BAC Information

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BAC

Clone NameB6Ng01-277M13
ChromosomeX (Build37)
Map Location 39,171,406 - 39,328,249
singlet/doubletdoublet
Overlap geneThoc2, LOC665488, EG333830, LOC100039838
Upstream geneLOC385344, Gria3, LOC100039802, LOC676077
Downstream geneBirc4, Stag2, LOC100039899, Sh2d1a, Odz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277M13.bB6Ng01-277M13.g
ACCGA078207GA078208
length1,126924
definitionB6Ng01-277M13.b B6Ng01-277M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,171,406 - 39,172,085)(39,327,531 - 39,328,249)
sequence
gaattcaattcccaacaaccacatggaggctcacagccatctgtaatgtg
atttgatgccctcttctggtgtgtctgaagagagcaatggtgcattcgta
tacataaaataaataaataaatccttgaaaaaacctttcatgtttcattt
attttatgcgaatgtatgtttccttgcatgtatgtatgtatgtatgtctg
tgtatgacataaatgcctgatgcccagaggccagaagaaggtatcagatc
ccctagaactagagttacaaatgactgttagctgccacatgggttttggg
aactaaacctgggtcctgtggaaaagcagtcagtgttcttaaccttgcag
agcagtctctctagttcaagatgcaaaacttcttaaaatcttgtaaacag
aactcaagaacacattaaaatcatgcaccataaccaaactcaattcattt
caggcatgaaagaatggttcaagaaatataatacagtagatagacacact
caggattagaaatcacaattttatgccaataactgcagagaaacactgat
aacaacatccttccatgaattaaaaaaaaaacaaaaccctaagggaacta
gaaatacagggaccatataacaaaccttcaaaagcactttaggcaaaatc
agactcaacccatttattatagtactcaaaatcttagctagagcagtaaa
caagaaaatgaactgaaagagataataggaaagaaaaacttcaaaccata
tctatttaaaatgtaacatgagcctatccttaaaaaggtccagaagaata
caccagaaagtccttatttctaataaacacattaaacaaattaacaggct
acaaagtaacatgaaaattaaaagctctatttactaaagattaaattgtt
gaggaagaaatcatccacaataactttacaaaaagcaaatacttaggaat
tgtcctgaggaaataagagagtagagattaaaaagagactaactgagaga
tactgtcctattcaacttattattgctttatttatcttatttcagcatta
ttaattttagatgctattttgttttctaatgagtaagaacgactagattg
ggtgagtagggaggtggatgaagaac

gaattcattttttatatccccttttatctccacacagaaattaggccaca
aatcacttgctctcgcagctaatccacctgtctgagttgctctggggctg
gaatctccaacctctggtttagcacctcctgattagagcagctggaggct
aggcaaagccttggcagggaatcatacttctctaagttgaagtttcaggg
agaaaagtggagggggacttatgtctgccctttgttctcagtgcttgtta
agacccacagagcgtatgttcacatggtgaaaaaaaagctcactacgaga
atgcacataaattcagtcatacattgaataagaggttataacagagaatg
cctatgtgcacatacactaggagcttaactttcaccacttgttactcgct
tgcagggtcatggaaagtttaaaactaattaaggcaaccttgatgttttt
gtttagacaaacccagtcaataactcctgtttttgcacctggggtcctgt
ggtgtatatcttcttgatggccttcggttaatggtttctggaaaccctta
gaatgtgccctaagttttaaaactctgctgttatcttagaagcaactaag
cagtctggttataaaaggaactggaatatctctgtggttgttgccaattc
taggtgacccctagcatgctagctgtttctgacgaataaacgctctttgc
ttttgcatactatctgaatctgtgatcttcctttggcaatttacattaca
agaaggtagtgaaagttagtcagcagagaaaataaacaggacgtcatgta
gcggggttccacgtcccctagcgggagttccacgtctgtctgctcagtcc
ttcccagaaattaacaccagaggcattgtatcccccccccccccatgggc
tctggaacgtctctcaagccccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_39171406_39172085
seq2: B6Ng01-277M13.b_500_1171

seq1  CATGAAAGAATGGTTCAAGAAATATAATACAGTAGATAGACACACTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGAATGGTTCAAGAAATATAATACAGTAGATAGACACACTCAGG  50

seq1  ATTAGAAATCACAATTTTATGCCAATAACTGCAGAGAAACACTGATAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATCACAATTTTATGCCAATAACTGCAGAGAAACACTGATAACA  100

seq1  ACATCCTTCCATGAATTAAAAAAAAAACAAAACCCTAAGGGAACTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTTCCATGAATTAAAAAAAAAACAAAACCCTAAGGGAACTAGAAA  150

seq1  TACAGGGACCATATAACAAACCTTCAAAAGCACTTTAGGCAAAATCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGACCATATAACAAACCTTCAAAAGCACTTTAGGCAAAATCAGAC  200

seq1  TCAACCCATTTATTATAGTACTCAAAATCTTAGCTAGAGCAGTAAACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCATTTATTATAGTACTCAAAATCTTAGCTAGAGCAGTAAACAAG  250

seq1  AAAATGAACTGAAAGAGATAATAGGAAAGAAAAACTTCAAACCATATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACTGAAAGAGATAATAGGAAAGAAAAACTTCAAACCATATCTA  300

