BAC Information

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BAC

Clone NameB6Ng01-275L08
ChromosomeX (Build37)
Map Location 129,424,612 - 129,425,696
singlet/doubletsinglet
Overlap geneLOC665846
Upstream geneEG631264
Downstream geneLOC665850, LOC665854, LOC100040794, Pcdh19, LOC100040831, Tnmd, Tspan6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275L08.bB6Ng01-275L08.g
ACCGA076673GA076674
length1,083985
definitionB6Ng01-275L08.b B6Ng01-275L08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacattagataaaatgttacccatggtgaatatataaaatttcta
aataaacttaaaataaattaaaaacctatttattttcttctcttcctgaa
gttaacacaaatgattctcttgactctaaccaccatatatgtcaatgtat
caatgtttcttttaagaaataaagtttctttctgtgttttgtttttgttg
tttgtttgttttgaacatactcaaaaatttaaggaacttttattctttca
gaggggaaaaatacagtcccttaacatggtgctacctgtagtatccactt
ggttttaaatacaaccttgaaaatattaaagttgtttgttcatttttttc
tgtaactgtttgcaacagatatcttcagattcagaatatatcagtgattt
taagtgctgaattttcattttctgttgttacgtgaaatgtttagtacaga
aacctaaaagaggttaatattggaagcatgacactattagaggagggcta
ccttaaggggaaagaaatagcaagtaaaaagcctgaagcgagaaaatgtc
tggcatacctaaagtacaagttagtttttaggtcagtatttcagaaaagc
cagtgaaagaagagtcgcttaataaaacattaaatacaaggagatgacaa
caatgtcttcgtggacattgttaagttatgacttttcacttttaatattc
actgaaagaatagtctagtgacacaaacagatctatattttaatcttatt
actgcagttgctacagatttttttgaggtaggaaaagggtgaaaacaagg
aaatgaatgaaggctcttttgcagagatccgcctaagaggaaagagtgat
ataagccataaaataatgttaagagaaaggtgatatgccaatgatagttt
ctgggtttttgtcccaacaacttggaagaaatggatgtgtcactaaattt
ccttggaggaaaaaaaaaaaaaaaaacctagttcggaagcatgctaacta
tgtgtaatgtctccataggacatgtcataggtagtagaatatgcagtagt
ctggtattgaaagatggagacgagtcaatgata

gaattctcatctgataccgaatgactgagaagcacatgaaaaaaatgttc
aacatgcttaatcatcagggaaagcaaatcaaaacaaccttgagatttca
cctcacaccagtcagaatgggtaagatcaaaaattcaggtgacagcagat
gctggcaaggatgtggagaaagaagaacactcatccattgctggtgggat
tgcaagtttgtacaaccactctggaagtcagtctggaggttcctcagaaa
attggacataatactactggaagatccagcaatacctctcctgggcatat
acccaggagaaggtccaactggtaataagaacacatgctccactatgttc
atattgccttatttataatagccagaagctgggaagaacctacatgtccc
tcaatagaagaatggatacagaaaatgtggtacatttacacaattgggta
ctactcagctactaaaaacaatgaatttatgaaattcttggacaaatgga
tatatctggaggatatcatccttagtgaggtaacccaatcacaaaagaag
tcattagatatgcactcactgataagtgagaagtgagaccctgtcttgta
tgaggctatgccagtgcctggcaaatacagaagtggatgctcacagtcat
ctataagatggaacacagagcccacaatggagaagctagagaaagcacct
aaggagctaaaagggtctgcaaccgtataggtggaacaacaatatgaatt
aaccagtatccccagagctcgtgtctctagctgcatatgtagcagaagat
ggcctagtcggccatcactgggaagagaggccccttggtattgtaaactt
tatatgcccccgtataggggagcaccagggcccagaagcgggagtgggtg
ggtcggggagcaggcgggtggaaggtataagtaacttttgggatagcatt
tgaaatttgagtgtatataagaatatctaataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_129424612_129425696
seq2: B6Ng01-275L08.b_42_1124

seq1  GAATTCACATTAGATAAAATGTTACCCATGGTGAATATATAAAATTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTAGATAAAATGTTACCCATGGTGAATATATAAAATTTCTA  50

seq1  AATAAACTTAAAATAAATTAAAAACCTATTTATTTTCTTCTCTTCCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTTAAAATAAATTAAAAACCTATTTATTTTCTTCTCTTCCTGAA  100

