BAC Information

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BAC

Clone NameB6Ng01-278O19
ChromosomeX (Build37)
Map Location 128,136,123 - 128,281,920
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665799, LOC670449
Downstream geneLOC245600, EG631264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278O19.bB6Ng01-278O19.g
ACCGA079039GA079040
length1,1671,063
definitionB6Ng01-278O19.b B6Ng01-278O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,280,743 - 128,281,920)(128,136,123 - 128,137,192)
sequence
gaattctaatagagaaataatccccataaaagcaggctgtaggcagcaag
gccgtagggcattttcttaattactgattgacaggggaaggcaagcccat
tgtgaggaagactgatcctgagcaggtggtcaggggttctgtaagaaaac
aggctaagcacggcatgggaagcaaaagccaataggcaccactcttgcat
ggcttctgaacattgataacaaattgaatatagaacttattattaagtat
tattctatgctgaactctttctcctattgacagtagaaatggaaaagtta
agaaatatgaatattaaaaagattcactcattgccatggtacaaggtata
acacatccacaattattacttggtccaacagactaagctgagaaaccaat
gaacaagacagaaagactgagattcgcatggatcatttgaacactatgaa
accaacagtgagccttaggattaaggagttgactgattctcccttttaaa
tattttcaaatttctctttgataatacttttacgttagtacagaaaataa
cgtcttccattctggagtttcctcagatatctgtcattatagtttgttgg
aattcctttgtctccttcctgccctccttttgtttgtttcctttcctccc
tgctgatggtcctttttcctccttttatgtcacaagcttatattcttact
gccttgacagatagagaatgacaggctcaggtcggccatttaacaactca
gaacatacacagaatgcagatgagtactgtaatagttccctaggagagcc
ataaaaaattactacaatctgagaatagaaacccatgccctcaaaattct
ggaggccacatggttgggaatcaaggcattgatgagatcagtcctttttc
aggcttcaggagatggaccagtttttaccttctctcttagcttctggtgg
ctgacagctattttgcagcctttgatatgtaaattatattcctgtaatct
ctacctctagcttcctataacctctctttggtatctctgaattctattct
attttttaaatagtgtcatatcatatacaggttcctgcctttatctgaga
tatttcatctggaaatcctctagtacattttacaaaggacctatttccat
aggtaacttggaggtat

gaattctggagcagacttaaggtggaggaaatgggaaagtgggtaagcaa
agagggaaagacaggtagtttagaaagaggatggtgtacttattgtaatc
tgaagattagaaacatgtgccattcccttctatgtgaactgatagaatcc
taggtcagtcttaagccatttatgccttcctttgatttctttgcattccc
acattctggtaatgacaatatagctaatcacgacaaaactcacctagtct
tccttactagaaagaaaacatcaaatgaaccctccaacacatatattaaa
tggatgatcattaagaagaaacaataactaaaatgtcttatttaaagtca
tattagtaaaatttatattccattcaagcattttaaggttaatatttcct
attcaatgcttgcttttcattatgacagatgctttcagatgtaagagcca
ttagggaaagcaaactggattctaactcacactaagtgatattctcagcc
cttcagaatgcttgcaaccctctgcacccacccctttcagatcctcttaa
tactgctttttgaaaatggaaaaaaaaaaaaaaaacataacgccaagtgc
tcatttttttttccagaaagaaaatatatcttcctcattttaactgcaaa
tcggtttttggcggccagaggatgctgcatcagcaatcaaagaatcaaga
gtgttagaaaaacattttgtgaagtacagaatcaagtaaagtgaacactc
agcaagcacgttcttcttgtctttgtgtgacacagtttgctagcttgtta
tgcacaaaaactgattcatgtggctttcccagcccgtgtatgttttgcag
caatactgctggcatcctgagataggcttatgctacctattttaggcaca
aaaaagaactaaccacatttacttttgaaacattcaatagaaaagctatg
ttgctttactcgcatgtgtgaggtttgttttgtcagtgtagattttattt
ctatttgatgtgatgggctggctgtcatagtttcaaactgtgcatgagca
tgggatacttcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_128280743_128281920
seq2: B6Ng01-278O19.b_49_1215 (reverse)

seq1  ATACCTCCAAATGTTACCTTATTTGGAAATAGAGTCTTTGTAAATATGTA  50
      ||||||||||  ||||||   | |||||||||   ||||||||| |||| 
seq2  ATACCTCCAA--GTTACC---TATGGAAATAGGTCCTTTGTAAA-ATGT-  43

seq1  ATTAGAGGATTTCAAGATGAAATTATCTCAGATTTAAGGCAGG-ACCTGT  99
      | ||||||||||| |||||||| ||||||||| | |||||||| ||||||
seq2  ACTAGAGGATTTCCAGATGAAA-TATCTCAGA-TAAAGGCAGGAACCTGT  91

seq1  ATATGATAATGAACACTAATTTAAAAATAGAATAGAATTCAGAGATAACC  149
      ||||||| ||| |||||| || |||||||||||||||||||||||| |||
seq2  ATATGAT-ATG-ACACTATTTAAAAAATAGAATAGAATTCAGAGAT-ACC  138