seq1  TTTAAAATGTAACATGAGCCTATCCTTAAAAAGGTCCAGAAGAATACACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTAACATGAGCCTATCCTTAAAAAGGTCCAGAAGAATACACC  350

seq1  AGAAAGTCCTTATTTCTAATAAACACATTAAACAAATTAACAGGCTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCCTTATTTCTAATAAACACATTAAACAAATTAACAGGCTACAA  400

seq1  AGTAACATGAAAATTAAAAGCTCTATTTACTAAAGATTAAATTGTTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACATGAAAATTAAAAGCTCTATTTACTAAAGATTAAATTGTTGAGG  450

seq1  AAGAAATCATCCACAATAACTTTACAAAAAGCAAAATACTTAGGAATTGT  500
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGAAATCATCCACAATAACTTTACAAAAAGC-AAATACTTAGGAATTGT  499

seq1  CCTGAGGAAATAAGAGAGTAGAGAATTAAAAAGAGACTAACTGAAGAAGA  550
      ||||||||||||||||||||||| ||||||||||||||||||||   |||
seq2  CCTGAGGAAATAAGAGAGTAGAG-ATTAAAAAGAGACTAACTGA--GAGA  546

seq1  TACTGTCCTATTCAACTTA-TATTGCTTTAATTTTATCTTATTTCAGCAT  599
      ||||||||||||||||||| ||||||||||  ||||||||||||||||||
seq2  TACTGTCCTATTCAACTTATTATTGCTTTA--TTTATCTTATTTCAGCAT  594

seq1  TATTAATTTTTAGATGCCTATTTGTTTTCTAATGAGTAAGAAAGGACATA  649
      |||||| ||||||||||   |||||||||||||||||||| || ||| ||
seq2  TATTAA-TTTTAGATGCTATTTTGTTTTCTAATGAGTAAG-AACGAC-TA  641

seq1  GATTTGGGTGAGTAGGGAGGT-GAAGAAGAAC  680
      || |||||||||||||||||| || |||||||
seq2  GA-TTGGGTGAGTAGGGAGGTGGATGAAGAAC  672


seq1: chrX_39327531_39328249
seq2: B6Ng01-277M13.g_66_784 (reverse)

seq1  ATTCAGATAGTATGCAAAAGCAAAGAGCGTTTATTCGTCAGAAACAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATAGTATGCAAAAGCAAAGAGCGTTTATTCGTCAGAAACAGCTA  50

seq1  GCATGCTAGGGGTCACCTAGAATTGGCAACAACCACAGAGATATTCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTAGGGGTCACCTAGAATTGGCAACAACCACAGAGATATTCCAGT  100

seq1  TCCTTTTATAACCAGACTGCTTAGTTGCTTCTAAGATAACAGCAGAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTATAACCAGACTGCTTAGTTGCTTCTAAGATAACAGCAGAGTTT  150

seq1  TAAAACTTAGGGCACATTCTAAGGGTTTCCAGAAACCATTAACCGAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTAGGGCACATTCTAAGGGTTTCCAGAAACCATTAACCGAAGGC  200

seq1  CATCAAGAAGATATACACCACAGGACCCCAGGTGCAAAAACAGGAGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGAAGATATACACCACAGGACCCCAGGTGCAAAAACAGGAGTTAT  250

seq1  TGACTGGGTTTGTCTAAACAAAAACATCAAGGTTGCCTTAATTAGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGTTTGTCTAAACAAAAACATCAAGGTTGCCTTAATTAGTTTTA  300

seq1  AACTTTCCATGACCCTGCAAGCGAGTAACAAGTGGTGAAAGTTAAGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCATGACCCTGCAAGCGAGTAACAAGTGGTGAAAGTTAAGCTCC  350

seq1  TAGTGTATGTGCACATAGGCATTCTCTGTTATAACCTCTTATTCAATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTATGTGCACATAGGCATTCTCTGTTATAACCTCTTATTCAATGTA  400

seq1  TGACTGAATTTATGTGCATTCTCGTAGTGAGCTTTTTTTTCACCATGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAATTTATGTGCATTCTCGTAGTGAGCTTTTTTTTCACCATGTGA  450

seq1  ACATACGCTCTGTGGGTCTTAACAAGCACTGAGAACAAAGGGCAGACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACGCTCTGTGGGTCTTAACAAGCACTGAGAACAAAGGGCAGACATA  500

seq1  AGTCCCCCTCCACTTTTCTCCCTGAAACTTCAACTTAGAGAAGTATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCCTCCACTTTTCTCCCTGAAACTTCAACTTAGAGAAGTATGATT  550

seq1  CCCTGCCAAGGCTTTGCCTAGCCTCCAGCTGCTCTAATCAGGAGGTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCAAGGCTTTGCCTAGCCTCCAGCTGCTCTAATCAGGAGGTGCTA  600

seq1  AACCAGAGGTTGGAGATTCCAGCCCCAGAGCAACTCAGACAGGTGGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGGTTGGAGATTCCAGCCCCAGAGCAACTCAGACAGGTGGATTA  650

seq1  GCTGCGAGAGCAAGTGATTTGTGGCCTAATTTCTGTGTGGAGATAAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGAGAGCAAGTGATTTGTGGCCTAATTTCTGTGTGGAGATAAAAGG  700

seq1  GGATATAAAAAATGAATTC  719
      |||||||||||||||||||
seq2  GGATATAAAAAATGAATTC  719


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