BAC Information

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BAC

Clone NameB6Ng01-278I01
ChromosomeX (Build37)X (Build37)
Map Location 120,767,515 - 120,768,689121,330,817 - 121,331,585
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene3110007F17Rik, LOC100039751, LOC100039763, LOC665281, EG625591
Downstream geneLOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942, LOC100039828, EG434843, EG665463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278I01.bB6Ng01-278I01.g
ACCGA078730GA078731
length1,174773
definitionB6Ng01-278I01.b B6Ng01-278I01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,767,515 - 120,768,689)(121,330,817 - 121,331,585)
sequence
gaattccatatacaactgcaatcatattttatcttttagaatagattaca
atctcttaattgtaacacccggtaaaatcaaagtcaaagcattgtttact
ttcaaagtacactgaaatgaatatacattctcattcaaaataagaggaaa
agaaacataaacaagaaatactggaacaaatcaagatcaaatctagctag
acaaaccccaaatcctaaagttcagtacattgtggcttaaatagctcttc
ctatctagctttaatgactacaatatatttctctatcttgggctggttcc
attctttgtgtgtagctttctttgagagatatcccacagctgtggacctt
cttatatcctgggtgctatatcacaatataggcttccctttcataccttc
acaaatagcctctctaggcatctattcagggacttcgctgcaacctggat
gccctcagtggctttcaataaccaagtaggaagactccttggctccttta
cttctatatccgtcattaatctgatgaaagaactacatggtggatgttgc
caagttcttttgcctgcttaagatagaacctgcctgcttccttgaatact
ttttcataaatttgatatgttgtttttgctataaacagataaatccttag
gacatatttttgcacaagttgcaggattagcttagtggattctcacctcg
aggaaactactccctttattacatcactccttatatctttcaacactaac
tatggctcccacaaaaaaattttctggtgctcttttttctccaaacttag
ttctagctcatcccttgaagaatgagtacaatcaggaaaacaaaagacaa
gaagcattagagatgtgggaataaagtacagctctactgctggtgggtgt
ttaagttggtacatccaggataaaatcagtgtggaattttctaaaaatat
gtaaaaataaaactaactggtgactcacctatatcaccacttgagtgtag
aaaagaatagcatggttatctagtgatacctgcctcagtcatttttgtca
cttggtttccaaaataactgggaagatgcaatcagctgtacataatttgc
tggagagtatgggaacctgaaaaacctatatagagaaagcgcgttaagca
aggccttaaagagaaagtgctacg
gaattccaggacagccagggctatatagagaaactctgtcttgaaaaaaa
aaaaaaaagaatccaaaaacaaaaatacctaacccaaaccaaaccaaacc
aaaccaaaccaaaccaaacaaacaaacaaaaaaaaaaccagccccccaaa
aatattaaaaatacaaaaatcataagaaaaacctttaaagcctaaaaaaa
aaaaaaaaaaacccaaaccccgaaaaaccccaatatccttaaaaaaaaaa
aaaaattgaattacacaagaacctgtaaatgactctaaaactctgttttg
ttgttgttcttgttgttcttttgttttgttttgttgagtttttggagaca
gggtttctctgtgtatccctggctgtcctagaactcactctgtagaccag
gctggccttgaactaagaaatccactacctctgcctcccaagtgcttgga
ttaaagccagggccaccactaactgacaatcttaaaactcgtaaactcta
aaaataaaaccttaaaattaaaaaaaaaaaagaaaaaaccctcaaagggg
ggaaaaaaaaaaaaacctaacaaaaaacttaaaaagaacagcccaaacct
taatacaccctaaaatcctttaaaccccccccccccaaaaaacataaaaa
actctaaaaccctttttttttttttttttttggtgttttttggtttttgg
attttggttttttgggtggttttgggggttttgggagaactgggttttct
ctgtgtatccctggctgtcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_120767515_120768689
seq2: B6Ng01-278I01.b_43_1216

seq1  GAATTCCATATACAACTACAATCATATTTTATCTTTTAGAATAGATTACA  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAATTCCATATACAACTGCAATCATATTTTATCTTTTAGAATAGATTACA  50

seq1  GTCTCTTAATTGTAACACCCTGTAAAATCAAAGTCAAAGCATTGTTTACT  100
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCTCTTAATTGTAACACCCGGTAAAATCAAAGTCAAAGCATTGTTTACT  100

seq1  TTCAAAGTACACTGACATGAATATACATTCTCATTCAAATTAAGAGGAAA  150
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  TTCAAAGTACACTGAAATGAATATACATTCTCATTCAAAATAAGAGGAAA  150