seq1  AAAGAAGAGGTTTATAGGAAGCTAGAGGTAGAGATTACAGGAATAT-ATT  198
      |||| ||||| ||||||||||||||||||||||||||||||||||| |||
seq2  AAAG-AGAGG-TTATAGGAAGCTAGAGGTAGAGATTACAGGAATATAATT  186

seq1  TACATATCAAAGGCTGCAAAATAGCTGTCAGCCACCAGAAGCTAAGAGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCAAAGGCTGCAAAATAGCTGTCAGCCACCAGAAGCTAAGAGAG  236

seq1  -AGGTAAAAACTGGTCCATCTCCTGAAGCCTGAAAAAGGACCTGATCTCA  297
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGGTAAAAACTGGTCCATCTCCTGAAGCCTGAAAAAGGA-CTGATCTCA  285

seq1  TCAATGCCTTGATT-CCAACCATGTGGCCTCCAGAATTTTGAGGGCATGG  346
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAATGCCTTGATTCCCAACCATGTGGCCTCCAGAATTTTGAGGGCATGG  335

seq1  GTTTCTATTCTCAGATTGTAGTAATTTTTTATGGCTCTCCTAGGGAACTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATTCTCAGATTGTAGTAATTTTTTATGGCTCTCCTAGGGAACTA  385

seq1  TTACAGTACTCATCTGCATTCTGTGTATGTTCTGAGTTGTTAAATGGCCG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTACTCATCTGCATTCTGTGTATGTTCTGAGTTGTTAAATGGCCG  435

seq1  ACCTGAGCCTGTCATTCTCTATCTGTCAAGGCAGTAAGAATATAAGCTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGCCTGTCATTCTCTATCTGTCAAGGCAGTAAGAATATAAGCTTG  485

seq1  TGACATAAAAGGAGGAAAAAGGACCATCAGCAGGGAGGAAAGGAAACAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAAAAGGAGGAAAAAGGACCATCAGCAGGGAGGAAAGGAAACAAA  535

seq1  CAAAAGGAGGGCAGGAAGGAGACAAAGGAATTCCAACAAACTATAATGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAGGGCAGGAAGGAGACAAAGGAATTCCAACAAACTATAATGAC  585

seq1  AGATATCTGAGGAAACTCCAGAATGGAAGACGTTATTTTCTGTACTAACG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCTGAGGAAACTCCAGAATGGAAGACGTTATTTTCTGTACTAACG  635

seq1  TAAAAGTATTATCAAAGAGAAATTTGAAAATATTTAAAAGGGAGAATCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTATTATCAAAGAGAAATTTGAAAATATTTAAAAGGGAGAATCAG  685

seq1  TCAACTCCTTAATCCTAAGGCTCACTGTTGGTTTCATAGTGTTCAAATGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCTTAATCCTAAGGCTCACTGTTGGTTTCATAGTGTTCAAATGA  735

seq1  TCCATGCGAATCTCAGTCTTTCTGTCTTGTTCATTGGTTTCTCAGCTTAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCGAATCTCAGTCTTTCTGTCTTGTTCATTGGTTTCTCAGCTTAG  785

seq1  TCTGTTGGACCAAGTAATAATTGTGGATGTGTTATACCTTGTACCATGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGACCAAGTAATAATTGTGGATGTGTTATACCTTGTACCATGGC  835

seq1  AATGAGTGAATCTTTTTAATATTCATATTTCTTAACTTTTCCATTTCTAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGAATCTTTTTAATATTCATATTTCTTAACTTTTCCATTTCTAC  885

seq1  TGTCAATAGGAGAAAGAGTTCAGCATAGAATAATACTTAATAATAAGTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATAGGAGAAAGAGTTCAGCATAGAATAATACTTAATAATAAGTTC  935

seq1  TATATTCAATTTGTTATCAATGTTCAGAAGCCATGCAAGAGTGGTGCCTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCAATTTGTTATCAATGTTCAGAAGCCATGCAAGAGTGGTGCCTA  985

seq1  TTGGCTTTTGCTTCCCATGCCGTGCTTAGCCTGTTTTCTTACAGAACCCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTTGCTTCCCATGCCGTGCTTAGCCTGTTTTCTTACAGAACCCC  1035

seq1  TGACCACCTGCTCAGGATCAGTCTTCCTCACAATGGGCTTGCCTTCCCCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACCTGCTCAGGATCAGTCTTCCTCACAATGGGCTTGCCTTCCCCT  1085

seq1  GTCAATCAGTAATTAAGAAAATGCCCTACGGCCTTGCTGCCTACAGCCTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCAGTAATTAAGAAAATGCCCTACGGCCTTGCTGCCTACAGCCTG  1135

seq1  CTTTTATGGGGATTATTTCTCTATTAGAATTC  1178
      ||||||||||||||||||||||||||||||||
seq2  CTTTTATGGGGATTATTTCTCTATTAGAATTC  1167


