BAC Information

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BAC

Clone NameB6Ng01-277O04
ChromosomeX (Build37)
Map Location 161,596,151 - 161,752,684
singlet/doubletdoublet
Overlap geneGlra2
Upstream geneAce2, Bmx, Pir, Figf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045
Downstream geneLOC100040753, Gemin8, Gpm6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277O04.bB6Ng01-277O04.g
ACCGA078281GA078282
length1,104585
definitionB6Ng01-277O04.b B6Ng01-277O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,596,151 - 161,597,133)(161,752,100 - 161,752,684)
sequence
gaattcagtaagaatgttacctattcagtgacattcagaattgcctctgg
tattacactatcactttgaataaaagctaagtcactgccatacacaggaa
tttaccatcatctgggaagaaggaagtttgagacctaaggaggaaccaga
gtagatacttagaactatagatagctgagttacacccatacacacatatt
tacaatggcctagggggaaggtggactatacaatagactaaaataggaac
tatggcaggggcacgaagcccttgaccctggcttctaagattaagtggat
cttaggtggagctctttttgatcccagttgttaacaatgaattctatccc
aggtggttcctgttagaccttctgtgtttgtattcctctgttttgtgtaa
gaatacagcaacctctttgtaccttgcaggtgtgtcatccaactttccta
ttttcttctgtataaaaagtttgatgctcgatttgacaaattacattcag
attctacacaacctctcctgtgtgcatctgtctgtcatctcatccaacac
tttgcctacctgcgactagagacccgttccacgcagacaaaggggcccag
agggtctgtggcagaacactttgttcttttttttttccttgacagggttt
ctctgtatagccctggctgtcctagaactcactttgtagaccaggctggc
ctcgaactcagaaatctacctgcctctgcctcctgggagtgctggaatta
aaggtgtgtgccaccactcccagctaacactttgttctttatcatgtaat
ttcacaatccttctttcgataaagtcatattctgacaagtcagcttaaat
attttcttgacatttttatgtccagtcaatccatggcatattaatttcac
ttttcttagttttttaatcttcacttaaatttttgccactttacattcta
gcctctgattataagaaagagctttatgttaattctcctgtaaccaacca
attttctgttgaagaatttgcccaagtctccagggttaaataggtttttc
tataatgcaatcttaccatacaatcctcattgtttgaatacccttcatgt
tttc

gaattcagcctgtctctgcctcccaagtgctgggattaaaggcatgcgcc
accaccgcccagcttgggagacatattttcttgggagtaaaaatctcatt
tctctatgtactgtcaaagcaagggatcaatttattgcaagggagcatat
ttgtgcatacaaaatatacatgtaaaggtagtttttatctttatgtttga
ggtctaaacatattttatttgtgtattaataatgtcagttttcacttctg
ttatttcatttcaatgaagattaggatacaatgtaaaagctggatggtga
gtagcccagtatagaaattatgtggtttactcaaaaaggggtgtaaaagg
ttttaggaaaattgaaaatgtggtattctttcagtttaattgcctccccc
ccctcccttttaaatatgtttatgatggcagttggttggtagccattctc
cagagttctttcggagtgaatcttgagttgagttttcagctaaccagggg
cttagtcctttaagaaagtaatcattgggtgggggtgaggggcagaggga
aagatggacctgggtgggagaggggacagggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_161596151_161597133
seq2: B6Ng01-277O04.b_162_1150

seq1  GAAGAAGGAAGTTTGAGACCTAAGGAGGAACCAGAGTAGATACTTAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAAGTTTGAGACCTAAGGAGGAACCAGAGTAGATACTTAGAAC  50

seq1  TATAGATAGCTGAGTTACACCCATACACACATATTTACAATGGCCTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATAGCTGAGTTACACCCATACACACATATTTACAATGGCCTAGGG  100

seq1  GGAAGGTGGACTATACAATAGACTAAAATAGGAACTATGGCAGGGGCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGGACTATACAATAGACTAAAATAGGAACTATGGCAGGGGCACG  150

seq1  AAGCCCTTGACCCTGGCTTCTAAGATTAAGTGGATCTTAGGTGGAGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTTGACCCTGGCTTCTAAGATTAAGTGGATCTTAGGTGGAGCTCT  200

seq1  TTTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGGTTCCTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGGTTCCTGTTA  250

seq1  GACCTTCTGTGTTTGTATTCCTCTGTTTTGTGTAAGAATACAGCAACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCTGTGTTTGTATTCCTCTGTTTTGTGTAAGAATACAGCAACCTC  300

seq1  TTTGTACCTTGCAGGTGTGTCATCCAACTTTCCTATTTTCTTCTGTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACCTTGCAGGTGTGTCATCCAACTTTCCTATTTTCTTCTGTATAA  350

seq1  AAAGTTTGATGCTCGATTTGACAAATTACATTCAGATTCTACACAACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGATGCTCGATTTGACAAATTACATTCAGATTCTACACAACCTC  400

seq1  TCCTGTGTGCATCTGTCTGTCATCTCATCCAACACTTTGCCTACCTGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTGCATCTGTCTGTCATCTCATCCAACACTTTGCCTACCTGCGA  450