seq1  AGAAACATAAACAGGAAATACTGGAACAAATCAAGATCAAATCTAGCTAG  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAAACATAAACAAGAAATACTGGAACAAATCAAGATCAAATCTAGCTAG  200

seq1  ACAAACCCCAAATCCTAAAGTTCTGTACATTGTGGCTTAAATAGCTCTTC  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACAAACCCCAAATCCTAAAGTTCAGTACATTGTGGCTTAAATAGCTCTTC  250

seq1  CTATCTAGCTTTAATGACTACAATATATTTCTCTGTCTTGGGCTGGTTCC  300
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTATCTAGCTTTAATGACTACAATATATTTCTCTATCTTGGGCTGGTTCC  300

seq1  ATTCTTTGTGTGTAGCTTTCTTTGAGAGATATCCCACAGCTGTGGACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGTGTGTAGCTTTCTTTGAGAGATATCCCACAGCTGTGGACCTT  350

seq1  CTTATATCCTGGGTGCTATATCACAATATAGGCTTCACTTTCATACCTTC  400
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTATATCCTGGGTGCTATATCACAATATAGGCTTCCCTTTCATACCTTC  400

seq1  ACAAATAGCCTCTCTAGGCATCTATTCAGGGACTTCGCTGCAACCTGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGCCTCTCTAGGCATCTATTCAGGGACTTCGCTGCAACCTGGAT  450

seq1  GCCCTCAGGGGCTTTCCATAACCAAGTAGGAAGACTCCATGGCTCCTTTA  500
      |||||||| ||||||| ||||||||||||||||||||| |||||||||||
seq2  GCCCTCAGTGGCTTTCAATAACCAAGTAGGAAGACTCCTTGGCTCCTTTA  500

seq1  CTTCTGTATCCTTCATTAATCTGACAAAAGAACTACATGATGGATGTTGC  550
      ||||| ||||| ||||||||||||  ||||||||||||| ||||||||||
seq2  CTTCTATATCCGTCATTAATCTGATGAAAGAACTACATGGTGGATGTTGC  550

seq1  CAAGTTCTTTTGCCTGCTTAAGATAGAACCTGCCTGCTTCCTTGAATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTTTTGCCTGCTTAAGATAGAACCTGCCTGCTTCCTTGAATACT  600

seq1  TTTTCATAAATTTGATATGTTGTTTTTCTGCTATAAACAGATAAATCCTT  650
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  TTTTCATAAATTTGATATGTTGTTTT--TGCTATAAACAGATAAATCCTT  648

seq1  AGGACATTTCTTTGCACAACTTGCAGGATTAGCTTGGTGGATTCTCACCT  700
      ||||||| | ||||||||| ||||||||||||||| ||||||||||||||
seq2  AGGACATATTTTTGCACAAGTTGCAGGATTAGCTTAGTGGATTCTCACCT  698

seq1  TGAGGAAACTACTCCCTTTATTACATTACTCCTTATATCTTTCAACACTA  750
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CGAGGAAACTACTCCCTTTATTACATCACTCCTTATATCTTTCAACACTA  748

seq1  ACTATGGCTCCCACAAAAAAAATTTTCTGGTGCTCTTTTTTTCTCCAAAC  800
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  ACTATGGCTCCCAC-AAAAAAATTTTCTGGTGCTC-TTTTTTCTCCAAAC  796

seq1  TTAGTTCTAGCTCATCCCTTGAAGAATGAGTACAATCAAGAAAACTAAAG  850
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  TTAGTTCTAGCTCATCCCTTGAAGAATGAGTACAATCAGGAAAACAAAAG  846

seq1  ACAAGAAGCATTAGAGATGTGGGAATAAAGTACACCTCCTCTGCTGGTGG  900
      |||||||||||||||||||||||||||||||||| |||  ||||||||||
seq2  ACAAGAAGCATTAGAGATGTGGGAATAAAGTACAGCTCTACTGCTGGTGG  896

seq1  GTGTTTAAGTTGGTACATCCAGGATAAAATCAGTGTGGAATTTTCTAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAAGTTGGTACATCCAGGATAAAATCAGTGTGGAATTTTCTAAAA  946

seq1  ATATCTAAAAATAGAACTAACTGGTGACTCACGTATATCA-CACTTGAGT  999
      |||| |||||||| |||||||||||||||||| ||||||| |||||||||
seq2  ATATGTAAAAATAAAACTAACTGGTGACTCACCTATATCACCACTTGAGT  996

seq1  GTAGAAAAG-ATAGCGTGGTTATCTAGTGATATTTG-CTCAGTCATTTTT  1047
      ||||||||| ||||| ||||||||||||||||  || |||||||||||||
seq2  GTAGAAAAGAATAGCATGGTTATCTAGTGATACCTGCCTCAGTCATTTTT  1046

