGTCTTAATGAGTGACTTAGTCATTGCTAGTGACTGACTTGTAGAGTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAATGAGTGACTTAGTCATTGCTAGTGACTGACTTGTAGAGTCT  829

seq1  CTTCTTTGGATTGCATAACTGAATACATACATTGTAGAAAGACAAAACTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGGATTGCATAACTGAATACATACATTGTAGAAAGACAAAACTA  879

seq1  AAAGTCCAAAGAAGCTAGACTTTTTGTGCTTTTTTTGGGACACACCTTTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAAAGAAGCTAGACTTTTTGTGCTTTTTTTGGGACACACCTTTA  929

seq1  ATCCCAGCACTTGGGAAGCAGAAGCAAGTGGATTTCTGAGTTCGAGGCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTTGGGAAGCAGAAGCAAGTGGATTTCTGAGTTCGAGGCCA  979

seq1  ACCTGGTCTACAAAGTGAGTTCCAAGACAGCCAGGGCTACACAGAGAAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTCTACAAAGTGAGTTCCAAGACAGCCAGGGCTACACAGAGAAAC  1029

seq1  CCTGTCTCAAAAAACCAAATAAATAAGTAAATAAATAAATATTAAAAAAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCAAAAAACCAAATAAATAAGTAAATAAATAAATATTAAAAAAT  1079

seq1  ATAAAAAGAAAAAGAATCTATAACAGCAAAGACTGCAAACTCTTCTGCTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGAAAAAGAATCTATAACAGCAAAGACTGCAAACTCTTCTGCTG  1129

seq1  CTTCGACTATAGGTACTTCAGTCCGTTCTTACACCATGGATGTAGGAATT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACTATAGGTACTTCAGTCCGTTCTTACACCATGGATGTAGGAATT  1179

seq1  C  1196
      |
seq2  C  1180


seq1: chrX_95274897_95276018
seq2: B6Ng01-275E22.g_49_1137 (reverse)

seq1  CATCAAAACTAGGGGGCTCTGGTTCTGCACCACATGTTGAAGCTGTGGGC  50
      |||| |||||||||    || | ||||||||||||||   ||||||  ||
seq2  CATC-AAACTAGGG----CTCGGTCTGCACCACATGT--GAGCTGT-AGC  42

seq1  TCCTTTGTAAGAAGTGGAATTGGGGTATACAGTATATTTCAAAGAAGTGG  100
      ||| |||||   ||||  ||  ||||||||||||||||||||   |||| 
seq2  TCC-TTGTA--GAGTG--AT--GGGTATACAGTATATTTCAA--GAGTG-  82

seq1  CAATGAGCTGGGAAGAGGGGATATCTCTAGTGGAGGCAGGGCTAGGGGTG  150
        ||||||||    ||| ||||||||||||||   ||||||||| |||||
seq2  -CATGAGCTG----GAGAGGATATCTCTAGTG--AGCAGGGCTA-GGGTG  124

seq1  CCCTATGTATACCACAGAGGAGGAAGGGCAAACAGGTTCATGTAACCTCC  200
      ||||||||||| |||||| |||  | ||||||||||||||||||||   |
seq2  CCCTATGTATA-CACAGA-GAG--AAGGCAAACAGGTTCATGTAAC--TC  168

seq1  CTGGATCTCTGATATGTGTGGTAGTTTTGGGGTCCCTGTTAGGAACTCAT  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGGATCTCTGATATGTGTGGTAGTTTTGGGGT-CCTGTTAGGAACTCAT  217

seq1  AGTCTTCTACTTTATGTTTTGCCCATTGTCTACTTACCTATTTTTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTACTTTATGTTTTGCCCATTGTCTACTTACCTATTTTTATAAA  267

seq1  GTGTTAGACTTATGTACATGTTCTTTTCACACACACATATGTTCAGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGACTTATGTACATGTTCTTTTCACACACACATATGTTCAGTTTT  317

seq1  CCCAATACCATTTGCTTAATGAAATAATTTTTCTTTCTATGTCCCTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATACCATTTGCTTAATGAAATAATTTTTCTTTCTATGTCCCTTTCC  367

seq1  TTCCCTCCCTCTCTAGATCATTCACGTCCTTCCTTCCTTCCTTTATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCCTCTCTAGATCATTCACGTCCTTCCTTCCTTCCTTTATTTTG  417

seq1  CCAAGACAGTGTCTCTCTATATAGCCCAGGCTGCCCTCAAAGTTCTGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGTGTCTCTCTATATAGCCCAGGCTGCCCTCAAAGTTCTGATC  467

seq1  CTCCTACCCTAGCCTTCGAAGTACAAGAATTTCAGGTATATGTCACTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACCCTAGCCTTCGAAGTACAAGAATTTCAGGTATATGTCACTGTA  517

seq1  CTGAGTTAGACCTTTCTTAATAATGAGTTATGTTTTTGTAAGTCTGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTAGACCTTTCTTAATAATGAGTTATGTTTTTGTAAGTCTGTCTC  567

seq1  TGGTTTCTGTATTTTACTATATTTATGTATGTATTTATATACCCAAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTGTATTTTACTATATTTATGTATGTATTTATATACCCAAATTC  617

seq1  TTGGCAATAATGCTTATTATTTCTGTATAATGTCTTCATATGAGTTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAATAATGCTTATTATTTCTGTATAATGTCTTCATATGAGTTATAG  667

seq1  TAATTTTACTCTTTATTCTTTTTAAAAGTATTGTATTACTTTCATACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTACTCTTTATTCTTTTTAAAAGTATTGTATTACTTTCATACATG  717

seq1  TATATTGTATTTATATTATTTGGCTCTCCCTCTCATCCCTCCAACCTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTATTTATATTATTTGGCTCTCCCTCTCATCCCTCCAACCTTAT  767

seq1  GTCCCTTTCATTCTTTCTCAAATGCTGGTCTCCCCCTTTTTAAAAATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTTCATTCTTTCTCAAATGCTGGTCTCCCCCTTTTTAAAAATTGT  817

seq1  TATTCATATCTATCTCTATCTCTATCTCTATCTCTATATATATCCTGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATCTATCTCTATCTCTATCTCTATCTCTATATATATCCTGTTA  867

seq1  AGTTGTATTTTGTGTTACTCAACTTTATAATTTTAAAGACCTGACCACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATTTTGTGTTACTCAACTTTATAATTTTAAAGACCTGACCACTT  917

seq1  GGTATTTGAGAGTCAATTAGGGGACTCGTTTCTGGAGAAAATTGATCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGAGAGTCAATTAGGGGACTCGTTTCTGGAGAAAATTGATCTTT  967

seq1  TTTCCTTCTAAGCAGTCACTAATTGGCTCTAGCACTTCATCTCAAGGTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTAAGCAGTCACTAATTGGCTCTAGCACTTCATCTCAAGGTAG  1017

seq1  GACCCTCCAAACTATTTCCTATCCACATTGTCGTATCAACAGGCGTTTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCCAAACTATTTCCTATCCACATTGTCGTATCAACAGGCGTTTCT  1067

seq1  GTGGTTCAGGTCTTGTTTAAAC  1122
      ||||||||||||||||||||||
seq2  GTGGTTCAGGTCTTGTTTAAAC  1089


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