seq1  CTAGAGACCCGTTCCACGCAGACAAAGGGGCCCAGAGGGTCTGTGGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGACCCGTTCCACGCAGACAAAGGGGCCCAGAGGGTCTGTGGCAGA  500

seq1  ACACTTTGTTCTTTTTTTTTTCCTTGACAGGGTTTCTCTGTATAGCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTGTTCTTTTTTTTTTCCTTGACAGGGTTTCTCTGTATAGCCCTG  550

seq1  GCTGTCCTAGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTAGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  600

seq1  CTACCTGCCTCTGCCTCCTGGGAGTGCTGGAATTAAAGGTGTGTGCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGCCTCTGCCTCCTGGGAGTGCTGGAATTAAAGGTGTGTGCCACC  650

seq1  ACTCCCAGCTAACACTTTGTTCTTTATCATGTAATTTCACAATCCTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGCTAACACTTTGTTCTTTATCATGTAATTTCACAATCCTTCTT  700

seq1  TCGATAAAGTCATATTCTGACAAGTCAGCTTAAATATTTTCTTGACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATAAAGTCATATTCTGACAAGTCAGCTTAAATATTTTCTTGACATTT  750

seq1  TTATGTCCAGTCAATCCATGGCATATTAATTTCAC-TTTCTTAGTTTTTT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTATGTCCAGTCAATCCATGGCATATTAATTTCACTTTTCTTAGTTTTTT  800

seq1  AATCTTCACTTAAATTTTTGCCACTTTACATTCTAG-CTCTGATTAT-AG  847
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  AATCTTCACTTAAATTTTTGCCACTTTACATTCTAGCCTCTGATTATAAG  850

seq1  AAAGAGCTTTATGTT-ATTCTCCTGTAACCAACC-ATTTTCTGTTTGAAG  895
      ||||||||||||||| |||||||||||||||||| |||||||| ||||||
seq2  AAAGAGCTTTATGTTAATTCTCCTGTAACCAACCAATTTTCTG-TTGAAG  899

seq1  AATTTGCCCAAGTCTCCA-GGTTAAATAAG-TTTTCTATAATGCAAATCT  943
      |||||||||||||||||| ||||||||| | ||||||||||||| |||||
seq2  AATTTGCCCAAGTCTCCAGGGTTAAATAGGTTTTTCTATAATGC-AATCT  948

seq1  TACCATACCATCCTCA-TGTTTGAATACCCTTCATGTTTTC  983
      |||||||| ||||||| ||||||||||||||||||||||||
seq2  TACCATACAATCCTCATTGTTTGAATACCCTTCATGTTTTC  989


seq1: chrX_161752100_161752684
seq2: B6Ng01-277O04.g_67_651 (reverse)

seq1  CCCTCCCTGTCCCCTCTCCCACCCAGGTCCATCTTTCCCTCTGCCCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTGTCCCCTCTCCCACCCAGGTCCATCTTTCCCTCTGCCCCTCA  50

seq1  CCCCCACCCAATGATTACTTTCTTAAAGGACTAAGCCCCTGGTTAGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCAATGATTACTTTCTTAAAGGACTAAGCCCCTGGTTAGCTGA  100

seq1  AAACTCAACTCAAGATTCACTCCGAAAGAACTCTGGAGAATGGCTACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAACTCAAGATTCACTCCGAAAGAACTCTGGAGAATGGCTACCAA  150

seq1  CCAACTGCCATCATAAACATATTTAAAAGGGAGGGGGGGGAGGCAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGCCATCATAAACATATTTAAAAGGGAGGGGGGGGAGGCAATTAA  200

seq1  ACTGAAAGAATACCACATTTTCAATTTTCCTAAAACCTTTTACACCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGAATACCACATTTTCAATTTTCCTAAAACCTTTTACACCCCTT  250

seq1  TTTGAGTAAACCACATAATTTCTATACTGGGCTACTCACCATCCAGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTAAACCACATAATTTCTATACTGGGCTACTCACCATCCAGCTTT  300

seq1  TACATTGTATCCTAATCTTCATTGAAATGAAATAACAGAAGTGAAAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTATCCTAATCTTCATTGAAATGAAATAACAGAAGTGAAAACTG  350

seq1  ACATTATTAATACACAAATAAAATATGTTTAGACCTCAAACATAAAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTAATACACAAATAAAATATGTTTAGACCTCAAACATAAAGATA  400

seq1  AAAACTACCTTTACATGTATATTTTGTATGCACAAATATGCTCCCTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACCTTTACATGTATATTTTGTATGCACAAATATGCTCCCTTGCA  450

seq1  ATAAATTGATCCCTTGCTTTGACAGTACATAGAGAAATGAGATTTTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTGATCCCTTGCTTTGACAGTACATAGAGAAATGAGATTTTTACT  500

seq1  CCCAAGAAAATATGTCTCCCAAGCTGGGCGGTGGTGGCGCATGCCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAAAATATGTCTCCCAAGCTGGGCGGTGGTGGCGCATGCCTTTAA  550

seq1  TCCCAGCACTTGGGAGGCAGAGACAGGCTGAATTC  585
      |||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTTGGGAGGCAGAGACAGGCTGAATTC  585


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