seq1  GTCACTTTTGTTTTCAAAATAACT-AGAAGATGCAATCAGGTGTAACTAA  1096
      ||||| || |||| ||||||||||  |||||||||||||| ||| ||  |
seq2  GTCAC-TTGGTTTCCAAAATAACTGGGAAGATGCAATCAGCTGT-ACATA  1094

seq1  ATTTGCTGGAGAGTATATGGAACTTGAAAATACTATAT--AGTAAATGCG  1144
      ||||||||||||||||  ||||| ||||||  ||||||  || ||  |||
seq2  ATTTGCTGGAGAGTAT-GGGAACCTGAAAAACCTATATAGAGAAAGCGCG  1143

seq1  TTAAGTCAGGCCTATAAAGAGAAA-TGCTACG  1175
      |||||  |||||| |||||||||| |||||||
seq2  TTAAGCAAGGCCT-TAAAGAGAAAGTGCTACG  1174

seq1: chrX_121330817_121331585
seq2: B6Ng01-278I01.g_64_836 (reverse)

seq1  CCAGGACAGCCAGGGATACACAGAG-AAACCCAG-TCT-CCAAAACCTCA  47
      ||||||||||||||||||||||||| |||||||| ||| |||||||| | 
seq2  CCAGGACAGCCAGGGATACACAGAGAAAACCCAGTTCTCCCAAAACCCCC  50

seq1  AAAACAAACAAAAAAACAAAAAT-CAAAAAACAAAAAAAACAAAAAAAAA  96
      ||||| | | ||||||| ||||| |||||| ||||||| || ||||||||
seq2  AAAACCACCCAAAAAACCAAAATCCAAAAACCAAAAAACACCAAAAAAAA  100

seq1  AAAAAAAAAAAGAGTTTTAGAGTTTTTTATGTTTTTTGGGGGGGGGGGGT  146
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGGGTTTTAGAGTTTTTTATGTTTTTTGGGGGGGGGGGGT  150

seq1  TTAAAGGATTTTAGGGTGTATTAAGGTTTGGGCTGTTTTTTTTAAGTTTT  196
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAAAGGATTTTAGGGTGTATTAAGGTTTGGGCTGTTCTTTTTAAGTTTT  200

seq1  TTGTTAGGTTTTTTTTTTTTTCCCCCCTTTGAGGGTTTTTTTTTTTTTTT  246
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGTTAGGTTTTTTTTTTTTTCCCCCCTTTGAGGGTTTTTTCTTTTTTTT  250

seq1  TTTTAATTTTAAGGTTTTATTTTTAGAGTTTACGAGTTTTAAGATTGTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTAAGGTTTTATTTTTAGAGTTTACGAGTTTTAAGATTGTCA  300

seq1  GTTAGTGGTGGCCCTGGCTTTAATCCAAGCACTTGGGAGGCAGAGGTAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGGTGGCCCTGGCTTTAATCCAAGCACTTGGGAGGCAGAGGTAGT  350

seq1  GGATTTCTTAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTTAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACA  400

seq1  GCCAGGGATACACAGAGAAACCCTGTCTCCAAAAACTCAACAAAACAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGATACACAGAGAAACCCTGTCTCCAAAAACTCAACAAAACAAAA  450

seq1  CAAAAGAACAACAAGAACAACAACAAAACAGAGTTTTAGAGTCATTTACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAACAACAAGAACAACAACAAAACAGAGTTTTAGAGTCATTTACA  500

seq1  GGTTCTTGTGTAATTCAATTTTTTTTTTTTTTTAAGGATATTGGGGTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTGTGTAATTCAATTTTTTTTTTTTTTTAAGGATATTGGGGTTTT  550

seq1  TCGGGGTTTGGGTTTTTTTTTTTTTTTTTTAGGCTTTAAAGGTTTTTCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGTTTGGGTTTTTTTTTTTTTTTTTTAGGCTTTAAAGGTTTTTCTT  600

seq1  ATGATTTTTGTATTTTTAATATTTTTGGGGGGCTGGTTTTTTTTTTGTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTTGTATTTTTAATATTTTTGGGGGGCTGGTTTTTTTTTTGTTT  650

seq1  GTTTGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGGTTAGGTATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGGTTAGGTATT  700

seq1  TTTGTTTTTGGATTCTTTTTTTTTTTTTTTCAAGACAGAGTTTCTCTATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGGATTCTTTTTTTTTTTTTTTCAAGACAGAGTTTCTCTATA  750

seq1  TAGCCCTGGCTGTCCTGGAATTC  769
      |||||||||||||||||||||||
seq2  TAGCCCTGGCTGTCCTGGAATTC  773