seq1: chrX_128136123_128137192
seq2: B6Ng01-278O19.g_66_1128

seq1  GAATTCTGGAGCAGACTTAAGGTGGAGGAAATGGGAAAGTGGGTAAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGCAGACTTAAGGTGGAGGAAATGGGAAAGTGGGTAAGCAA  50

seq1  AGAGGGAAAGACAGGTAGTTTAGAAAGAGGATGGTGTACTTATTGTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAAGACAGGTAGTTTAGAAAGAGGATGGTGTACTTATTGTAATC  100

seq1  TGAAGATTAGAAACATGTGCCATTCCCTTCTATGTGAACTGATAGAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTAGAAACATGTGCCATTCCCTTCTATGTGAACTGATAGAATCC  150

seq1  TAGGTCAGTCTTAAGCCATTTATGCCTTCCTTTGATTTCTTTGCATTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAGTCTTAAGCCATTTATGCCTTCCTTTGATTTCTTTGCATTCCC  200

seq1  ACATTCTGGTAATGACAATATAGCTAATCACGACAAAACTCACCTAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGGTAATGACAATATAGCTAATCACGACAAAACTCACCTAGTCT  250

seq1  TCCTTACTAGAAAGAAAACATCAAATGAACCCTCCAACACATATATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTAGAAAGAAAACATCAAATGAACCCTCCAACACATATATTAAA  300

seq1  TGGATGATCATTAAGAAGAAACAATAACTAAAATGTCTTATTTAAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATCATTAAGAAGAAACAATAACTAAAATGTCTTATTTAAAGTCA  350

seq1  TATTAGTAAAATTTATATTCCATTCAAGCATTTTAAGGTTAATATTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTAAAATTTATATTCCATTCAAGCATTTTAAGGTTAATATTTCCT  400

seq1  ATTCAATGCTTGCTTTTCATTATGACAGATGCTTTCAGATGTAAGAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGCTTGCTTTTCATTATGACAGATGCTTTCAGATGTAAGAGCCA  450

seq1  TTAGGGAAAGCAAACTGGATTCTAACTCACACTAAGTGATATTCTCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAAGCAAACTGGATTCTAACTCACACTAAGTGATATTCTCAGCC  500

seq1  CTTCAGAATGCTTGCAACCCTCTGCACCCACCCCTTTCAGATCCTCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAATGCTTGCAACCCTCTGCACCCACCCCTTTCAGATCCTCTTAA  550

seq1  TACTGCTTTTTGAAAATGGAAAAAAAAAAAAAAAACATAACGCCAAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTTTTGAAAATGGAAAAAAAAAAAAAAAACATAACGCCAAGTGC  600

seq1  TCATTTTTTTTTCCAGAAAGAAAATATATCTTCCTCATTTTAACTGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTTTTCCAGAAAGAAAATATATCTTCCTCATTTTAACTGCAAA  650

seq1  TCGGTTTTTGGCGGCCAGAGGATGCTGCATCAGCAATCAAAGAATCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTTTTGGCGGCCAGAGGATGCTGCATCAGCAATCAAAGAATCAAGA  700

seq1  GTGTTAGAAAAACATTTTGTGAAGTACAGAATCAAGTAAAGTGAACACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGAAAAACATTTTGTGAAGTACAGAATCAAGTAAAGTGAACACTC  750

seq1  AGCAAGCACGTTCTTCTTGTCTTTGTGTGACACAGTTTGCTAGCTTGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCACGTTCTTCTTGTCTTTGTGTGACACAGTTTGCTAGCTTGTTA  800

seq1  TGCACAAAAACTGATTCATGTGGCTTTCCCAGCCCGTGTATG-TTTGCAG  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCACAAAAACTGATTCATGTGGCTTTCCCAGCCCGTGTATGTTTTGCAG  850

seq1  CAATACTGCTGGCATCCTGAGATAGGC-TATGCTACCTATTTTAGGCACA  898
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  CAATACTGCTGGCATCCTGAGATAGGCTTATGCTACCTATTTTAGGCAC-  899

seq1  AAAAAAGAACTAA-CACATTTACTTTTGAAACATTCAATAGAAAAGCTAT  947
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAACTAACCACATTTACTTTTGAAACATTCAATAGAAAAGCTAT  949

seq1  G-TGCTTTACTCCGCATGTGTGAGGTTTGTTTTGTTCAGTGGTAGATTTT  996
      | ||||||||| |||||||||||||||||||||| ||||| |||||||||
seq2  GTTGCTTTACT-CGCATGTGTGAGGTTTGTTTTG-TCAGT-GTAGATTTT  996

seq1  ATTTCTATTTGATGGTGATGGGGCTGGCTGTTCATTAGTTTCAAAACTGT  1046
      ||||||||||||| ||||| |||||||||| ||| ||||||| |||||||
seq2  ATTTCTATTTGAT-GTGAT-GGGCTGGCTG-TCA-TAGTTTC-AAACTGT  1041

seq1  GCATGAAGCCATGGGATACTTCGC  1070
      ||||||   |||||||||||||||
seq2  GCATGA--GCATGGGATACTTCGC  1063


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