seq1  GTTAACACAAATGATTCTCTTGACTCTAACCACCATATATGTCAATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACACAAATGATTCTCTTGACTCTAACCACCATATATGTCAATGTAT  150

seq1  CAATGTTTCTTTTAAGAAATAAAGTTTCTTTCTGTGTTTTGTTTTTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTCTTTTAAGAAATAAAGTTTCTTTCTGTGTTTTGTTTTTGTTG  200

seq1  TTTGTTTGTTTTGAACATACTCAAAAATTTAAGGAACTTTTATTCTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTTGAACATACTCAAAAATTTAAGGAACTTTTATTCTTTCA  250

seq1  GAGGGGAAAAATACAGTCCCTTAACATGGTGCTACCTGTAGTATCCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAAAAATACAGTCCCTTAACATGGTGCTACCTGTAGTATCCACTT  300

seq1  GGTTTTAAATACAACCTTGAAAATATTAAAGTTGTTTGTTCATTTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAAATACAACCTTGAAAATATTAAAGTTGTTTGTTCATTTTTTTC  350

seq1  TGTAACTGTTTGCAACAGATATCTTCAGATTCAGAATATATCAGTGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTGTTTGCAACAGATATCTTCAGATTCAGAATATATCAGTGATTT  400

seq1  TAAGTGCTGAATTTTCATTTTCTGTTGTTACGTGAAATGTTTAGTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTGAATTTTCATTTTCTGTTGTTACGTGAAATGTTTAGTACAGA  450

seq1  AACCTAAAAGAGGTTAATATTGGAAGCATGACACTATTAGAGGAGGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAAAGAGGTTAATATTGGAAGCATGACACTATTAGAGGAGGGCTA  500

seq1  CCTTAAGGGGAAAGAAATAGCAAGTAAAAAGCCTGAAGCGAGAAAATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGGGGAAAGAAATAGCAAGTAAAAAGCCTGAAGCGAGAAAATGTC  550

seq1  TGGCATACCTAAAGTACAAGTTAGTTTTTAGGTCAGTATTTCAGAAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATACCTAAAGTACAAGTTAGTTTTTAGGTCAGTATTTCAGAAAAGC  600

seq1  CAGTGAAAGAAGAGTCGCTTAATAAAACATTAAATACAAGGAGATGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAAGAAGAGTCGCTTAATAAAACATTAAATACAAGGAGATGACAA  650

seq1  CAATGTCTTCGTGGACATTGTTAAGTTATGACTTTTCACTTTTAATATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTTCGTGGACATTGTTAAGTTATGACTTTTCACTTTTAATATTC  700

seq1  ACTGAAAGAATAGTCTAGTGACACAAACAGATCTATATTTTAATCTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGAATAGTCTAGTGACACAAACAGATCTATATTTTAATCTTATT  750

seq1  ACTGCAGTTGCTACAGATTTTTTTGAGGTAGGAAAAGGGTGAAAACAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTTGCTACAGATTTTTTTGAGGTAGGAAAAGGGTGAAAACAAGG  800

seq1  AAATGAATGAAGGCTCTTTTGCAGAGATCCGCCTAAGAGGAAAGAGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATGAAGGCTCTTTTGCAGAGATCCGCCTAAGAGGAAAGAGTGAT  850

seq1  ATAAGCCATAAAATAATGTTAAGAG-AAGGTGATATGCCAATGATAGTTT  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATAAGCCATAAAATAATGTTAAGAGAAAGGTGATATGCCAATGATAGTTT  900

seq1  CTGGGTTTTTGTCCCAACAACTTGGAAGAAATGGATGTGTCACTAAATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTTTGTCCCAACAACTTGGAAGAAATGGATGTGTCACTAAATTT  950

seq1  CCTTGGAGG-AAAAAAAAAAAAAAAACCTAGTTCGGAAGCATGCTAACTA  998
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGGAAAAAAAAAAAAAAAAACCTAGTTCGGAAGCATGCTAACTA  1000

seq1  TGTGTTAATGTCTCCATAGGACATGTCAATAGGTAGTTAGATAATGCAGT  1048
      |||| |||||||||||||||||||||| |||||||| ||||  |||||||
seq2  TGTG-TAATGTCTCCATAGGACATGTC-ATAGGTAG-TAGAATATGCAGT  1047

seq1  AGTCTGGTATTGAAAGATGGAGACAGAGTCAATGATA  1085
      |||||||||||||||||||||||| ||||||||||||
seq2  AGTCTGGTATTGAAAGATGGAGAC-GAGTCAATGATA  1083


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